Wall clock time and date at job start Mon Mar 30 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47167 * 299.99982 * 3 2 1 6 6 H 1.48501 * 109.47431 * 59.99831 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99784 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99450 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46867 * 179.97438 * 14 13 11 16 16 H 1.09004 * 115.55509 * 330.68969 * 15 14 13 17 17 C 1.53067 * 117.50405 * 116.39343 * 15 14 13 18 18 C 1.52697 * 59.92983 * 107.46426 * 17 15 14 19 19 C 1.53251 * 117.87801 * 107.76997 * 18 17 15 20 20 C 1.53327 * 108.48989 * 196.24796 * 19 18 17 21 21 O 1.42872 * 109.32561 * 306.04031 * 20 19 18 22 22 C 1.42867 * 114.52687 * 64.35512 * 21 20 19 23 23 C 1.53246 * 117.88224 * 252.22193 * 18 17 15 24 24 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46714 * 60.00582 * 9 7 2 26 26 H 1.09003 * 109.47502 * 300.00500 * 9 7 2 27 27 H 1.09003 * 109.46845 * 60.00520 * 10 9 7 28 28 H 1.09003 * 109.47104 * 300.00602 * 10 9 7 29 29 H 1.09001 * 109.46860 * 60.00352 * 14 13 11 30 30 H 1.08993 * 109.47426 * 299.99714 * 14 13 11 31 31 H 1.08998 * 117.50435 * 214.93941 * 17 15 14 32 32 H 1.09000 * 117.50679 * 359.97438 * 17 15 14 33 33 H 1.08999 * 109.63874 * 315.94855 * 19 18 17 34 34 H 1.08997 * 109.63526 * 76.54829 * 19 18 17 35 35 H 1.08999 * 109.49493 * 186.08635 * 20 19 18 36 36 H 1.08998 * 109.49669 * 65.99372 * 20 19 18 37 37 H 1.08994 * 109.49459 * 175.69042 * 22 21 20 38 38 H 1.09006 * 109.49434 * 55.59674 * 22 21 20 39 39 H 1.08997 * 109.63371 * 283.45244 * 23 18 17 40 40 H 1.08991 * 109.63203 * 44.05503 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2836 -4.9672 -0.0011 13 8 2.1630 -6.1296 -0.0008 14 6 1.3722 -7.3474 -0.0008 15 6 2.3042 -8.5608 -0.0010 16 1 3.2707 -8.4113 -0.4824 17 6 2.2563 -9.4891 1.2151 18 6 1.6636 -9.9422 -0.1172 19 6 2.4178 -11.0161 -0.9088 20 6 1.8916 -11.0180 -2.3489 21 8 0.4708 -11.1681 -2.3329 22 6 -0.2330 -10.0858 -1.7210 23 6 0.1374 -10.0154 -0.2348 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.7437 -7.3723 -0.8911 30 1 0.7431 -7.3721 0.8889 31 1 3.1911 -9.9506 1.5332 32 1 1.5610 -9.2351 2.0152 33 1 3.4841 -10.7899 -0.9089 34 1 2.2477 -11.9925 -0.4554 35 1 2.3387 -11.8464 -2.8985 36 1 2.1525 -10.0769 -2.8329 37 1 -1.3063 -10.2470 -1.8212 38 1 0.0421 -9.1508 -2.2091 39 1 -0.2269 -10.9067 0.2760 40 1 -0.3073 -9.1262 0.2117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813075575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:45 Heat of formation + Delta-G solvation = -131.571183 kcal Electronic energy + Delta-G solvation = -20200.823273 eV Core-core repulsion = 16980.695576 eV Total energy + Delta-G solvation = -3220.127696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44596 -39.69777 -37.29814 -35.88990 -33.59494 -31.66195 -31.21402 -30.58792 -27.81685 -25.73903 -24.05487 -23.14873 -22.27755 -21.32545 -19.87075 -18.83774 -17.39009 -16.54684 -16.36858 -16.27320 -16.16373 -15.64335 -15.21460 -14.59272 -14.42746 -14.17103 -13.99171 -13.44926 -13.15042 -12.64625 -12.53719 -12.33692 -12.25992 -11.67429 -11.53936 -11.28531 -11.16354 -10.98895 -10.88243 -10.68763 -10.63972 -10.59002 -10.07727 -9.96188 -9.82341 -9.62952 -9.45251 -9.17251 -8.39341 -6.02868 -4.07733 2.80856 2.93049 3.29889 3.37164 3.40603 3.45292 3.59464 4.20565 4.39145 4.42834 4.50204 4.54920 4.70068 4.87206 4.99864 5.13132 5.16296 5.29350 5.30929 5.32656 5.35978 5.37893 5.47648 5.52242 5.58940 5.63057 5.73387 5.86262 5.89977 5.97758 6.10869 6.19207 6.64274 6.92766 6.93106 7.65363 7.71880 7.96666 8.24270 8.40059 8.99612 9.56446 11.08190 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.041418 B = 0.002999 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.879964 B = 9334.711436 C = 9524.538602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.507 6.507 13 O -0.364 6.364 14 C 0.095 3.905 15 C -0.143 4.143 16 H 0.118 0.882 17 C -0.162 4.162 18 C -0.118 4.118 19 C -0.116 4.116 20 C 0.062 3.938 21 O -0.384 6.384 22 C 0.062 3.938 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -23.002 -1.182 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.393 6.393 13 O -0.282 6.282 14 C 0.021 3.979 15 C -0.161 4.161 16 H 0.136 0.864 17 C -0.199 4.199 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.015 4.015 21 O -0.302 6.302 22 C -0.015 4.015 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.152 -23.073 -1.262 23.477 hybrid contribution 0.448 1.139 0.242 1.248 sum 4.599 -21.933 -1.019 22.434 Atomic orbital electron populations 1.70002 1.06099 1.26663 1.50016 1.25028 0.94862 0.99364 0.95120 0.86484 0.80029 0.83537 0.77625 1.19637 1.20959 1.20959 1.21194 0.93114 0.90626 1.51681 0.92246 1.19024 0.93238 0.89313 0.98888 1.21766 1.00671 0.87632 1.04002 1.24788 0.87942 0.85670 0.71591 1.90631 1.15918 1.87718 1.45062 1.86549 1.42054 1.14854 1.84783 1.22405 0.92314 0.81006 1.02132 1.22309 1.01251 0.89138 1.03410 0.86447 1.23201 1.02873 1.02648 0.91164 1.21525 0.95056 0.94891 1.00369 1.21811 0.99355 0.98209 0.95933 1.22606 0.81380 1.01956 0.95573 1.87859 1.18233 1.44467 1.79685 1.22626 0.96977 0.90183 0.91672 1.21870 0.92839 1.03327 0.98081 0.92892 0.95586 0.95601 0.88943 0.88964 0.91233 0.91375 0.88262 0.88357 0.90525 0.90421 0.88803 0.92889 0.88572 0.92850 0.90314 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 10 C -0.10 -2.12 5.75 -27.89 -0.16 -2.28 16 11 C 0.46 9.06 7.96 36.01 0.29 9.35 16 12 O -0.51 -11.57 15.73 -18.75 -0.29 -11.87 16 13 O -0.36 -6.07 10.22 -39.26 -0.40 -6.47 16 14 C 0.10 1.30 4.34 37.16 0.16 1.46 16 15 C -0.14 -1.51 5.76 -90.73 -0.52 -2.03 16 16 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.16 -1.45 9.65 -26.85 -0.26 -1.71 16 18 C -0.12 -1.06 2.03 -154.55 -0.31 -1.37 16 19 C -0.12 -0.89 5.92 -26.43 -0.16 -1.04 16 20 C 0.06 0.51 6.85 37.33 0.26 0.77 16 21 O -0.38 -4.01 10.69 -35.23 -0.38 -4.39 16 22 C 0.06 0.59 6.85 37.33 0.26 0.84 16 23 C -0.12 -1.12 5.51 -26.43 -0.15 -1.26 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.07 0.95 7.72 -51.93 -0.40 0.55 16 30 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.53 7.85 -51.93 -0.41 0.12 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.74 6.57 -51.93 -0.34 0.40 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -32.34 331.48 -8.05 -40.39 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.56 Total: -2.73 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.13 Total: -10.05 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.07 Total: -22.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.34 -8.05 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813075575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.181 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds