Wall clock time and date at job start Mon Mar 30 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 112.78806 * 2 1 4 4 C 1.53647 * 113.53641 * 130.96177 * 2 1 3 5 5 H 1.08996 * 113.53589 * 24.47617 * 4 2 1 6 6 O 1.45201 * 113.53332 * 253.89589 * 4 2 1 7 7 C 1.34232 * 117.00261 * 151.28346 * 6 4 2 8 8 O 1.20822 * 119.99736 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00048 * 180.02562 * 7 6 4 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.53742 * 87.65147 * 139.18871 * 4 2 1 20 20 H 1.09005 * 116.36834 * 94.53613 * 19 4 2 21 21 C 1.54310 * 112.96408 * 231.83307 * 19 4 2 22 22 C 1.54456 * 104.17333 * 92.86305 * 21 19 4 23 23 O 1.44396 * 104.80701 * 335.90223 * 22 21 19 24 24 C 1.44244 * 105.40486 * 40.56993 * 23 22 21 25 25 H 1.09008 * 114.89891 * 89.84859 * 24 23 22 26 26 H 1.09001 * 109.46757 * 308.54083 * 1 2 3 27 27 H 1.08994 * 109.47335 * 68.54802 * 1 2 3 28 28 H 1.09005 * 109.46527 * 188.55006 * 1 2 3 29 29 H 1.08998 * 109.46593 * 171.45479 * 3 2 1 30 30 H 1.08994 * 109.47259 * 291.45502 * 3 2 1 31 31 H 1.08998 * 109.47037 * 51.45992 * 3 2 1 32 32 H 1.09000 * 109.47664 * 59.99992 * 9 7 6 33 33 H 1.09002 * 109.46824 * 299.99463 * 9 7 6 34 34 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 35 35 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 36 36 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 37 37 H 1.09004 * 110.45546 * 334.20238 * 21 19 4 38 38 H 1.08998 * 110.61609 * 211.60794 * 21 19 4 39 39 H 1.08999 * 110.37109 * 217.06778 * 22 21 19 40 40 H 1.09000 * 110.46405 * 94.77750 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1227 1.4106 0.0000 4 6 2.1437 -0.9234 1.0637 5 1 1.4837 -1.7358 1.3679 6 8 2.7137 -0.2094 2.1922 7 6 2.7243 -0.8461 3.3739 8 8 2.2727 -1.9632 3.4622 9 6 3.2996 -0.1675 4.5903 10 6 3.1901 -1.1032 5.7958 11 6 3.7659 -0.4249 7.0122 12 1 4.1699 0.5736 6.9331 13 6 3.7723 -1.0768 8.2270 14 7 4.2743 -0.4847 9.2886 15 14 3.0664 -2.8008 8.3653 16 1 4.1374 -3.7965 8.1064 17 1 2.5212 -3.0044 9.7316 18 1 1.9795 -2.9722 7.3681 19 6 3.1844 -1.3394 0.0114 20 1 4.1285 -0.7946 0.0225 21 6 3.2979 -2.8697 -0.1511 22 6 2.3220 -3.2013 -1.3014 23 8 1.3679 -2.1175 -1.2999 24 6 2.1433 -0.9247 -1.0618 25 1 2.5183 -0.4342 -1.9602 26 1 -0.3633 0.6403 0.8038 27 1 -0.3634 0.3758 -0.9564 28 1 -0.3632 -1.0163 0.1528 29 1 3.2003 1.3518 0.1527 30 1 1.9169 1.8911 -0.9564 31 1 1.6731 1.9935 0.8038 32 1 2.7461 0.7499 4.7905 33 1 4.3477 0.0723 4.4109 34 1 3.7439 -2.0204 5.5955 35 1 2.1422 -1.3434 5.9753 36 1 4.2784 -0.9433 10.1433 37 1 2.9925 -3.3738 0.7658 38 1 4.3155 -3.1526 -0.4204 39 1 1.8194 -4.1496 -1.1111 40 1 2.8527 -3.2382 -2.2528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813070755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:36 Heat of formation + Delta-G solvation = -119.490269 kcal Electronic energy + Delta-G solvation = -21140.969741 eV Core-core repulsion = 17921.365913 eV Total energy + Delta-G solvation = -3219.603829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58218 -39.61728 -36.68255 -35.16329 -33.62105 -32.27592 -31.40335 -29.12190 -27.54912 -26.83965 -24.87773 -23.36727 -21.81197 -20.98709 -19.79214 -18.77715 -17.70134 -17.00282 -16.40229 -16.15295 -15.68496 -15.56735 -14.81404 -14.37422 -14.11293 -13.77468 -13.66648 -13.16979 -12.99870 -12.70046 -12.56964 -12.28012 -12.18758 -11.87366 -11.66586 -11.50587 -11.45111 -11.13083 -11.02881 -10.89118 -10.53829 -10.30583 -10.17048 -9.99039 -9.88174 -9.80491 -9.62244 -9.26356 -8.56418 -6.07953 -4.07799 2.69187 3.04310 3.33466 3.36210 3.40547 3.49880 3.96560 4.23988 4.34362 4.45586 4.61956 4.81369 4.89695 4.91698 4.99312 5.11947 5.23943 5.26890 5.36934 5.42023 5.49645 5.54321 5.65395 5.71685 5.76225 5.83409 5.88182 5.94809 5.99320 6.02651 6.15163 6.21718 6.50343 6.60412 6.86299 7.23443 7.30759 7.70354 8.23489 8.46559 8.94383 9.53991 11.04687 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.004276 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.193160 B = 6546.773480 C = 6987.319383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.121 4.121 4 C 0.079 3.921 5 H 0.113 0.887 6 O -0.347 6.347 7 C 0.456 3.544 8 O -0.512 6.512 9 C -0.096 4.096 10 C -0.002 4.002 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.147 4.147 20 H 0.119 0.881 21 C -0.152 4.152 22 C 0.048 3.952 23 O -0.357 6.357 24 C 0.058 3.942 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -0.130 -23.522 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 C -0.178 4.178 4 C 0.024 3.976 5 H 0.131 0.869 6 O -0.264 6.264 7 C 0.300 3.700 8 O -0.399 6.399 9 C -0.133 4.133 10 C -0.039 4.039 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.186 1.186 19 C -0.166 4.166 20 H 0.137 0.863 21 C -0.190 4.190 22 C -0.029 4.029 23 O -0.276 6.276 24 C 0.000 4.000 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.981 -0.525 -23.356 23.699 hybrid contribution -0.066 -1.120 0.232 1.146 sum -4.047 -1.645 -23.124 23.533 Atomic orbital electron populations 1.21641 0.92873 1.02640 1.01890 1.22147 0.96795 0.95355 0.92925 1.21434 1.01387 0.92983 1.02038 1.24485 0.94975 0.95502 0.82644 0.86943 1.86641 1.74164 1.47527 1.18099 1.24755 0.75494 0.85325 0.84439 1.90596 1.43668 1.20294 1.85328 1.21531 1.01883 1.01001 0.88922 1.19474 0.98072 0.94699 0.91687 1.21035 1.40347 1.03441 0.91650 0.90661 1.24944 0.94581 0.97905 0.95607 1.69901 1.45744 1.38089 1.00174 0.86815 0.80397 0.85011 0.77440 1.20175 1.21288 1.18611 1.24486 0.99333 0.96379 0.96408 0.86282 1.22923 1.00677 0.95205 1.00205 1.23505 0.90487 0.91371 0.97493 1.89030 1.30158 1.15152 1.93288 1.24009 0.91908 0.88296 0.95743 0.88151 0.92295 0.92069 0.91767 0.91670 0.92254 0.91170 0.88368 0.88434 0.96120 0.95638 0.92595 0.89831 0.90222 0.88863 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.79 37.16 0.33 -1.11 16 2 C -0.07 -0.79 1.32 -153.87 -0.20 -1.00 16 3 C -0.12 -1.16 8.42 37.16 0.31 -0.84 16 4 C 0.08 1.09 2.92 -26.01 -0.08 1.01 16 5 H 0.11 1.78 6.73 -51.93 -0.35 1.44 16 6 O -0.35 -5.47 9.34 -39.26 -0.37 -5.84 16 7 C 0.46 8.56 7.96 36.00 0.29 8.85 16 8 O -0.51 -11.00 15.17 -18.75 -0.28 -11.29 16 9 C -0.10 -1.88 5.75 -27.89 -0.16 -2.04 16 10 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 11 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 12 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 15 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 19 C -0.15 -1.64 4.50 -88.40 -0.40 -2.04 16 20 H 0.12 1.22 8.02 -51.93 -0.42 0.80 16 21 C -0.15 -1.59 6.63 -25.28 -0.17 -1.75 16 22 C 0.05 0.45 7.63 37.92 0.29 0.74 16 23 O -0.36 -4.13 10.28 -35.23 -0.36 -4.49 16 24 C 0.06 0.60 4.75 -25.29 -0.12 0.48 16 25 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 29 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.02 0.52 7.54 -51.93 -0.39 0.12 16 35 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -32.15 324.28 -6.99 -39.14 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.54 Total: -2.04 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.43 Total: -11.08 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.86 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.01 Total: -21.62 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.15 -6.99 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.347 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds