Wall clock time and date at job start Mon Mar 30 2020 07:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 108.85496 * 2 1 4 4 O 1.45206 * 109.46730 * 59.99788 * 3 2 1 5 5 C 1.34236 * 116.99691 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99459 * 179.72734 * 5 4 3 8 8 C 1.53003 * 109.46699 * 180.27822 * 7 5 4 9 9 C 1.50703 * 109.46849 * 180.02562 * 8 7 5 10 10 H 1.07991 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99726 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00083 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47243 * 89.99761 * 13 11 9 15 15 H 1.48497 * 109.47328 * 209.99983 * 13 11 9 16 16 H 1.48503 * 109.47187 * 330.00087 * 13 11 9 17 17 C 1.54066 * 108.87948 * 118.56241 * 2 1 3 18 18 C 1.54000 * 112.85390 * 78.85888 * 17 2 1 19 19 C 1.50471 * 112.55151 * 318.44646 * 18 17 2 20 20 C 1.54249 * 108.52939 * 94.06774 * 19 18 17 21 21 C 1.45542 * 112.39889 * 280.02284 * 20 19 18 22 22 C 1.50476 * 108.87663 * 241.44092 * 2 1 3 23 23 H 1.09000 * 109.46901 * 46.03586 * 1 2 3 24 24 H 1.09000 * 109.47123 * 166.03521 * 1 2 3 25 25 H 1.08995 * 109.47113 * 286.03474 * 1 2 3 26 26 H 1.09000 * 109.47357 * 300.00145 * 3 2 1 27 27 H 1.08995 * 109.47237 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47211 * 300.27424 * 7 5 4 29 29 H 1.09000 * 109.47271 * 60.27879 * 7 5 4 30 30 H 1.08996 * 109.46964 * 299.99753 * 8 7 5 31 31 H 1.09000 * 109.47213 * 60.00021 * 8 7 5 32 32 H 0.97005 * 120.00388 * 179.97438 * 12 11 9 33 33 H 1.08998 * 108.81674 * 199.82588 * 17 2 1 34 34 H 1.08998 * 108.80862 * 318.10369 * 17 2 1 35 35 H 1.08995 * 108.91397 * 197.60818 * 18 17 2 36 36 H 1.09008 * 108.70979 * 79.14373 * 18 17 2 37 37 H 1.08997 * 109.62994 * 334.35888 * 19 18 17 38 38 H 1.08995 * 109.62764 * 213.77740 * 19 18 17 39 39 H 1.08999 * 108.89894 * 159.26944 * 20 19 18 40 40 H 1.08996 * 108.89253 * 40.77221 * 20 19 18 41 41 H 1.08993 * 108.89704 * 301.18472 * 21 20 19 42 42 H 1.09000 * 108.89530 * 182.68768 * 21 20 19 43 43 H 1.09005 * 109.62857 * 93.18983 * 22 2 1 44 44 H 1.08997 * 109.62978 * 213.76465 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4479 0.0000 4 8 1.5330 2.1271 1.1856 5 6 1.8803 3.4147 1.3382 6 8 2.5716 3.9565 0.5084 7 6 1.4023 4.1864 2.5411 8 6 1.9299 5.6208 2.4693 9 6 1.4525 6.3924 3.6725 10 1 0.8343 5.9084 4.4140 11 6 1.8050 7.7165 3.8267 12 7 1.3879 8.3900 4.8765 13 14 2.8748 8.5537 2.5445 14 1 2.0117 9.1626 1.5008 15 1 3.6886 9.6126 3.1937 16 1 3.7747 7.5511 1.9196 17 6 2.0285 -0.6970 1.2804 18 6 1.9626 -2.2329 1.1896 19 6 0.6982 -2.7185 0.5342 20 6 0.9740 -2.9261 -0.9692 21 6 0.9370 -1.6782 -1.7173 22 6 2.0168 -0.6807 -1.2506 23 1 -0.3633 0.7134 -0.7397 24 1 -0.3633 -0.9973 -0.2480 25 1 -0.3633 0.2838 0.9876 26 1 1.6556 1.9578 -0.8900 27 1 3.1143 1.4596 0.0005 28 1 0.3126 4.2004 2.5543 29 1 1.7707 3.7089 3.4490 30 1 3.0197 5.6069 2.4560 31 1 1.5616 6.0984 1.5613 32 1 1.6362 9.3214 4.9852 33 1 3.0606 -0.3985 1.4640 34 1 1.4155 -0.3696 2.1201 35 1 2.0207 -2.6490 2.1953 36 1 2.8172 -2.5861 0.6124 37 1 -0.0894 -1.9761 0.6627 38 1 0.3920 -3.6629 0.9840 39 1 0.2231 -3.6037 -1.3756 40 1 1.9577 -3.3800 -1.0882 41 1 -0.0441 -1.2205 -1.5920 42 1 1.0907 -1.8957 -2.7743 43 1 2.1894 0.0629 -2.0287 44 1 2.9429 -1.2155 -1.0396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813080411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:10 Heat of formation + Delta-G solvation = -98.357398 kcal Electronic energy + Delta-G solvation = -21146.587627 eV Core-core repulsion = 18063.733283 eV Total energy + Delta-G solvation = -3082.854344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72840 -39.63565 -36.28673 -33.72926 -33.58467 -32.62587 -31.39661 -28.21763 -27.45712 -25.94062 -25.13678 -22.81987 -21.64334 -20.31855 -19.74284 -18.36488 -17.50925 -16.72093 -16.45110 -16.17424 -15.66257 -15.09551 -14.64196 -14.37020 -14.13042 -13.64718 -13.28258 -13.18940 -12.86357 -12.73185 -12.58848 -12.36770 -12.10974 -11.99443 -11.47502 -11.44814 -11.06988 -11.00985 -10.75785 -10.55946 -10.50243 -10.42353 -10.30078 -10.23525 -10.13463 -9.90691 -9.82498 -9.64966 -9.25151 -8.55350 -6.06914 -4.06613 2.74492 3.08550 3.34538 3.41436 3.50896 4.33361 4.40823 4.46635 4.48546 4.79307 4.81894 4.86720 5.01692 5.05875 5.12229 5.27900 5.29539 5.36958 5.45051 5.51263 5.53699 5.58600 5.73710 5.75363 5.80131 5.84784 5.92668 5.97463 6.01587 6.03090 6.04007 6.06298 6.12695 6.14347 6.34884 6.36253 6.52479 6.85761 7.25107 7.32338 7.71654 8.26657 8.47911 8.95608 9.55028 11.05715 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044319 B = 0.003383 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.636414 B = 8274.550904 C = 8555.473848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C 0.072 3.928 4 O -0.358 6.358 5 C 0.456 3.544 6 O -0.514 6.514 7 C -0.096 4.096 8 C -0.002 4.002 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.107 4.107 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 -23.881 -11.591 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.053 4.053 3 C -0.002 4.002 4 O -0.276 6.276 5 C 0.300 3.700 6 O -0.402 6.402 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.564 4.564 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.178 4.178 20 C -0.153 4.153 21 C -0.174 4.174 22 C -0.144 4.144 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.863 -23.563 -11.775 26.355 hybrid contribution 0.765 0.653 -0.740 1.249 sum -0.098 -22.910 -12.515 26.106 Atomic orbital electron populations 1.22759 0.94354 1.02839 1.02647 1.20295 0.96876 0.92207 0.95895 1.23241 0.98852 0.91557 0.86526 1.86553 1.70333 1.26250 1.44447 1.24708 0.77116 0.79768 0.88424 1.90612 1.36036 1.69509 1.44051 1.21518 1.02859 0.96756 0.92176 1.19474 0.97136 0.89349 0.97989 1.21039 1.33009 0.95865 1.06521 0.90660 1.24957 0.95553 0.97231 0.95381 1.69903 1.45710 1.09920 1.28395 0.86803 0.81356 0.79514 0.81922 1.20170 1.21314 1.18607 1.21955 1.01423 0.94157 0.96749 1.21295 0.97941 0.95554 1.00524 1.21807 0.99327 1.01640 0.95046 1.20472 1.01646 0.97637 0.95590 1.20770 1.00966 0.96234 0.99381 1.21327 0.98899 0.98169 0.96042 0.92903 0.89032 0.91916 0.91621 0.91754 0.88438 0.88421 0.95658 0.96109 0.92607 0.92296 0.91139 0.92362 0.92441 0.89235 0.92336 0.92564 0.92475 0.89764 0.92496 0.91627 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 6.00 37.16 0.22 -1.39 16 2 C -0.05 -0.52 0.57 -155.21 -0.09 -0.61 16 3 C 0.07 0.95 3.88 37.16 0.14 1.09 16 4 O -0.36 -5.64 9.33 -39.27 -0.37 -6.00 16 5 C 0.46 8.64 7.96 36.00 0.29 8.92 16 6 O -0.51 -11.23 15.73 -18.75 -0.29 -11.52 16 7 C -0.10 -1.89 5.75 -27.88 -0.16 -2.05 16 8 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 9 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 10 H 0.08 2.23 7.99 -52.49 -0.42 1.82 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 13 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 17 C -0.11 -1.04 4.45 -25.65 -0.11 -1.15 16 18 C -0.12 -0.94 5.31 -27.47 -0.15 -1.08 16 19 C -0.14 -1.03 5.56 -27.34 -0.15 -1.18 16 20 C -0.12 -0.79 5.21 -29.59 -0.15 -0.94 16 21 C -0.14 -0.98 5.14 -29.60 -0.15 -1.13 16 22 C -0.11 -0.90 5.02 -27.34 -0.14 -1.04 16 23 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 24 H 0.09 0.71 2.67 -51.93 -0.14 0.58 16 25 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 26 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 27 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.03 0.65 7.15 -51.93 -0.37 0.27 16 31 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.06 0.62 7.97 -51.93 -0.41 0.20 16 34 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 6.63 -51.92 -0.34 0.11 16 37 H 0.09 0.68 4.25 -51.93 -0.22 0.46 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.39 7.47 -51.93 -0.39 0.00 16 41 H 0.08 0.60 4.83 -51.93 -0.25 0.35 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.56 7.65 -51.93 -0.40 0.16 16 44 H 0.07 0.57 6.97 -51.93 -0.36 0.20 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.60 328.41 -8.04 -39.63 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.46 Total: -3.72 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.97 Total: -14.03 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.66 Total: -17.52 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.60 -8.04 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813080411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.723 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds