Wall clock time and date at job start Mon Mar 30 2020 07:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 113.52573 * 2 1 4 4 C 1.56558 * 114.55813 * 225.72395 * 2 1 3 5 5 H 1.09000 * 114.55688 * 88.95195 * 4 2 1 6 6 O 1.45203 * 114.56098 * 315.16920 * 4 2 1 7 7 C 1.34228 * 117.00428 * 158.98794 * 6 4 2 8 8 O 1.20831 * 119.99679 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00017 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.46742 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00305 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99853 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00267 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47006 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47035 * 119.99850 * 15 13 11 18 18 H 1.48497 * 109.47307 * 239.99936 * 15 13 11 19 19 C 1.50324 * 81.31496 * 202.05807 * 4 2 1 20 20 H 1.08994 * 114.49625 * 288.94304 * 19 4 2 21 21 C 1.51863 * 127.87806 * 133.34885 * 19 4 2 22 22 C 1.55786 * 102.15682 * 241.64512 * 21 19 4 23 23 O 1.46082 * 105.44675 * 6.35860 * 22 21 19 24 24 C 1.40076 * 103.53570 * 30.04092 * 23 22 21 25 25 H 1.08995 * 110.77819 * 66.73788 * 24 23 22 26 26 H 1.09001 * 109.47176 * 285.78724 * 1 2 3 27 27 H 1.08999 * 109.47133 * 45.78324 * 1 2 3 28 28 H 1.08992 * 109.47026 * 165.78705 * 1 2 3 29 29 H 1.09002 * 109.46980 * 211.60947 * 3 2 1 30 30 H 1.08992 * 109.47829 * 331.60949 * 3 2 1 31 31 H 1.09003 * 109.47073 * 91.61380 * 3 2 1 32 32 H 1.08999 * 109.47164 * 299.99715 * 9 7 6 33 33 H 1.08998 * 109.46980 * 60.00179 * 9 7 6 34 34 H 1.09001 * 109.47118 * 299.99208 * 10 9 7 35 35 H 1.08998 * 109.47547 * 60.00147 * 10 9 7 36 36 H 0.96994 * 120.00470 * 179.97438 * 14 13 11 37 37 H 1.08999 * 110.86789 * 359.81313 * 21 19 4 38 38 H 1.09004 * 110.86396 * 123.48196 * 21 19 4 39 39 H 1.09000 * 110.25291 * 125.35160 * 22 21 19 40 40 H 1.09000 * 110.25148 * 247.36654 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9941 -1.0195 5 1 2.3525 -0.5773 -2.0119 6 8 1.5797 -2.3157 -1.0413 7 6 1.7738 -3.0554 -2.1444 8 8 2.4248 -2.6134 -3.0613 9 6 1.1808 -4.4376 -2.2387 10 6 1.5493 -5.0596 -3.5872 11 6 0.9557 -6.4416 -3.6818 12 1 0.3735 -6.8365 -2.8624 13 6 1.1550 -7.2013 -4.8150 14 7 1.8626 -6.7199 -5.8135 15 14 0.4198 -8.9146 -4.9320 16 1 -0.3273 -9.2189 -3.6852 17 1 -0.5061 -8.9778 -6.0913 18 1 1.5079 -9.9089 -5.1128 19 6 3.3390 -0.8499 -0.0723 20 1 3.8344 0.1203 -0.1085 21 6 4.2026 -1.9504 0.5190 22 6 3.9366 -1.7915 2.0457 23 8 2.8851 -0.7833 2.1546 24 6 2.1504 -0.9469 0.9733 25 1 1.6426 -1.9112 0.9641 26 1 -0.3633 0.2796 0.9889 27 1 -0.3633 0.7167 -0.7365 28 1 -0.3633 -0.9961 -0.2523 29 1 3.0883 1.3866 -0.5386 30 1 1.4570 2.0969 -0.4886 31 1 2.3123 1.7244 1.0273 32 1 1.5744 -5.0576 -1.4333 33 1 0.0961 -4.3743 -2.1517 34 1 1.1559 -4.4398 -4.3929 35 1 2.6339 -5.1230 -3.6739 36 1 2.0032 -7.2545 -6.6105 37 1 3.8775 -2.9298 0.1681 38 1 5.2550 -1.7839 0.2889 39 1 3.5983 -2.7368 2.4701 40 1 4.8395 -1.4512 2.5526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813070757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:43 Heat of formation + Delta-G solvation = -69.652078 kcal Electronic energy + Delta-G solvation = -21208.742183 eV Core-core repulsion = 17991.299500 eV Total energy + Delta-G solvation = -3217.442683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.41403 -41.04932 -38.14497 -36.69560 -35.67044 -33.18640 -32.86757 -30.04526 -28.80276 -28.04639 -25.82305 -24.39189 -24.17010 -21.81849 -21.02676 -20.10290 -19.12270 -18.19791 -17.80935 -17.24272 -16.96562 -16.55862 -16.48277 -15.81153 -15.63678 -15.19313 -14.75103 -14.43772 -14.26806 -14.08128 -13.62853 -13.21936 -13.18564 -12.99184 -12.83650 -12.77512 -12.56014 -12.49380 -12.39664 -12.04270 -11.97135 -11.77392 -11.68617 -11.49975 -11.28163 -11.01700 -10.81393 -10.59871 -10.09148 -8.21304 -6.35136 1.17838 1.41226 1.43788 1.47421 1.57828 2.01955 2.41878 2.96696 3.12887 3.20237 3.58483 3.74331 3.86508 3.97052 4.01189 4.16556 4.20843 4.34526 4.38352 4.41021 4.44579 4.52561 4.71549 4.78463 4.82001 4.88353 4.90741 4.94025 5.01413 5.06322 5.13161 5.22396 5.36924 5.40269 5.46422 5.52661 5.78995 5.85386 6.11454 6.74862 6.84290 7.35451 8.91586 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.003989 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.249294 B = 7017.293988 C = 7258.655654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.130 4.130 4 C 0.066 3.934 5 H 0.093 0.907 6 O -0.328 6.328 7 C 0.466 3.534 8 O -0.538 6.538 9 C -0.093 4.093 10 C 0.039 3.961 11 C -0.544 4.544 12 H 0.077 0.923 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.254 1.254 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.211 4.211 20 H 0.150 0.850 21 C -0.141 4.141 22 C 0.052 3.948 23 O -0.371 6.371 24 C 0.033 3.967 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.117 0.883 34 H -0.010 1.010 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 14.077 16.343 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.186 4.186 4 C 0.011 3.989 5 H 0.111 0.889 6 O -0.245 6.245 7 C 0.311 3.689 8 O -0.427 6.427 9 C -0.131 4.131 10 C 0.002 3.998 11 C -0.581 4.581 12 H 0.095 0.905 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.797 3.203 16 H -0.177 1.177 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.229 4.229 20 H 0.167 0.833 21 C -0.179 4.179 22 C -0.023 4.023 23 O -0.290 6.290 24 C -0.026 4.026 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.640 14.341 16.124 21.589 hybrid contribution 0.147 -1.088 -0.910 1.426 sum 0.787 13.254 15.215 20.193 Atomic orbital electron populations 1.21808 0.92023 1.02806 1.03332 1.22196 0.96784 0.94501 0.89185 1.21862 1.01249 0.91569 1.03940 1.23233 0.94639 0.81884 0.99179 0.88897 1.86535 1.69729 1.27626 1.40580 1.24590 0.76820 0.88540 0.78987 1.90625 1.39079 1.72904 1.40081 1.21529 1.02941 0.86937 1.01653 1.18792 0.95374 0.94839 0.90788 1.21660 1.33313 1.00429 1.02729 0.90480 1.26076 0.95488 1.03239 0.95224 1.70157 1.40986 1.39383 1.07016 0.85279 0.78098 0.78195 0.78725 1.17709 1.20590 1.20606 1.24977 0.95660 1.02651 0.99600 0.83323 1.22305 1.01202 0.98434 0.95938 1.24257 0.90932 0.91944 0.95173 1.88415 1.42874 1.57440 1.40262 1.24178 0.96129 0.99608 0.82657 0.89595 0.90630 0.90624 0.92628 0.90821 0.89998 0.90117 0.86780 0.86530 0.99118 0.99208 0.92728 0.92482 0.89293 0.91118 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.30 71.98 0.67 -2.04 16 2 C -0.03 -0.55 1.58 -60.06 -0.10 -0.64 16 3 C -0.13 -2.00 8.79 71.98 0.63 -1.37 16 4 C 0.07 1.80 4.04 22.25 0.09 1.89 16 5 H 0.09 2.78 7.27 -2.39 -0.02 2.76 16 6 O -0.33 -10.40 7.54 -51.40 -0.39 -10.79 16 7 C 0.47 18.19 7.96 71.24 0.57 18.76 16 8 O -0.54 -25.06 15.25 21.95 0.33 -24.72 16 9 C -0.09 -3.73 5.75 29.85 0.17 -3.56 16 10 C 0.04 2.12 4.26 29.85 0.13 2.25 16 11 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 12 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 13 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 14 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 15 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 16 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 C -0.21 -4.98 4.27 -17.96 -0.08 -5.06 16 20 H 0.15 2.96 5.28 -2.39 -0.01 2.94 16 21 C -0.14 -3.21 6.78 31.18 0.21 -3.00 16 22 C 0.05 1.02 7.77 72.94 0.57 1.59 16 23 O -0.37 -8.85 11.48 -141.41 -1.62 -10.47 16 24 C 0.03 0.77 4.01 22.70 0.09 0.86 16 25 H 0.09 2.33 6.48 -2.39 -0.02 2.31 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.23 7.99 -2.39 -0.02 1.21 16 28 H 0.05 1.22 7.37 -2.39 -0.02 1.20 16 29 H 0.07 1.08 5.96 -2.39 -0.01 1.07 16 30 H 0.08 1.02 7.86 -2.39 -0.02 1.00 16 31 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 32 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 34 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 35 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.06 1.52 7.97 -2.39 -0.02 1.50 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.93 322.90 5.31 -64.63 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.02 Total: 13.42 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 3.65 Total: -19.92 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.28 Total: -57.62 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.68 Total: -45.98 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.93 5.31 -64.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813070757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.023 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds