Wall clock time and date at job start Mon Mar 30 2020 07:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99541 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99903 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.47231 * 180.02562 * 14 13 11 16 16 H 1.09005 * 115.55288 * 29.28944 * 15 14 13 17 17 C 1.53056 * 117.50671 * 243.53471 * 15 14 13 18 18 C 1.52706 * 59.93223 * 252.53293 * 17 15 14 19 19 C 1.53246 * 117.88783 * 107.78334 * 18 17 15 20 20 C 1.53329 * 108.47983 * 196.28116 * 19 18 17 21 21 O 1.42874 * 109.31617 * 306.00835 * 20 19 18 22 22 C 1.42871 * 114.51782 * 64.37227 * 21 20 19 23 23 C 1.53255 * 117.87976 * 252.22335 * 18 17 15 24 24 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 29 29 H 1.08995 * 109.47220 * 299.99917 * 14 13 11 30 30 H 1.09006 * 109.47532 * 60.00248 * 14 13 11 31 31 H 1.09006 * 117.50581 * 359.97438 * 17 15 14 32 32 H 1.08991 * 117.50778 * 145.06074 * 17 15 14 33 33 H 1.09005 * 109.63198 * 315.97174 * 19 18 17 34 34 H 1.09001 * 109.63693 * 76.57589 * 19 18 17 35 35 H 1.09007 * 109.49354 * 186.05896 * 20 19 18 36 36 H 1.09005 * 109.50166 * 65.96697 * 20 19 18 37 37 H 1.09000 * 109.49552 * 175.67473 * 22 21 20 38 38 H 1.09006 * 109.49491 * 55.58187 * 22 21 20 39 39 H 1.08999 * 109.63468 * 283.41552 * 23 18 17 40 40 H 1.08992 * 109.63637 * 44.02299 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2831 -4.9671 0.0011 13 8 2.1624 -6.1297 0.0018 14 6 1.3715 -7.3474 0.0018 15 6 2.3035 -8.5609 0.0032 16 1 3.2697 -8.4111 0.4850 17 6 2.2552 -9.4907 -1.2116 18 6 1.6628 -9.9422 0.1215 19 6 0.1366 -10.0154 0.2395 20 6 -0.2332 -10.0831 1.7260 21 8 0.4707 -11.1646 2.3393 22 6 1.8914 -11.0147 2.3546 23 6 2.4170 -11.0152 0.9142 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8904 27 1 2.8716 -3.6044 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.7424 -7.3720 0.8915 30 1 0.7431 -7.3726 -0.8885 31 1 1.5592 -9.2380 -2.0116 32 1 3.1898 -9.9527 -1.5294 33 1 -0.3084 -9.1269 -0.2085 34 1 -0.2278 -10.9076 -0.2697 35 1 -1.3066 -10.2438 1.8269 36 1 0.0423 -9.1473 2.2125 37 1 2.3386 -11.8421 2.9054 38 1 2.1526 -10.0726 2.8368 39 1 2.2461 -11.9923 0.4623 40 1 3.4833 -10.7895 0.9133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813075578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:49 Heat of formation + Delta-G solvation = -131.544774 kcal Electronic energy + Delta-G solvation = -20201.058540 eV Core-core repulsion = 16980.931988 eV Total energy + Delta-G solvation = -3220.126551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44590 -39.69806 -37.29734 -35.89018 -33.59363 -31.66057 -31.21355 -30.58793 -27.81668 -25.73719 -24.05338 -23.14834 -22.27589 -21.32543 -19.87047 -18.83757 -17.38971 -16.54580 -16.36795 -16.27278 -16.16363 -15.64161 -15.21369 -14.59369 -14.42870 -14.17056 -13.99190 -13.44864 -13.14987 -12.64474 -12.53584 -12.33638 -12.25721 -11.67423 -11.53915 -11.28647 -11.16500 -10.97310 -10.88195 -10.69084 -10.65105 -10.59222 -10.07111 -9.96331 -9.82302 -9.62731 -9.45090 -9.18690 -8.38889 -6.02669 -4.07582 2.80913 2.93045 3.30853 3.36989 3.39745 3.45238 3.59499 4.20575 4.39150 4.42899 4.50252 4.54936 4.70112 4.87211 4.99864 5.13103 5.16292 5.29354 5.30921 5.32782 5.35973 5.37898 5.47639 5.52217 5.58971 5.63068 5.73382 5.86282 5.89965 5.97752 6.10914 6.19252 6.64319 6.92807 6.93094 7.65184 7.72005 7.96791 8.24375 8.40124 8.99522 9.56496 11.08381 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.041390 B = 0.002999 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.330026 B = 9333.420685 C = 9522.915793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.507 6.507 13 O -0.364 6.364 14 C 0.095 3.905 15 C -0.143 4.143 16 H 0.118 0.882 17 C -0.162 4.162 18 C -0.118 4.118 19 C -0.124 4.124 20 C 0.062 3.938 21 O -0.384 6.384 22 C 0.062 3.938 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -22.988 1.193 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.393 6.393 13 O -0.282 6.282 14 C 0.021 3.979 15 C -0.161 4.161 16 H 0.136 0.864 17 C -0.199 4.199 18 C -0.119 4.119 19 C -0.161 4.161 20 C -0.015 4.015 21 O -0.302 6.302 22 C -0.015 4.015 23 C -0.153 4.153 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.133 -23.056 1.279 23.459 hybrid contribution 0.461 1.134 -0.254 1.251 sum 4.594 -21.922 1.025 22.422 Atomic orbital electron populations 1.69991 1.06104 1.26772 1.49914 1.25027 0.94863 0.99351 0.95108 0.86535 0.79769 0.83204 0.78133 1.20601 1.21176 1.19776 1.21158 0.93076 0.90642 1.51826 0.92300 1.19018 0.93230 0.89292 0.98882 1.21767 1.00671 0.87633 1.03999 1.24787 0.87945 0.85668 0.71593 1.90631 1.15918 1.87718 1.45065 1.86545 1.42059 1.14853 1.84777 1.22405 0.92313 0.81006 1.02133 1.22308 1.01253 0.89127 1.03412 0.86447 1.23202 1.02869 1.02639 0.91168 1.21529 0.95058 0.94915 1.00361 1.21872 0.92840 1.03327 0.98075 1.22628 0.96980 0.90198 0.91655 1.87861 1.18229 1.44541 1.79611 1.22608 0.81383 1.01954 0.95575 1.21812 0.99355 0.98216 0.95923 0.92837 0.95611 0.95585 0.88965 0.88946 0.91232 0.91374 0.88357 0.88259 0.90302 0.90312 0.88573 0.92846 0.88803 0.92887 0.90419 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.87 4.26 -27.89 -0.12 0.75 16 10 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 11 C 0.46 9.07 7.96 36.01 0.29 9.35 16 12 O -0.51 -11.58 15.73 -18.75 -0.29 -11.87 16 13 O -0.36 -6.07 10.22 -39.23 -0.40 -6.47 16 14 C 0.10 1.30 4.34 37.16 0.16 1.46 16 15 C -0.14 -1.51 5.76 -90.73 -0.52 -2.03 16 16 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.16 -1.45 9.65 -26.85 -0.26 -1.71 16 18 C -0.12 -1.06 2.03 -154.54 -0.31 -1.38 16 19 C -0.12 -1.12 5.51 -26.43 -0.15 -1.26 16 20 C 0.06 0.59 6.84 37.33 0.26 0.84 16 21 O -0.38 -4.01 10.69 -35.23 -0.38 -4.39 16 22 C 0.06 0.51 6.84 37.33 0.26 0.77 16 23 C -0.12 -0.89 5.92 -26.43 -0.16 -1.04 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 30 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 31 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.74 6.58 -51.93 -0.34 0.40 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.53 7.84 -51.93 -0.41 0.12 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -32.32 331.48 -8.05 -40.37 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.56 Total: -2.70 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.13 Total: -10.06 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.07 Total: -22.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.32 -8.05 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813075578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.170 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds