Wall clock time and date at job start Mon Mar 30 2020 07:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 113.52573 * 2 1 4 4 C 1.56558 * 114.55813 * 225.72395 * 2 1 3 5 5 H 1.09000 * 114.55688 * 88.95195 * 4 2 1 6 6 O 1.45203 * 114.56098 * 315.16920 * 4 2 1 7 7 C 1.34228 * 117.00428 * 158.98794 * 6 4 2 8 8 O 1.20831 * 119.99679 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00017 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.46742 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00305 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99853 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00267 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47006 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47035 * 119.99850 * 15 13 11 18 18 H 1.48497 * 109.47307 * 239.99936 * 15 13 11 19 19 C 1.50324 * 81.31496 * 202.05807 * 4 2 1 20 20 H 1.08994 * 114.49625 * 288.94304 * 19 4 2 21 21 C 1.51863 * 127.87806 * 133.34885 * 19 4 2 22 22 C 1.55786 * 102.15682 * 241.64512 * 21 19 4 23 23 O 1.46082 * 105.44675 * 6.35860 * 22 21 19 24 24 C 1.40076 * 103.53570 * 30.04092 * 23 22 21 25 25 H 1.08995 * 110.77819 * 66.73788 * 24 23 22 26 26 H 1.09001 * 109.47176 * 285.78724 * 1 2 3 27 27 H 1.08999 * 109.47133 * 45.78324 * 1 2 3 28 28 H 1.08992 * 109.47026 * 165.78705 * 1 2 3 29 29 H 1.09002 * 109.46980 * 211.60947 * 3 2 1 30 30 H 1.08992 * 109.47829 * 331.60949 * 3 2 1 31 31 H 1.09003 * 109.47073 * 91.61380 * 3 2 1 32 32 H 1.08999 * 109.47164 * 299.99715 * 9 7 6 33 33 H 1.08998 * 109.46980 * 60.00179 * 9 7 6 34 34 H 1.09001 * 109.47118 * 299.99208 * 10 9 7 35 35 H 1.08998 * 109.47547 * 60.00147 * 10 9 7 36 36 H 0.96994 * 120.00470 * 179.97438 * 14 13 11 37 37 H 1.08999 * 110.86789 * 359.81313 * 21 19 4 38 38 H 1.09004 * 110.86396 * 123.48196 * 21 19 4 39 39 H 1.09000 * 110.25291 * 125.35160 * 22 21 19 40 40 H 1.09000 * 110.25148 * 247.36654 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9941 -1.0195 5 1 2.3525 -0.5773 -2.0119 6 8 1.5797 -2.3157 -1.0413 7 6 1.7738 -3.0554 -2.1444 8 8 2.4248 -2.6134 -3.0613 9 6 1.1808 -4.4376 -2.2387 10 6 1.5493 -5.0596 -3.5872 11 6 0.9557 -6.4416 -3.6818 12 1 0.3735 -6.8365 -2.8624 13 6 1.1550 -7.2013 -4.8150 14 7 1.8626 -6.7199 -5.8135 15 14 0.4198 -8.9146 -4.9320 16 1 -0.3273 -9.2189 -3.6852 17 1 -0.5061 -8.9778 -6.0913 18 1 1.5079 -9.9089 -5.1128 19 6 3.3390 -0.8499 -0.0723 20 1 3.8344 0.1203 -0.1085 21 6 4.2026 -1.9504 0.5190 22 6 3.9366 -1.7915 2.0457 23 8 2.8851 -0.7833 2.1546 24 6 2.1504 -0.9469 0.9733 25 1 1.6426 -1.9112 0.9641 26 1 -0.3633 0.2796 0.9889 27 1 -0.3633 0.7167 -0.7365 28 1 -0.3633 -0.9961 -0.2523 29 1 3.0883 1.3866 -0.5386 30 1 1.4570 2.0969 -0.4886 31 1 2.3123 1.7244 1.0273 32 1 1.5744 -5.0576 -1.4333 33 1 0.0961 -4.3743 -2.1517 34 1 1.1559 -4.4398 -4.3929 35 1 2.6339 -5.1230 -3.6739 36 1 2.0032 -7.2545 -6.6105 37 1 3.8775 -2.9298 0.1681 38 1 5.2550 -1.7839 0.2889 39 1 3.5983 -2.7368 2.4701 40 1 4.8395 -1.4512 2.5526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813070757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:43 Heat of formation + Delta-G solvation = -51.229620 kcal Electronic energy + Delta-G solvation = -21207.943325 eV Core-core repulsion = 17991.299500 eV Total energy + Delta-G solvation = -3216.643825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.38479 -39.57801 -37.02036 -35.41050 -33.62538 -31.97201 -31.16968 -29.12425 -27.93668 -26.22213 -24.63243 -23.44657 -22.41924 -20.38051 -19.83193 -19.02739 -17.50910 -16.65576 -16.36776 -16.05859 -15.70310 -15.31083 -14.85486 -14.51614 -14.48170 -14.01419 -13.64170 -13.19352 -12.82181 -12.45679 -12.42507 -12.27534 -11.89523 -11.73310 -11.59730 -11.47737 -11.27468 -11.07289 -11.00221 -10.68102 -10.64533 -10.13287 -10.09431 -9.93649 -9.86344 -9.58829 -9.20415 -9.10496 -8.41304 -6.04775 -4.09867 2.70704 2.76992 2.98174 3.28705 3.36266 3.39698 3.98857 4.20749 4.41415 4.58262 4.70128 4.77904 4.88795 5.02210 5.13945 5.24683 5.30652 5.30922 5.31376 5.48315 5.60363 5.64481 5.65592 5.72895 5.77323 5.85304 5.92162 6.03040 6.05154 6.08084 6.13493 6.23588 6.60453 6.79202 6.88572 7.62749 7.68637 7.94181 8.19683 8.35311 8.97378 9.54589 11.06263 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.003989 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.249294 B = 7017.293988 C = 7258.655654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.132 4.132 4 C 0.088 3.912 5 H 0.106 0.894 6 O -0.340 6.340 7 C 0.456 3.544 8 O -0.499 6.499 9 C -0.102 4.102 10 C 0.033 3.967 11 C -0.529 4.529 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.208 4.208 20 H 0.131 0.869 21 C -0.137 4.137 22 C 0.051 3.949 23 O -0.361 6.361 24 C 0.032 3.968 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 13.849 14.392 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.189 4.189 4 C 0.032 3.968 5 H 0.123 0.877 6 O -0.258 6.258 7 C 0.299 3.701 8 O -0.384 6.384 9 C -0.140 4.140 10 C -0.004 4.004 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.227 4.227 20 H 0.148 0.852 21 C -0.175 4.175 22 C -0.025 4.025 23 O -0.280 6.280 24 C -0.026 4.026 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.389 14.103 14.128 20.010 hybrid contribution -0.128 -1.086 -0.337 1.144 sum 1.261 13.017 13.791 19.006 Atomic orbital electron populations 1.21778 0.92715 1.03208 1.02149 1.22156 0.96191 0.94143 0.91734 1.21831 1.00766 0.93016 1.03244 1.22882 0.92522 0.82643 0.98718 0.87672 1.86576 1.70029 1.26528 1.42690 1.24899 0.77754 0.88586 0.78858 1.90635 1.37248 1.72047 1.38483 1.21789 1.01407 0.86218 1.04567 1.19026 0.97980 0.94969 0.88434 1.21181 1.33465 0.99855 1.02185 0.92251 1.25016 0.95167 0.98415 0.95668 1.69996 1.39262 1.37327 1.06161 0.86493 0.78957 0.84183 0.78099 1.19632 1.20934 1.20943 1.24817 0.95571 1.01582 1.00685 0.85169 1.22254 1.00536 0.99712 0.94953 1.24129 0.90480 0.91852 0.96011 1.88430 1.42436 1.56873 1.40248 1.24271 0.96031 0.99795 0.82512 0.87861 0.91914 0.91959 0.91156 0.91258 0.91655 0.90772 0.88993 0.88856 0.95550 0.95589 0.92866 0.90400 0.90552 0.91599 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.30 37.16 0.35 -1.12 16 2 C -0.04 -0.47 1.58 -166.67 -0.26 -0.73 16 3 C -0.13 -1.19 8.79 37.16 0.33 -0.86 16 4 C 0.09 1.22 4.04 -39.61 -0.16 1.06 16 5 H 0.11 1.55 7.27 -51.93 -0.38 1.17 16 6 O -0.34 -5.39 7.54 -39.25 -0.30 -5.69 16 7 C 0.46 8.72 7.96 36.01 0.29 9.01 16 8 O -0.50 -11.13 15.25 -18.75 -0.29 -11.42 16 9 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 10 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 11 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.21 -2.57 4.27 -101.69 -0.43 -3.01 16 20 H 0.13 1.42 5.28 -51.93 -0.27 1.15 16 21 C -0.14 -1.62 6.78 -25.82 -0.18 -1.79 16 22 C 0.05 0.55 7.77 38.64 0.30 0.85 16 23 O -0.36 -4.67 11.48 -33.12 -0.38 -5.05 16 24 C 0.03 0.40 4.01 -38.92 -0.16 0.25 16 25 H 0.10 1.43 6.48 -51.93 -0.34 1.09 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.57 7.99 -51.93 -0.41 0.16 16 28 H 0.07 0.81 7.37 -51.93 -0.38 0.42 16 29 H 0.07 0.59 5.96 -51.93 -0.31 0.28 16 30 H 0.06 0.50 7.86 -51.93 -0.41 0.10 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.04 7.97 -51.93 -0.41 0.62 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -31.65 322.90 -7.26 -38.90 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.26 Total: -0.65 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.62 Total: -11.15 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.96 Total: -22.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.65 -7.26 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.325 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds