Wall clock time and date at job start Mon Mar 30 2020 07:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99541 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99903 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.47231 * 180.02562 * 14 13 11 16 16 H 1.09005 * 115.55288 * 29.28944 * 15 14 13 17 17 C 1.53056 * 117.50671 * 243.53471 * 15 14 13 18 18 C 1.52706 * 59.93223 * 252.53293 * 17 15 14 19 19 C 1.53246 * 117.88783 * 107.78334 * 18 17 15 20 20 C 1.53329 * 108.47983 * 196.28116 * 19 18 17 21 21 O 1.42874 * 109.31617 * 306.00835 * 20 19 18 22 22 C 1.42871 * 114.51782 * 64.37227 * 21 20 19 23 23 C 1.53255 * 117.87976 * 252.22335 * 18 17 15 24 24 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 29 29 H 1.08995 * 109.47220 * 299.99917 * 14 13 11 30 30 H 1.09006 * 109.47532 * 60.00248 * 14 13 11 31 31 H 1.09006 * 117.50581 * 359.97438 * 17 15 14 32 32 H 1.08991 * 117.50778 * 145.06074 * 17 15 14 33 33 H 1.09005 * 109.63198 * 315.97174 * 19 18 17 34 34 H 1.09001 * 109.63693 * 76.57589 * 19 18 17 35 35 H 1.09007 * 109.49354 * 186.05896 * 20 19 18 36 36 H 1.09005 * 109.50166 * 65.96697 * 20 19 18 37 37 H 1.09000 * 109.49552 * 175.67473 * 22 21 20 38 38 H 1.09006 * 109.49491 * 55.58187 * 22 21 20 39 39 H 1.08999 * 109.63468 * 283.41552 * 23 18 17 40 40 H 1.08992 * 109.63637 * 44.02299 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2831 -4.9671 0.0011 13 8 2.1624 -6.1297 0.0018 14 6 1.3715 -7.3474 0.0018 15 6 2.3035 -8.5609 0.0032 16 1 3.2697 -8.4111 0.4850 17 6 2.2552 -9.4907 -1.2116 18 6 1.6628 -9.9422 0.1215 19 6 0.1366 -10.0154 0.2395 20 6 -0.2332 -10.0831 1.7260 21 8 0.4707 -11.1646 2.3393 22 6 1.8914 -11.0147 2.3546 23 6 2.4170 -11.0152 0.9142 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8904 27 1 2.8716 -3.6044 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.7424 -7.3720 0.8915 30 1 0.7431 -7.3726 -0.8885 31 1 1.5592 -9.2380 -2.0116 32 1 3.1898 -9.9527 -1.5294 33 1 -0.3084 -9.1269 -0.2085 34 1 -0.2278 -10.9076 -0.2697 35 1 -1.3066 -10.2438 1.8269 36 1 0.0423 -9.1473 2.2125 37 1 2.3386 -11.8421 2.9054 38 1 2.1526 -10.0726 2.8368 39 1 2.2461 -11.9923 0.4623 40 1 3.4833 -10.7895 0.9133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813075578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:48 Heat of formation + Delta-G solvation = -150.120308 kcal Electronic energy + Delta-G solvation = -20201.864035 eV Core-core repulsion = 16980.931988 eV Total energy + Delta-G solvation = -3220.932047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63090 -40.80548 -38.24227 -37.24631 -35.65989 -33.19346 -32.31427 -31.42434 -29.06891 -27.55207 -24.77044 -24.19769 -23.76908 -22.23187 -21.51869 -19.66167 -19.06630 -18.22504 -17.71425 -17.19812 -17.04248 -16.98518 -16.48482 -16.00449 -15.61339 -15.37291 -14.91933 -14.43678 -14.32236 -14.10787 -13.96149 -13.66524 -13.28405 -13.19482 -12.83849 -12.52508 -12.42088 -12.30242 -12.19381 -12.01371 -11.79169 -11.75784 -11.60615 -11.51886 -11.35835 -11.22190 -10.66801 -10.58394 -10.24510 -8.20724 -6.34621 1.20674 1.42958 1.45592 1.56114 1.62720 2.42498 2.63062 2.91021 3.13136 3.40684 3.63188 3.65316 3.82940 4.01847 4.03287 4.07343 4.11659 4.29245 4.34072 4.43344 4.44550 4.49626 4.58916 4.65717 4.72400 4.74595 4.85825 4.88610 4.95919 5.07047 5.13328 5.19476 5.22759 5.37831 5.46702 5.53839 5.79670 6.12272 6.23174 6.76901 6.85118 7.35716 8.91990 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.041390 B = 0.002999 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.330026 B = 9333.420685 C = 9522.915793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.038 3.962 10 C -0.094 4.094 11 C 0.465 3.535 12 O -0.545 6.545 13 O -0.354 6.354 14 C 0.092 3.908 15 C -0.155 4.155 16 H 0.123 0.877 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.124 4.124 20 C 0.060 3.940 21 O -0.400 6.400 22 C 0.055 3.945 23 C -0.111 4.111 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -23.831 0.987 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.001 3.999 10 C -0.131 4.131 11 C 0.310 3.690 12 O -0.435 6.435 13 O -0.271 6.271 14 C 0.019 3.981 15 C -0.173 4.173 16 H 0.141 0.859 17 C -0.189 4.189 18 C -0.112 4.112 19 C -0.162 4.162 20 C -0.017 4.017 21 O -0.319 6.319 22 C -0.022 4.022 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.589 -23.933 1.072 24.846 hybrid contribution -0.328 1.294 -0.180 1.347 sum 6.261 -22.639 0.892 23.505 Atomic orbital electron populations 1.70158 1.08248 1.27955 1.51202 1.26112 0.95742 1.03900 0.94486 0.85301 0.78671 0.77627 0.78544 1.19696 1.21168 1.17926 1.21647 0.94130 0.91268 1.51196 0.90402 1.18800 0.93688 0.91986 0.95442 1.21524 0.99342 0.85994 1.06280 1.24540 0.87176 0.86560 0.70737 1.90625 1.17522 1.88355 1.46996 1.86506 1.41825 1.14864 1.83927 1.22660 0.93012 0.80656 1.01793 1.22243 1.01047 0.88377 1.05603 0.85858 1.23304 1.03621 1.01253 0.90711 1.21625 0.94986 0.94000 1.00606 1.21870 0.93187 1.03331 0.97770 1.22661 0.97550 0.89653 0.91807 1.87839 1.19471 1.44770 1.79815 1.22797 0.80447 1.02547 0.96376 1.21827 0.99959 0.97951 0.95086 0.92737 0.99204 0.99196 0.86595 0.86550 0.91814 0.91690 0.88499 0.86366 0.91096 0.89468 0.87778 0.93903 0.86988 0.93376 0.89615 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.07 4.26 29.85 0.13 2.20 16 10 C -0.09 -3.81 5.75 29.85 0.17 -3.64 16 11 C 0.46 18.53 7.96 71.24 0.57 19.09 16 12 O -0.55 -25.77 15.73 21.96 0.35 -25.42 16 13 O -0.35 -11.50 10.22 -51.33 -0.52 -12.02 16 14 C 0.09 2.48 4.34 71.98 0.31 2.79 16 15 C -0.15 -3.01 5.76 -10.86 -0.06 -3.08 16 16 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 17 C -0.15 -2.37 9.65 30.52 0.29 -2.07 16 18 C -0.11 -1.81 2.03 -52.20 -0.11 -1.91 16 19 C -0.12 -2.14 5.51 30.79 0.17 -1.97 16 20 C 0.06 1.11 6.84 72.09 0.49 1.60 16 21 O -0.40 -7.95 10.69 -148.98 -1.59 -9.54 16 22 C 0.05 0.81 6.84 72.09 0.49 1.31 16 23 C -0.11 -1.42 5.92 30.79 0.18 -1.24 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 26 H -0.01 -0.63 8.10 -2.38 -0.02 -0.65 16 27 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 28 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 29 H 0.06 1.78 7.71 -2.39 -0.02 1.76 16 30 H 0.06 1.78 7.49 -2.38 -0.02 1.76 16 31 H 0.10 1.56 8.03 -2.38 -0.02 1.54 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.32 6.58 -2.38 -0.02 1.31 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.04 0.86 7.84 -2.38 -0.02 0.85 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 Total: -1.00 -70.81 331.48 4.88 -65.93 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.01 Total: 10.33 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 3.34 Total: -16.94 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.00 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -1.77 Total: -46.98 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.81 4.88 -65.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813075578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.193 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds