Wall clock time and date at job start Mon Mar 30 2020 07:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 113.54584 * 2 1 4 4 C 1.48993 * 114.57818 * 134.28472 * 2 1 3 5 5 H 1.08995 * 110.31368 * 45.63126 * 4 2 1 6 6 O 1.38976 * 135.72818 * 252.04775 * 4 2 1 7 7 C 1.45507 * 106.82473 * 229.05787 * 6 4 2 8 8 C 1.56145 * 105.72136 * 12.34377 * 7 6 4 9 9 C 1.52675 * 100.01025 * 23.26967 * 8 7 6 10 10 H 1.08996 * 114.17198 * 77.60549 * 9 8 7 11 11 C 1.50718 * 126.52676 * 233.58584 * 9 8 7 12 12 H 1.09008 * 114.48805 * 17.90495 * 11 9 8 13 13 O 1.45201 * 114.52807 * 244.29454 * 11 9 8 14 14 C 1.34230 * 117.00297 * 118.12345 * 13 11 9 15 15 O 1.20832 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.50700 * 120.00141 * 179.97438 * 14 13 11 17 17 C 1.53001 * 109.47121 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47121 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00286 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99760 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.46849 * 89.99685 * 22 20 18 24 24 H 1.48495 * 109.47128 * 209.99494 * 22 20 18 25 25 H 1.48496 * 109.47132 * 330.00059 * 22 20 18 26 26 H 1.08994 * 109.47100 * 50.33595 * 1 2 3 27 27 H 1.08995 * 109.46621 * 290.33120 * 1 2 3 28 28 H 1.09000 * 109.46998 * 170.32978 * 1 2 3 29 29 H 1.09000 * 109.47210 * 42.15411 * 3 2 1 30 30 H 1.09004 * 109.47312 * 162.15371 * 3 2 1 31 31 H 1.09003 * 109.46964 * 282.15136 * 3 2 1 32 32 H 1.08993 * 110.19865 * 131.41276 * 7 6 4 33 33 H 1.08997 * 110.19367 * 253.20497 * 7 6 4 34 34 H 1.09005 * 111.29590 * 140.96026 * 8 7 6 35 35 H 1.08997 * 111.30138 * 265.57157 * 8 7 6 36 36 H 1.08995 * 109.47247 * 300.00006 * 16 14 13 37 37 H 1.09001 * 109.47080 * 59.99628 * 16 14 13 38 38 H 1.09006 * 109.46803 * 299.99898 * 17 16 14 39 39 H 1.09001 * 109.47329 * 59.99925 * 17 16 14 40 40 H 0.97005 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1412 1.4026 0.0000 4 6 2.1497 -0.9460 0.9700 5 1 1.6571 -1.9170 0.9189 6 8 2.8355 -0.8304 2.1732 7 6 4.0354 -1.6449 2.0540 8 6 4.1538 -2.0048 0.5392 9 6 3.3436 -0.8625 -0.0690 10 1 3.8767 0.0870 -0.1162 11 6 2.1811 -0.9939 -1.0192 12 1 1.7244 -1.9835 -1.0403 13 8 2.4152 -0.4357 -2.3390 14 6 2.3670 -1.2850 -3.3773 15 8 2.1372 -2.4563 -3.1895 16 6 2.5994 -0.7777 -4.7772 17 6 2.4904 -1.9404 -5.7657 18 6 2.7222 -1.4330 -7.1656 19 1 2.9272 -0.3860 -7.3335 20 6 2.6735 -2.3056 -8.2320 21 7 2.8753 -1.8627 -9.4538 22 14 2.3196 -4.1166 -7.9416 23 1 0.8543 -4.3507 -8.0032 24 1 2.9945 -4.9268 -8.9871 25 1 2.8281 -4.5121 -6.6037 26 1 -0.3633 0.6559 -0.7911 27 1 -0.3632 0.3571 0.9636 28 1 -0.3633 -1.0131 -0.1726 29 1 1.5879 2.0400 0.6897 30 1 3.1831 1.3449 0.3149 31 1 2.0880 1.8221 -1.0047 32 1 4.9088 -1.0777 2.3756 33 1 3.9354 -2.5515 2.6507 34 1 5.1910 -1.9761 0.2054 35 1 3.6979 -2.9714 0.3251 36 1 1.8510 -0.0232 -5.0192 37 1 3.5942 -0.3370 -4.8434 38 1 3.2392 -2.6946 -5.5235 39 1 1.4958 -2.3815 -5.6995 40 1 2.8407 -2.4765 -10.2041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813070754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:33 Heat of formation + Delta-G solvation = -52.965199 kcal Electronic energy + Delta-G solvation = -21021.100467 eV Core-core repulsion = 17804.381382 eV Total energy + Delta-G solvation = -3216.719085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.43860 -39.78716 -37.19882 -35.50166 -33.64055 -32.20373 -31.42869 -29.31135 -28.00606 -26.79653 -24.73977 -23.38430 -21.80031 -20.71675 -19.83846 -19.29064 -17.78232 -17.11018 -16.34702 -16.25616 -15.69949 -15.24677 -15.10963 -14.57296 -14.40766 -14.12957 -13.63408 -13.25512 -13.00906 -12.66645 -12.44281 -12.28299 -12.17263 -11.87456 -11.76094 -11.68582 -11.48820 -11.35848 -11.04026 -10.88410 -10.33596 -10.20641 -10.00878 -9.95421 -9.93725 -9.76190 -9.42236 -9.27559 -8.57527 -6.09008 -4.08958 2.52786 2.63485 3.13219 3.32498 3.39603 3.48392 3.78575 4.06021 4.31554 4.43242 4.44401 4.68085 4.74475 4.86942 4.99939 5.03697 5.17812 5.23074 5.25774 5.40761 5.44806 5.48317 5.51845 5.62250 5.67935 5.74402 5.77892 5.89747 5.97251 5.98890 6.02539 6.15659 6.47742 6.68895 6.81841 7.21564 7.28863 7.68915 8.18203 8.45141 8.93324 9.52809 11.03597 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.004024 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.741833 B = 6957.317174 C = 7275.573170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.038 4.038 3 C -0.131 4.131 4 C 0.034 3.966 5 H 0.080 0.920 6 O -0.355 6.355 7 C 0.053 3.947 8 C -0.145 4.145 9 C -0.195 4.195 10 H 0.134 0.866 11 C 0.083 3.917 12 H 0.122 0.878 13 O -0.343 6.343 14 C 0.458 3.542 15 O -0.513 6.513 16 C -0.096 4.096 17 C -0.002 4.002 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.900 5.900 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.262 1.262 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 3.659 22.889 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.188 4.188 4 C -0.025 4.025 5 H 0.097 0.903 6 O -0.274 6.274 7 C -0.022 4.022 8 C -0.182 4.182 9 C -0.213 4.213 10 H 0.152 0.848 11 C 0.028 3.972 12 H 0.140 0.860 13 O -0.260 6.260 14 C 0.302 3.698 15 O -0.400 6.400 16 C -0.133 4.133 17 C -0.039 4.039 18 C -0.565 4.565 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.186 1.186 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.483 3.346 22.983 23.230 hybrid contribution -0.046 -1.338 -0.061 1.340 sum -0.529 2.009 22.921 23.015 Atomic orbital electron populations 1.21777 0.92680 1.02701 1.02619 1.21944 0.95834 0.95254 0.90807 1.21746 1.00737 0.93094 1.03211 1.23247 0.97040 0.99261 0.82934 0.90293 1.87855 1.35488 1.70290 1.33731 1.24193 0.87313 0.94832 0.95906 1.22679 1.01990 0.98774 0.94807 1.25259 0.95842 1.01587 0.98602 0.84809 1.24416 0.96120 0.98210 0.78500 0.86017 1.86648 1.81827 1.42164 1.15383 1.24787 0.71913 0.84940 0.88176 1.90596 1.44858 1.18687 1.85851 1.21546 1.04385 1.02462 0.84946 1.19478 0.97787 0.92946 0.93715 1.21032 1.49492 0.97160 0.88840 0.90642 1.24948 0.94339 0.98812 0.94948 1.69903 1.49823 1.35524 0.98611 0.86811 0.78914 0.85407 0.78502 1.20143 1.21296 1.18647 0.91332 0.91628 0.92111 0.91745 0.91296 0.90684 0.89919 0.91047 0.89815 0.90199 0.88298 0.88327 0.95659 0.96072 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.31 37.16 0.35 -1.01 16 2 C -0.04 -0.41 1.54 -165.06 -0.25 -0.66 16 3 C -0.13 -1.28 8.73 37.16 0.32 -0.95 16 4 C 0.03 0.38 4.15 -39.81 -0.17 0.21 16 5 H 0.08 0.86 7.31 -51.93 -0.38 0.48 16 6 O -0.35 -4.07 11.34 -29.85 -0.34 -4.40 16 7 C 0.05 0.47 7.87 38.84 0.31 0.77 16 8 C -0.14 -1.42 6.81 -25.21 -0.17 -1.60 16 9 C -0.19 -2.21 4.18 -99.39 -0.42 -2.62 16 10 H 0.13 1.47 5.41 -51.93 -0.28 1.19 16 11 C 0.08 1.08 3.61 -40.11 -0.14 0.94 16 12 H 0.12 1.70 6.47 -51.92 -0.34 1.36 16 13 O -0.34 -5.29 9.89 -39.26 -0.39 -5.68 16 14 C 0.46 8.40 7.96 36.01 0.29 8.69 16 15 O -0.51 -10.74 15.15 -18.75 -0.28 -11.02 16 16 C -0.10 -1.85 5.75 -27.88 -0.16 -2.01 16 17 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 18 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 19 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 22 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.07 0.66 5.68 -51.93 -0.29 0.36 16 31 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -31.97 322.09 -6.90 -38.87 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.28 Total: -1.77 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.57 Total: -11.53 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.01 Total: -21.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.97 -6.90 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.093 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds