Wall clock time and date at job start Mon Mar 30 2020 07:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 112.78797 * 2 1 4 4 C 1.53576 * 113.53867 * 228.94736 * 2 1 3 5 5 H 1.09009 * 115.86673 * 101.87617 * 4 2 1 6 6 O 1.44247 * 113.40517 * 325.84557 * 4 2 1 7 7 C 1.44400 * 105.40200 * 226.31646 * 6 4 2 8 8 C 1.54452 * 104.80338 * 40.57874 * 7 6 4 9 9 C 1.54453 * 104.21655 * 335.87028 * 8 7 6 10 10 H 1.08997 * 115.80155 * 230.49503 * 9 8 7 11 11 C 1.53653 * 113.53646 * 130.95632 * 2 1 3 12 12 H 1.09001 * 113.53405 * 253.97376 * 11 2 1 13 13 O 1.45202 * 113.53386 * 24.55400 * 11 2 1 14 14 C 1.34230 * 116.99832 * 208.71716 * 13 11 2 15 15 O 1.20823 * 119.99932 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00103 * 179.97438 * 14 13 11 17 17 C 1.52997 * 109.47460 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47460 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00306 * 22 20 18 25 25 H 1.48504 * 109.46636 * 59.99865 * 22 20 18 26 26 H 1.08996 * 109.47391 * 308.54443 * 1 2 3 27 27 H 1.08997 * 109.47021 * 68.55022 * 1 2 3 28 28 H 1.09006 * 109.46858 * 188.54036 * 1 2 3 29 29 H 1.09007 * 109.47006 * 171.45086 * 3 2 1 30 30 H 1.08993 * 109.47490 * 291.45312 * 3 2 1 31 31 H 1.09005 * 109.47385 * 51.45336 * 3 2 1 32 32 H 1.08999 * 110.37290 * 159.40993 * 7 6 4 33 33 H 1.09002 * 110.36975 * 281.75036 * 7 6 4 34 34 H 1.08997 * 110.49841 * 94.53416 * 8 7 6 35 35 H 1.09007 * 110.49945 * 217.07537 * 8 7 6 36 36 H 1.09003 * 109.47519 * 59.99659 * 16 14 13 37 37 H 1.08999 * 109.47517 * 299.99938 * 16 14 13 38 38 H 1.09005 * 109.46800 * 60.00471 * 17 16 14 39 39 H 1.08998 * 109.47382 * 300.00270 * 17 16 14 40 40 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1226 1.4106 0.0000 4 6 2.1434 -0.9247 -1.0618 5 1 2.5184 -0.4342 -1.9602 6 8 1.3679 -2.1175 -1.2997 7 6 2.3221 -3.2013 -1.3013 8 6 3.2979 -2.8697 -0.1509 9 6 3.1855 -1.3379 0.0120 10 1 4.1286 -0.7916 0.0234 11 6 2.1436 -0.9234 1.0639 12 1 2.5704 -0.3873 1.9116 13 8 1.2650 -2.0065 1.4678 14 6 1.4106 -2.4756 2.7171 15 8 2.2449 -1.9973 3.4485 16 6 0.5336 -3.5988 3.2072 17 6 0.9026 -3.9407 4.6521 18 6 0.0260 -5.0643 5.1420 19 1 -0.7201 -5.4915 4.4884 20 6 0.1756 -5.5462 6.4252 21 7 1.0837 -5.0256 7.2213 22 14 -0.9115 -6.9385 7.0327 23 1 -0.5533 -7.2704 8.4350 24 1 -2.3345 -6.5185 6.9710 25 1 -0.7105 -8.1338 6.1748 26 1 -0.3634 0.6403 0.8037 27 1 -0.3633 0.3758 -0.9565 28 1 -0.3633 -1.0163 0.1526 29 1 3.2003 1.3519 0.1528 30 1 1.9169 1.8911 -0.9564 31 1 1.6730 1.9936 0.8038 32 1 1.8195 -4.1496 -1.1110 33 1 2.8542 -3.2369 -2.2519 34 1 2.9925 -3.3738 0.7659 35 1 4.3156 -3.1526 -0.4202 36 1 0.6811 -4.4762 2.5776 37 1 -0.5109 -3.2905 3.1618 38 1 0.7553 -3.0634 5.2820 39 1 1.9470 -4.2491 4.6972 40 1 1.1888 -5.3644 8.1242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813070756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:40 Heat of formation + Delta-G solvation = -116.237186 kcal Electronic energy + Delta-G solvation = -21428.025932 eV Core-core repulsion = 18208.563167 eV Total energy + Delta-G solvation = -3219.462764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51594 -39.31953 -36.35343 -35.17260 -33.56853 -32.05113 -31.10528 -28.99314 -27.46464 -26.31657 -24.80080 -23.21259 -22.21355 -20.74558 -19.71736 -18.61254 -17.44774 -16.60798 -16.28295 -16.10603 -15.58114 -15.29387 -14.89808 -14.47292 -14.08829 -13.64399 -13.34402 -13.09441 -12.64723 -12.56117 -12.32539 -12.27277 -12.22106 -11.79284 -11.34141 -11.25023 -11.06918 -11.04517 -10.93274 -10.67860 -10.60083 -10.31112 -10.04428 -9.90525 -9.81904 -9.62396 -9.47202 -9.18053 -8.36858 -6.00857 -4.05735 2.84334 3.03508 3.33406 3.37981 3.40224 3.59153 4.09025 4.37575 4.44465 4.53351 4.77659 4.93152 4.99158 5.08151 5.15470 5.21906 5.33885 5.34512 5.43179 5.50393 5.58037 5.66950 5.75188 5.81684 5.82682 5.90785 5.99230 6.05967 6.14289 6.19424 6.23386 6.49379 6.70067 6.84157 7.02871 7.66821 7.74057 7.98658 8.28193 8.45549 9.01192 9.58266 11.10143 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.004245 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.184689 B = 6594.977111 C = 6814.645530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.127 4.127 4 C 0.062 3.938 5 H 0.090 0.910 6 O -0.344 6.344 7 C 0.054 3.946 8 C -0.144 4.144 9 C -0.154 4.154 10 H 0.118 0.882 11 C 0.078 3.922 12 H 0.096 0.904 13 O -0.326 6.326 14 C 0.452 3.548 15 O -0.507 6.507 16 C -0.102 4.102 17 C 0.034 3.966 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.896 3.104 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 9.640 -18.526 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.184 4.184 4 C 0.004 3.996 5 H 0.108 0.892 6 O -0.263 6.263 7 C -0.023 4.023 8 C -0.181 4.181 9 C -0.172 4.172 10 H 0.136 0.864 11 C 0.022 3.978 12 H 0.114 0.886 13 O -0.243 6.243 14 C 0.296 3.704 15 O -0.393 6.393 16 C -0.140 4.140 17 C -0.003 4.003 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.723 3.277 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.351 9.764 -18.160 20.889 hybrid contribution -0.089 -0.713 0.519 0.886 sum 3.262 9.050 -17.641 20.094 Atomic orbital electron populations 1.21503 0.92540 1.03604 1.00992 1.22091 0.97776 0.93870 0.94063 1.21549 1.00730 0.93375 1.02725 1.24151 0.91596 0.88543 0.95359 0.89245 1.89059 1.29615 1.14645 1.92946 1.23394 0.90429 0.91727 0.96734 1.22758 1.00093 0.94867 1.00406 1.24487 0.98313 0.97104 0.97316 0.86443 1.23435 0.90287 0.87779 0.96301 0.88596 1.86670 1.56866 1.48189 1.32562 1.24862 0.83150 0.83598 0.78789 1.90614 1.34851 1.57848 1.56036 1.21744 0.97998 0.92624 1.01622 1.18999 0.97618 0.97073 0.86592 1.21121 1.19186 1.18096 0.98282 0.92376 1.25013 0.95468 0.96978 0.96795 1.69987 1.33378 1.41893 1.07581 0.86605 0.80864 0.82417 0.77796 1.21255 1.20146 1.20166 0.92910 0.92731 0.90364 0.92105 0.91470 0.91418 0.88871 0.92727 0.90216 0.90761 0.89117 0.89005 0.95651 0.95690 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.60 37.16 0.32 -1.24 16 2 C -0.08 -0.89 1.32 -153.87 -0.20 -1.09 16 3 C -0.13 -1.09 9.08 37.16 0.34 -0.75 16 4 C 0.06 0.69 4.75 -25.25 -0.12 0.57 16 5 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 6 O -0.34 -4.60 9.67 -48.73 -0.47 -5.07 16 7 C 0.05 0.61 7.62 37.92 0.29 0.90 16 8 C -0.14 -1.73 6.28 -25.21 -0.16 -1.89 16 9 C -0.15 -1.80 4.68 -88.28 -0.41 -2.21 16 10 H 0.12 1.13 8.02 -51.93 -0.42 0.71 16 11 C 0.08 1.11 3.58 -26.00 -0.09 1.02 16 12 H 0.10 1.49 7.05 -51.93 -0.37 1.12 16 13 O -0.33 -5.52 6.63 -44.34 -0.29 -5.81 16 14 C 0.45 9.05 7.38 36.00 0.27 9.32 16 15 O -0.51 -11.65 15.17 -18.75 -0.28 -11.94 16 16 C -0.10 -2.13 5.75 -27.89 -0.16 -2.29 16 17 C 0.03 0.91 4.26 -27.89 -0.12 0.80 16 18 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.12 6.61 -51.93 -0.34 0.77 16 29 H 0.06 0.47 7.64 -51.92 -0.40 0.08 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.17 6.65 -51.93 -0.35 0.83 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -32.40 323.12 -7.41 -39.81 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.48 Total: -1.52 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.47 Total: -10.45 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -1.05 Total: -22.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.40 -7.41 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.430 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds