Wall clock time and date at job start Mon Mar 30 2020 07:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 113.54584 * 2 1 4 4 C 1.48993 * 114.57818 * 134.28472 * 2 1 3 5 5 H 1.08995 * 110.31368 * 45.63126 * 4 2 1 6 6 O 1.38976 * 135.72818 * 252.04775 * 4 2 1 7 7 C 1.45507 * 106.82473 * 229.05787 * 6 4 2 8 8 C 1.56145 * 105.72136 * 12.34377 * 7 6 4 9 9 C 1.52675 * 100.01025 * 23.26967 * 8 7 6 10 10 H 1.08996 * 114.17198 * 77.60549 * 9 8 7 11 11 C 1.50718 * 126.52676 * 233.58584 * 9 8 7 12 12 H 1.09008 * 114.48805 * 17.90495 * 11 9 8 13 13 O 1.45201 * 114.52807 * 244.29454 * 11 9 8 14 14 C 1.34230 * 117.00297 * 118.12345 * 13 11 9 15 15 O 1.20832 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.50700 * 120.00141 * 179.97438 * 14 13 11 17 17 C 1.53001 * 109.47121 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47121 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00286 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99760 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.46849 * 89.99685 * 22 20 18 24 24 H 1.48495 * 109.47128 * 209.99494 * 22 20 18 25 25 H 1.48496 * 109.47132 * 330.00059 * 22 20 18 26 26 H 1.08994 * 109.47100 * 50.33595 * 1 2 3 27 27 H 1.08995 * 109.46621 * 290.33120 * 1 2 3 28 28 H 1.09000 * 109.46998 * 170.32978 * 1 2 3 29 29 H 1.09000 * 109.47210 * 42.15411 * 3 2 1 30 30 H 1.09004 * 109.47312 * 162.15371 * 3 2 1 31 31 H 1.09003 * 109.46964 * 282.15136 * 3 2 1 32 32 H 1.08993 * 110.19865 * 131.41276 * 7 6 4 33 33 H 1.08997 * 110.19367 * 253.20497 * 7 6 4 34 34 H 1.09005 * 111.29590 * 140.96026 * 8 7 6 35 35 H 1.08997 * 111.30138 * 265.57157 * 8 7 6 36 36 H 1.08995 * 109.47247 * 300.00006 * 16 14 13 37 37 H 1.09001 * 109.47080 * 59.99628 * 16 14 13 38 38 H 1.09006 * 109.46803 * 299.99898 * 17 16 14 39 39 H 1.09001 * 109.47329 * 59.99925 * 17 16 14 40 40 H 0.97005 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1412 1.4026 0.0000 4 6 2.1497 -0.9460 0.9700 5 1 1.6571 -1.9170 0.9189 6 8 2.8355 -0.8304 2.1732 7 6 4.0354 -1.6449 2.0540 8 6 4.1538 -2.0048 0.5392 9 6 3.3436 -0.8625 -0.0690 10 1 3.8767 0.0870 -0.1162 11 6 2.1811 -0.9939 -1.0192 12 1 1.7244 -1.9835 -1.0403 13 8 2.4152 -0.4357 -2.3390 14 6 2.3670 -1.2850 -3.3773 15 8 2.1372 -2.4563 -3.1895 16 6 2.5994 -0.7777 -4.7772 17 6 2.4904 -1.9404 -5.7657 18 6 2.7222 -1.4330 -7.1656 19 1 2.9272 -0.3860 -7.3335 20 6 2.6735 -2.3056 -8.2320 21 7 2.8753 -1.8627 -9.4538 22 14 2.3196 -4.1166 -7.9416 23 1 0.8543 -4.3507 -8.0032 24 1 2.9945 -4.9268 -8.9871 25 1 2.8281 -4.5121 -6.6037 26 1 -0.3633 0.6559 -0.7911 27 1 -0.3632 0.3571 0.9636 28 1 -0.3633 -1.0131 -0.1726 29 1 1.5879 2.0400 0.6897 30 1 3.1831 1.3449 0.3149 31 1 2.0880 1.8221 -1.0047 32 1 4.9088 -1.0777 2.3756 33 1 3.9354 -2.5515 2.6507 34 1 5.1910 -1.9761 0.2054 35 1 3.6979 -2.9714 0.3251 36 1 1.8510 -0.0232 -5.0192 37 1 3.5942 -0.3370 -4.8434 38 1 3.2392 -2.6946 -5.5235 39 1 1.4958 -2.3815 -5.6995 40 1 2.8407 -2.4765 -10.2041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813070754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:33 Heat of formation + Delta-G solvation = -71.651352 kcal Electronic energy + Delta-G solvation = -21021.910759 eV Core-core repulsion = 17804.381382 eV Total energy + Delta-G solvation = -3217.529378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.34139 -41.16179 -38.21832 -36.71586 -35.63814 -33.44034 -32.99833 -30.11917 -28.78228 -28.59717 -25.86574 -24.32405 -23.37305 -21.70895 -21.35402 -20.16166 -19.39594 -18.64211 -17.63017 -17.49188 -16.79511 -16.32754 -16.22579 -16.04416 -15.50406 -15.37482 -14.81915 -14.78713 -14.55537 -13.91261 -13.53047 -13.32128 -13.19400 -13.10561 -12.94032 -12.82704 -12.59226 -12.49477 -12.33466 -12.16862 -12.03297 -11.81123 -11.72065 -11.48465 -11.39947 -10.95366 -10.79245 -10.74192 -10.32048 -8.32344 -6.36561 1.18849 1.33689 1.35872 1.49159 1.50939 2.03491 2.33897 2.89085 3.03178 3.15197 3.45280 3.59039 3.79479 3.92270 4.01837 4.09705 4.18373 4.26443 4.32607 4.38229 4.39244 4.44616 4.67388 4.74506 4.76808 4.82941 4.87618 4.90598 4.95920 5.03287 5.08469 5.24794 5.26829 5.34757 5.35599 5.44409 5.58892 5.91284 6.20906 6.68613 6.79970 7.28761 8.83263 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.004024 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.741833 B = 6957.317174 C = 7275.573170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.130 4.130 4 C 0.040 3.960 5 H 0.077 0.923 6 O -0.369 6.369 7 C 0.054 3.946 8 C -0.146 4.146 9 C -0.199 4.199 10 H 0.140 0.860 11 C 0.065 3.935 12 H 0.111 0.889 13 O -0.335 6.335 14 C 0.468 3.532 15 O -0.542 6.542 16 C -0.092 4.092 17 C 0.002 3.998 18 C -0.532 4.532 19 H 0.052 0.948 20 C 0.016 3.984 21 N -0.942 5.942 22 Si 0.938 3.062 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.259 1.259 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 3.587 24.872 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 C -0.187 4.187 4 C -0.019 4.019 5 H 0.094 0.906 6 O -0.288 6.288 7 C -0.021 4.021 8 C -0.183 4.183 9 C -0.217 4.217 10 H 0.158 0.842 11 C 0.010 3.990 12 H 0.128 0.872 13 O -0.251 6.251 14 C 0.314 3.686 15 O -0.432 6.432 16 C -0.129 4.129 17 C -0.035 4.035 18 C -0.570 4.570 19 H 0.070 0.930 20 C -0.182 4.182 21 N -0.582 5.582 22 Si 0.762 3.238 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.183 1.183 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.490 3.296 24.990 25.211 hybrid contribution -0.012 -1.234 -0.618 1.380 sum -0.502 2.062 24.372 24.464 Atomic orbital electron populations 1.21808 0.91847 1.02695 1.03521 1.21970 0.96516 0.95301 0.89258 1.21767 1.01049 0.92489 1.03402 1.23143 0.96776 0.99179 0.82802 0.90574 1.87835 1.36375 1.70890 1.33739 1.24341 0.87024 0.95507 0.95219 1.22718 1.02196 0.97902 0.95519 1.25326 0.96226 1.02527 0.97667 0.84216 1.24757 0.98131 0.98655 0.77415 0.87166 1.86606 1.81244 1.41348 1.15941 1.24371 0.71293 0.84502 0.88474 1.90589 1.46409 1.19872 1.86344 1.21340 1.05877 1.00833 0.84860 1.19315 0.96946 0.94378 0.92871 1.21343 1.48516 0.96235 0.90891 0.93018 1.25787 0.94398 1.03307 0.94730 1.70020 1.51396 1.37227 0.99597 0.85834 0.79168 0.80207 0.78555 1.19232 1.20416 1.18305 0.91168 0.90177 0.92432 0.90309 0.91077 0.91055 0.88150 0.89632 0.88946 0.90879 0.86761 0.86918 0.96568 0.96602 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.31 71.98 0.67 -1.82 16 2 C -0.03 -0.60 1.54 -59.02 -0.09 -0.69 16 3 C -0.13 -2.26 8.73 71.98 0.63 -1.63 16 4 C 0.04 0.82 4.15 22.12 0.09 0.91 16 5 H 0.08 1.59 7.31 -2.39 -0.02 1.57 16 6 O -0.37 -7.66 11.34 -129.71 -1.47 -9.13 16 7 C 0.05 0.83 7.87 73.07 0.58 1.40 16 8 C -0.15 -2.62 6.81 31.58 0.22 -2.41 16 9 C -0.20 -4.21 4.18 -16.47 -0.07 -4.28 16 10 H 0.14 2.79 5.41 -2.39 -0.01 2.78 16 11 C 0.07 1.64 3.61 21.93 0.08 1.72 16 12 H 0.11 3.05 6.47 -2.38 -0.02 3.04 16 13 O -0.33 -9.92 9.89 -51.42 -0.51 -10.43 16 14 C 0.47 16.75 7.96 71.24 0.57 17.32 16 15 O -0.54 -22.43 15.15 21.95 0.33 -22.10 16 16 C -0.09 -3.45 5.75 29.85 0.17 -3.28 16 17 C 0.00 0.12 3.33 29.85 0.10 0.22 16 18 C -0.53 -30.04 9.66 25.60 0.25 -29.80 16 19 H 0.05 3.09 7.99 -2.91 -0.02 3.06 16 20 C 0.02 0.92 5.47 84.65 0.46 1.38 16 21 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 22 Si 0.94 45.39 27.47 68.60 1.88 47.28 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.08 1.15 8.11 -2.39 -0.02 1.13 16 30 H 0.07 1.20 5.68 -2.38 -0.01 1.18 16 31 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.02 0.80 7.16 -2.38 -0.02 0.78 16 39 H 0.02 0.77 7.53 -2.39 -0.02 0.75 16 40 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -67.59 322.09 5.15 -62.44 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.96 Total: 10.77 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.65 Total: -20.96 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.65 Total: -41.66 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -67.59 5.15 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.211 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds