Wall clock time and date at job start Mon Mar 30 2020 07:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 112.78797 * 2 1 4 4 C 1.53576 * 113.53867 * 228.94736 * 2 1 3 5 5 H 1.09009 * 115.86673 * 101.87617 * 4 2 1 6 6 O 1.44247 * 113.40517 * 325.84557 * 4 2 1 7 7 C 1.44400 * 105.40200 * 226.31646 * 6 4 2 8 8 C 1.54452 * 104.80338 * 40.57874 * 7 6 4 9 9 C 1.54453 * 104.21655 * 335.87028 * 8 7 6 10 10 H 1.08997 * 115.80155 * 230.49503 * 9 8 7 11 11 C 1.53653 * 113.53646 * 130.95632 * 2 1 3 12 12 H 1.09001 * 113.53405 * 253.97376 * 11 2 1 13 13 O 1.45202 * 113.53386 * 24.55400 * 11 2 1 14 14 C 1.34230 * 116.99832 * 208.71716 * 13 11 2 15 15 O 1.20823 * 119.99932 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00103 * 179.97438 * 14 13 11 17 17 C 1.52997 * 109.47460 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47460 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00306 * 22 20 18 25 25 H 1.48504 * 109.46636 * 59.99865 * 22 20 18 26 26 H 1.08996 * 109.47391 * 308.54443 * 1 2 3 27 27 H 1.08997 * 109.47021 * 68.55022 * 1 2 3 28 28 H 1.09006 * 109.46858 * 188.54036 * 1 2 3 29 29 H 1.09007 * 109.47006 * 171.45086 * 3 2 1 30 30 H 1.08993 * 109.47490 * 291.45312 * 3 2 1 31 31 H 1.09005 * 109.47385 * 51.45336 * 3 2 1 32 32 H 1.08999 * 110.37290 * 159.40993 * 7 6 4 33 33 H 1.09002 * 110.36975 * 281.75036 * 7 6 4 34 34 H 1.08997 * 110.49841 * 94.53416 * 8 7 6 35 35 H 1.09007 * 110.49945 * 217.07537 * 8 7 6 36 36 H 1.09003 * 109.47519 * 59.99659 * 16 14 13 37 37 H 1.08999 * 109.47517 * 299.99938 * 16 14 13 38 38 H 1.09005 * 109.46800 * 60.00471 * 17 16 14 39 39 H 1.08998 * 109.47382 * 300.00270 * 17 16 14 40 40 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1226 1.4106 0.0000 4 6 2.1434 -0.9247 -1.0618 5 1 2.5184 -0.4342 -1.9602 6 8 1.3679 -2.1175 -1.2997 7 6 2.3221 -3.2013 -1.3013 8 6 3.2979 -2.8697 -0.1509 9 6 3.1855 -1.3379 0.0120 10 1 4.1286 -0.7916 0.0234 11 6 2.1436 -0.9234 1.0639 12 1 2.5704 -0.3873 1.9116 13 8 1.2650 -2.0065 1.4678 14 6 1.4106 -2.4756 2.7171 15 8 2.2449 -1.9973 3.4485 16 6 0.5336 -3.5988 3.2072 17 6 0.9026 -3.9407 4.6521 18 6 0.0260 -5.0643 5.1420 19 1 -0.7201 -5.4915 4.4884 20 6 0.1756 -5.5462 6.4252 21 7 1.0837 -5.0256 7.2213 22 14 -0.9115 -6.9385 7.0327 23 1 -0.5533 -7.2704 8.4350 24 1 -2.3345 -6.5185 6.9710 25 1 -0.7105 -8.1338 6.1748 26 1 -0.3634 0.6403 0.8037 27 1 -0.3633 0.3758 -0.9565 28 1 -0.3633 -1.0163 0.1526 29 1 3.2003 1.3519 0.1528 30 1 1.9169 1.8911 -0.9564 31 1 1.6730 1.9936 0.8038 32 1 1.8195 -4.1496 -1.1110 33 1 2.8542 -3.2369 -2.2519 34 1 2.9925 -3.3738 0.7659 35 1 4.3156 -3.1526 -0.4202 36 1 0.6811 -4.4762 2.5776 37 1 -0.5109 -3.2905 3.1618 38 1 0.7553 -3.0634 5.2820 39 1 1.9470 -4.2491 4.6972 40 1 1.1888 -5.3644 8.1242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813070756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:39 Heat of formation + Delta-G solvation = -135.103070 kcal Electronic energy + Delta-G solvation = -21428.844018 eV Core-core repulsion = 18208.563167 eV Total energy + Delta-G solvation = -3220.280850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.58690 -40.79552 -37.57550 -36.38592 -35.66934 -33.19746 -32.94097 -29.90444 -28.43935 -28.05159 -26.10213 -24.10050 -24.03847 -21.88872 -21.24081 -19.69629 -19.12218 -18.17533 -17.69543 -17.30955 -16.79511 -16.56230 -16.48824 -15.97113 -15.39312 -14.76979 -14.50096 -14.31907 -14.12986 -14.04820 -13.66684 -13.32986 -13.13241 -13.04320 -12.83108 -12.74980 -12.57255 -12.54853 -12.06851 -12.03385 -11.98200 -11.77699 -11.60124 -11.44398 -11.31111 -11.28418 -10.84412 -10.58602 -10.46703 -8.21412 -6.35692 1.22323 1.42048 1.46548 1.54098 1.67540 2.42092 2.70463 3.12174 3.13138 3.39651 3.54222 3.86281 3.90231 4.07188 4.16109 4.22339 4.30243 4.34710 4.39799 4.41511 4.46202 4.63757 4.77349 4.79893 4.86383 4.90808 4.92466 4.97806 5.07748 5.09902 5.13517 5.28956 5.42486 5.50994 5.51420 5.52790 5.77923 5.98060 6.11346 6.78873 6.86834 7.34673 8.91121 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.004245 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.184689 B = 6594.977111 C = 6814.645530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.123 4.123 4 C 0.068 3.932 5 H 0.122 0.878 6 O -0.370 6.370 7 C 0.053 3.947 8 C -0.148 4.148 9 C -0.149 4.149 10 H 0.143 0.857 11 C 0.051 3.949 12 H 0.077 0.923 13 O -0.318 6.318 14 C 0.462 3.538 15 O -0.545 6.545 16 C -0.094 4.094 17 C 0.042 3.958 18 C -0.547 4.547 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.263 1.263 25 H -0.262 1.262 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.111 0.889 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 9.652 -20.904 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.180 4.180 4 C 0.010 3.990 5 H 0.140 0.860 6 O -0.289 6.289 7 C -0.023 4.023 8 C -0.185 4.185 9 C -0.168 4.168 10 H 0.161 0.839 11 C -0.005 4.005 12 H 0.096 0.904 13 O -0.234 6.234 14 C 0.307 3.693 15 O -0.435 6.435 16 C -0.131 4.131 17 C 0.005 3.995 18 C -0.584 4.584 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.211 1.211 24 H -0.188 1.188 25 H -0.187 1.187 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.805 9.783 -20.583 22.961 hybrid contribution 0.114 -0.653 1.219 1.387 sum 2.919 9.130 -19.364 21.606 Atomic orbital electron populations 1.21481 0.93216 1.01992 1.01942 1.22234 0.97344 0.95047 0.92539 1.21582 1.01170 0.91306 1.03979 1.24298 0.90633 0.87840 0.96192 0.86031 1.89032 1.30993 1.15767 1.93097 1.23498 0.90056 0.91131 0.97598 1.22784 1.01564 0.94895 0.99289 1.24598 0.98938 0.97183 0.96049 0.83906 1.23959 0.91819 0.87770 0.96927 0.90450 1.86624 1.57399 1.49000 1.30329 1.24520 0.82203 0.83076 0.79504 1.90598 1.36438 1.59121 1.57370 1.21481 0.99079 0.94117 0.98410 1.18756 0.95564 0.95417 0.89755 1.21593 1.19541 1.18345 0.98939 0.90623 1.26091 0.96912 0.99950 0.97029 1.70156 1.35456 1.43817 1.08074 0.85361 0.78940 0.78783 0.77112 1.21131 1.18763 1.18702 0.93022 0.90941 0.92988 0.91045 0.89084 0.91732 0.89345 0.89918 0.93674 0.88576 0.87073 0.87122 0.99331 0.99248 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.60 71.98 0.62 -2.35 16 2 C -0.07 -1.50 1.32 -51.77 -0.07 -1.57 16 3 C -0.12 -1.79 9.08 71.98 0.65 -1.13 16 4 C 0.07 1.33 4.75 31.56 0.15 1.48 16 5 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 6 O -0.37 -9.17 9.67 -136.07 -1.32 -10.48 16 7 C 0.05 1.11 7.62 72.48 0.55 1.66 16 8 C -0.15 -3.38 6.28 31.58 0.20 -3.18 16 9 C -0.15 -3.22 4.68 -9.28 -0.04 -3.26 16 10 H 0.14 2.33 8.02 -2.39 -0.02 2.31 16 11 C 0.05 1.44 3.58 31.06 0.11 1.55 16 12 H 0.08 2.47 7.05 -2.39 -0.02 2.45 16 13 O -0.32 -10.94 6.63 -46.56 -0.31 -11.25 16 14 C 0.46 19.20 7.38 71.23 0.53 19.73 16 15 O -0.55 -26.50 15.17 21.97 0.33 -26.17 16 16 C -0.09 -3.99 5.75 29.85 0.17 -3.82 16 17 C 0.04 2.36 4.26 29.85 0.13 2.49 16 18 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 19 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.94 -58.76 13.29 21.45 0.28 -58.47 16 22 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.46 6.61 -2.38 -0.02 1.45 16 29 H 0.07 0.90 7.64 -2.38 -0.02 0.88 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.35 6.65 -2.39 -0.02 1.33 16 35 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 37 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 38 H -0.01 -0.73 8.10 -2.38 -0.02 -0.75 16 39 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 40 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -73.04 323.12 5.72 -67.32 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.01 Total: 11.85 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 3.69 Total: -18.97 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.28 Total: -58.47 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.29 Total: -47.90 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.04 5.72 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.785 kcal (2) G-P(sol) polarization free energy of solvation -73.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds