Wall clock time and date at job start Mon Mar 30 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 112.78806 * 2 1 4 4 C 1.53647 * 113.53641 * 130.96177 * 2 1 3 5 5 H 1.08996 * 113.53589 * 24.47617 * 4 2 1 6 6 O 1.45201 * 113.53332 * 253.89589 * 4 2 1 7 7 C 1.34232 * 117.00261 * 151.28346 * 6 4 2 8 8 O 1.20822 * 119.99736 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00048 * 180.02562 * 7 6 4 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.53742 * 87.65147 * 139.18871 * 4 2 1 20 20 H 1.09005 * 116.36834 * 94.53613 * 19 4 2 21 21 C 1.54310 * 112.96408 * 231.83307 * 19 4 2 22 22 C 1.54456 * 104.17333 * 92.86305 * 21 19 4 23 23 O 1.44396 * 104.80701 * 335.90223 * 22 21 19 24 24 C 1.44244 * 105.40486 * 40.56993 * 23 22 21 25 25 H 1.09008 * 114.89891 * 89.84859 * 24 23 22 26 26 H 1.09001 * 109.46757 * 308.54083 * 1 2 3 27 27 H 1.08994 * 109.47335 * 68.54802 * 1 2 3 28 28 H 1.09005 * 109.46527 * 188.55006 * 1 2 3 29 29 H 1.08998 * 109.46593 * 171.45479 * 3 2 1 30 30 H 1.08994 * 109.47259 * 291.45502 * 3 2 1 31 31 H 1.08998 * 109.47037 * 51.45992 * 3 2 1 32 32 H 1.09000 * 109.47664 * 59.99992 * 9 7 6 33 33 H 1.09002 * 109.46824 * 299.99463 * 9 7 6 34 34 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 35 35 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 36 36 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 37 37 H 1.09004 * 110.45546 * 334.20238 * 21 19 4 38 38 H 1.08998 * 110.61609 * 211.60794 * 21 19 4 39 39 H 1.08999 * 110.37109 * 217.06778 * 22 21 19 40 40 H 1.09000 * 110.46405 * 94.77750 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1227 1.4106 0.0000 4 6 2.1437 -0.9234 1.0637 5 1 1.4837 -1.7358 1.3679 6 8 2.7137 -0.2094 2.1922 7 6 2.7243 -0.8461 3.3739 8 8 2.2727 -1.9632 3.4622 9 6 3.2996 -0.1675 4.5903 10 6 3.1901 -1.1032 5.7958 11 6 3.7659 -0.4249 7.0122 12 1 4.1699 0.5736 6.9331 13 6 3.7723 -1.0768 8.2270 14 7 4.2743 -0.4847 9.2886 15 14 3.0664 -2.8008 8.3653 16 1 4.1374 -3.7965 8.1064 17 1 2.5212 -3.0044 9.7316 18 1 1.9795 -2.9722 7.3681 19 6 3.1844 -1.3394 0.0114 20 1 4.1285 -0.7946 0.0225 21 6 3.2979 -2.8697 -0.1511 22 6 2.3220 -3.2013 -1.3014 23 8 1.3679 -2.1175 -1.2999 24 6 2.1433 -0.9247 -1.0618 25 1 2.5183 -0.4342 -1.9602 26 1 -0.3633 0.6403 0.8038 27 1 -0.3634 0.3758 -0.9564 28 1 -0.3632 -1.0163 0.1528 29 1 3.2003 1.3518 0.1527 30 1 1.9169 1.8911 -0.9564 31 1 1.6731 1.9935 0.8038 32 1 2.7461 0.7499 4.7905 33 1 4.3477 0.0723 4.4109 34 1 3.7439 -2.0204 5.5955 35 1 2.1422 -1.3434 5.9753 36 1 4.2784 -0.9433 10.1433 37 1 2.9925 -3.3738 0.7658 38 1 4.3155 -3.1526 -0.4204 39 1 1.8194 -4.1496 -1.1111 40 1 2.8527 -3.2382 -2.2528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813070755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:36 Heat of formation + Delta-G solvation = -138.574827 kcal Electronic energy + Delta-G solvation = -21141.797310 eV Core-core repulsion = 17921.365913 eV Total energy + Delta-G solvation = -3220.431397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54351 -40.98251 -37.84397 -36.27183 -35.64998 -33.46365 -33.08523 -29.94578 -28.64798 -28.34149 -26.10711 -24.14471 -23.57561 -21.83907 -21.42536 -19.74421 -19.41425 -18.52933 -17.60742 -17.46440 -16.70408 -16.54581 -16.30617 -15.95959 -15.38138 -14.92290 -14.81797 -14.56358 -14.32111 -14.27532 -13.55944 -13.39107 -13.17199 -13.06698 -12.95158 -12.82124 -12.72042 -12.38786 -12.24248 -12.04822 -11.98238 -11.83153 -11.71458 -11.48806 -11.45692 -11.34622 -10.84399 -10.80101 -10.60901 -8.33541 -6.37633 1.19617 1.31964 1.34449 1.48022 1.71681 2.32665 2.57701 3.01856 3.07056 3.35558 3.44562 3.75116 3.84577 3.98956 4.08808 4.17358 4.22136 4.28131 4.36978 4.37812 4.42246 4.58572 4.72862 4.76578 4.81779 4.87267 4.87679 4.96078 5.02353 5.05652 5.12662 5.24175 5.29898 5.33721 5.42303 5.45680 5.58475 5.83622 6.19826 6.67614 6.80558 7.27700 8.82067 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.004276 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.193160 B = 6546.773480 C = 6987.319383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.119 4.119 4 C 0.059 3.941 5 H 0.085 0.915 6 O -0.337 6.337 7 C 0.465 3.535 8 O -0.544 6.544 9 C -0.091 4.091 10 C 0.003 3.997 11 C -0.532 4.532 12 H 0.053 0.947 13 C 0.017 3.983 14 N -0.941 5.941 15 Si 0.937 3.063 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.261 1.261 19 C -0.146 4.146 20 H 0.133 0.867 21 C -0.154 4.154 22 C 0.048 3.952 23 O -0.379 6.379 24 C 0.069 3.931 25 H 0.131 0.869 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -0.156 -25.967 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.176 4.176 4 C 0.004 3.996 5 H 0.103 0.897 6 O -0.253 6.253 7 C 0.310 3.690 8 O -0.434 6.434 9 C -0.128 4.128 10 C -0.035 4.035 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.581 5.581 15 Si 0.761 3.239 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.165 4.165 20 H 0.151 0.849 21 C -0.191 4.191 22 C -0.028 4.028 23 O -0.299 6.299 24 C 0.011 3.989 25 H 0.149 0.851 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.849 -0.535 -25.824 26.115 hybrid contribution -0.109 -1.056 0.948 1.423 sum -3.958 -1.590 -24.876 25.239 Atomic orbital electron populations 1.21633 0.92987 1.01589 1.02772 1.22255 0.96788 0.96084 0.91777 1.21449 1.01196 0.91759 1.03201 1.24855 0.96367 0.95990 0.82384 0.89744 1.86602 1.73834 1.47182 1.17687 1.24405 0.74775 0.84622 0.85165 1.90591 1.45205 1.21648 1.85969 1.21331 1.03433 1.00273 0.87779 1.19309 0.96709 0.95138 0.92334 1.21332 1.39727 1.02732 0.93149 0.92917 1.25762 0.95083 1.01824 0.95421 1.70011 1.47324 1.39928 1.00881 0.85855 0.79840 0.80479 0.77711 1.19184 1.20296 1.18556 1.24552 0.99545 0.97031 0.95342 0.84881 1.22932 1.02113 0.94568 0.99512 1.23635 0.90076 0.90952 0.98142 1.89012 1.31397 1.16080 1.93376 1.24100 0.90771 0.87727 0.96259 0.85138 0.92615 0.90241 0.93509 0.91533 0.89731 0.91979 0.86931 0.86729 0.96720 0.96755 0.92245 0.92688 0.88228 0.88591 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.79 71.99 0.63 -2.08 16 2 C -0.07 -1.39 1.32 -51.77 -0.07 -1.46 16 3 C -0.12 -1.94 8.42 71.98 0.61 -1.34 16 4 C 0.06 1.58 2.92 31.06 0.09 1.67 16 5 H 0.08 2.77 6.73 -2.39 -0.02 2.75 16 6 O -0.34 -10.33 9.34 -51.43 -0.48 -10.81 16 7 C 0.47 17.33 7.96 71.23 0.57 17.90 16 8 O -0.54 -23.68 15.17 21.98 0.33 -23.35 16 9 C -0.09 -3.50 5.75 29.85 0.17 -3.33 16 10 C 0.00 0.13 3.33 29.85 0.10 0.23 16 11 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 12 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 13 C 0.02 1.01 5.47 84.65 0.46 1.48 16 14 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 15 Si 0.94 45.97 27.47 68.60 1.88 47.86 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16 19 C -0.15 -2.98 4.50 -9.36 -0.04 -3.02 16 20 H 0.13 2.34 8.02 -2.38 -0.02 2.32 16 21 C -0.15 -2.99 6.63 31.53 0.21 -2.78 16 22 C 0.05 0.80 7.63 72.48 0.55 1.35 16 23 O -0.38 -8.06 10.28 -148.98 -1.53 -9.60 16 24 C 0.07 1.22 4.75 31.53 0.15 1.37 16 25 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.11 7.56 -2.38 -0.02 1.09 16 29 H 0.07 1.08 7.55 -2.39 -0.02 1.06 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 33 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 34 H 0.01 0.72 7.54 -2.39 -0.02 0.71 16 35 H 0.01 0.72 7.14 -2.39 -0.02 0.70 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.05 1.38 7.90 -2.38 -0.02 1.37 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.61 324.28 5.14 -64.47 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.95 Total: 9.59 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.68 Total: -20.08 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.30 Total: -58.10 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.68 Total: -43.75 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.86 kcal Total: -69.61 5.14 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.100 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds