Wall clock time and date at job start Mon Mar 30 2020 07:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 108.85496 * 2 1 4 4 O 1.45206 * 109.46730 * 59.99788 * 3 2 1 5 5 C 1.34236 * 116.99691 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99459 * 179.72734 * 5 4 3 8 8 C 1.53003 * 109.46699 * 180.27822 * 7 5 4 9 9 C 1.50703 * 109.46849 * 180.02562 * 8 7 5 10 10 H 1.07991 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99726 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00083 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47243 * 89.99761 * 13 11 9 15 15 H 1.48497 * 109.47328 * 209.99983 * 13 11 9 16 16 H 1.48503 * 109.47187 * 330.00087 * 13 11 9 17 17 C 1.54066 * 108.87948 * 118.56241 * 2 1 3 18 18 C 1.54000 * 112.85390 * 78.85888 * 17 2 1 19 19 C 1.50471 * 112.55151 * 318.44646 * 18 17 2 20 20 C 1.54249 * 108.52939 * 94.06774 * 19 18 17 21 21 C 1.45542 * 112.39889 * 280.02284 * 20 19 18 22 22 C 1.50476 * 108.87663 * 241.44092 * 2 1 3 23 23 H 1.09000 * 109.46901 * 46.03586 * 1 2 3 24 24 H 1.09000 * 109.47123 * 166.03521 * 1 2 3 25 25 H 1.08995 * 109.47113 * 286.03474 * 1 2 3 26 26 H 1.09000 * 109.47357 * 300.00145 * 3 2 1 27 27 H 1.08995 * 109.47237 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47211 * 300.27424 * 7 5 4 29 29 H 1.09000 * 109.47271 * 60.27879 * 7 5 4 30 30 H 1.08996 * 109.46964 * 299.99753 * 8 7 5 31 31 H 1.09000 * 109.47213 * 60.00021 * 8 7 5 32 32 H 0.97005 * 120.00388 * 179.97438 * 12 11 9 33 33 H 1.08998 * 108.81674 * 199.82588 * 17 2 1 34 34 H 1.08998 * 108.80862 * 318.10369 * 17 2 1 35 35 H 1.08995 * 108.91397 * 197.60818 * 18 17 2 36 36 H 1.09008 * 108.70979 * 79.14373 * 18 17 2 37 37 H 1.08997 * 109.62994 * 334.35888 * 19 18 17 38 38 H 1.08995 * 109.62764 * 213.77740 * 19 18 17 39 39 H 1.08999 * 108.89894 * 159.26944 * 20 19 18 40 40 H 1.08996 * 108.89253 * 40.77221 * 20 19 18 41 41 H 1.08993 * 108.89704 * 301.18472 * 21 20 19 42 42 H 1.09000 * 108.89530 * 182.68768 * 21 20 19 43 43 H 1.09005 * 109.62857 * 93.18983 * 22 2 1 44 44 H 1.08997 * 109.62978 * 213.76465 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0244 1.4479 0.0000 4 8 1.5330 2.1271 1.1856 5 6 1.8803 3.4147 1.3382 6 8 2.5716 3.9565 0.5084 7 6 1.4023 4.1864 2.5411 8 6 1.9299 5.6208 2.4693 9 6 1.4525 6.3924 3.6725 10 1 0.8343 5.9084 4.4140 11 6 1.8050 7.7165 3.8267 12 7 1.3879 8.3900 4.8765 13 14 2.8748 8.5537 2.5445 14 1 2.0117 9.1626 1.5008 15 1 3.6886 9.6126 3.1937 16 1 3.7747 7.5511 1.9196 17 6 2.0285 -0.6970 1.2804 18 6 1.9626 -2.2329 1.1896 19 6 0.6982 -2.7185 0.5342 20 6 0.9740 -2.9261 -0.9692 21 6 0.9370 -1.6782 -1.7173 22 6 2.0168 -0.6807 -1.2506 23 1 -0.3633 0.7134 -0.7397 24 1 -0.3633 -0.9973 -0.2480 25 1 -0.3633 0.2838 0.9876 26 1 1.6556 1.9578 -0.8900 27 1 3.1143 1.4596 0.0005 28 1 0.3126 4.2004 2.5543 29 1 1.7707 3.7089 3.4490 30 1 3.0197 5.6069 2.4560 31 1 1.5616 6.0984 1.5613 32 1 1.6362 9.3214 4.9852 33 1 3.0606 -0.3985 1.4640 34 1 1.4155 -0.3696 2.1201 35 1 2.0207 -2.6490 2.1953 36 1 2.8172 -2.5861 0.6124 37 1 -0.0894 -1.9761 0.6627 38 1 0.3920 -3.6629 0.9840 39 1 0.2231 -3.6037 -1.3756 40 1 1.9577 -3.3800 -1.0882 41 1 -0.0441 -1.2205 -1.5920 42 1 1.0907 -1.8957 -2.7743 43 1 2.1894 0.0629 -2.0287 44 1 2.9429 -1.2155 -1.0396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813080411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:09 Heat of formation + Delta-G solvation = -114.625362 kcal Electronic energy + Delta-G solvation = -21147.293059 eV Core-core repulsion = 18063.733283 eV Total energy + Delta-G solvation = -3083.559776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78282 -40.78336 -37.64892 -35.64249 -34.53561 -33.41529 -33.27498 -28.99872 -28.88803 -27.38772 -25.83065 -23.97375 -23.09835 -21.41096 -20.91112 -19.38977 -19.11755 -18.34804 -17.65460 -17.36723 -16.61710 -16.24319 -16.15840 -15.68344 -15.15392 -14.87352 -14.76067 -14.32848 -13.99068 -13.87062 -13.63303 -13.45084 -13.20220 -12.98303 -12.90691 -12.82121 -12.30725 -12.23987 -12.03939 -11.91807 -11.79026 -11.60442 -11.48231 -11.44569 -11.28794 -11.18040 -11.08800 -10.99232 -10.80127 -10.48849 -8.33098 -6.37305 1.21873 1.33194 1.35244 1.49086 1.73819 2.33425 3.02199 3.54957 3.62487 3.74550 3.94272 4.04535 4.12609 4.24093 4.27592 4.36441 4.37979 4.39823 4.44840 4.46877 4.53404 4.72551 4.82033 4.83735 4.87572 5.05013 5.07730 5.13700 5.18048 5.24845 5.26641 5.34699 5.35775 5.37736 5.40281 5.42749 5.43724 5.49804 5.58302 5.63317 5.74097 6.20234 6.68097 6.81649 7.27876 8.82513 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044319 B = 0.003383 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.636414 B = 8274.550904 C = 8555.473848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C 0.066 3.934 4 O -0.349 6.349 5 C 0.466 3.534 6 O -0.546 6.546 7 C -0.091 4.091 8 C 0.002 3.998 9 C -0.532 4.532 10 H 0.051 0.949 11 C 0.015 3.985 12 N -0.942 5.942 13 Si 0.939 3.061 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.259 1.259 17 C -0.105 4.105 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.134 4.134 22 C -0.106 4.106 23 H 0.049 0.951 24 H 0.112 0.888 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -25.579 -13.092 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.046 4.046 3 C -0.008 4.008 4 O -0.266 6.266 5 C 0.311 3.689 6 O -0.436 6.436 7 C -0.129 4.129 8 C -0.035 4.035 9 C -0.570 4.570 10 H 0.070 0.930 11 C -0.183 4.183 12 N -0.582 5.582 13 Si 0.763 3.237 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.184 1.184 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.178 4.178 20 C -0.152 4.152 21 C -0.170 4.170 22 C -0.144 4.144 23 H 0.068 0.932 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.786 -25.292 -13.275 28.575 hybrid contribution 0.702 1.098 -0.236 1.324 sum -0.085 -24.194 -13.510 27.711 Atomic orbital electron populations 1.22798 0.93818 1.04047 1.01874 1.20318 0.97268 0.90083 0.96886 1.23595 0.98830 0.93101 0.85238 1.86534 1.69782 1.24594 1.45642 1.24339 0.76380 0.80595 0.87538 1.90602 1.37540 1.70414 1.45043 1.21320 1.03706 0.94392 0.93464 1.19314 0.96459 0.91886 0.95861 1.21337 1.32224 0.96255 1.07152 0.93036 1.25804 0.97012 0.98158 0.97355 1.70017 1.47347 1.10542 1.30313 0.85819 0.79768 0.78585 0.79503 1.19220 1.20330 1.18351 1.21951 1.00513 0.95672 0.96173 1.21267 0.98741 0.93919 1.00979 1.21808 0.98582 1.01914 0.95523 1.20467 1.02167 0.97574 0.95039 1.20754 1.00303 0.95987 1.00004 1.21341 0.99588 0.98417 0.95039 0.93223 0.86984 0.93109 0.91749 0.92109 0.86906 0.86985 0.96579 0.96661 0.92253 0.93216 0.92349 0.92127 0.91965 0.89603 0.91435 0.91434 0.92298 0.89671 0.91541 0.91718 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 6.00 71.98 0.43 -2.53 16 2 C -0.05 -0.85 0.57 -52.64 -0.03 -0.88 16 3 C 0.07 1.68 3.88 71.98 0.28 1.96 16 4 O -0.35 -10.67 9.33 -51.48 -0.48 -11.15 16 5 C 0.47 17.29 7.96 71.23 0.57 17.86 16 6 O -0.55 -23.49 15.73 21.97 0.35 -23.15 16 7 C -0.09 -3.55 5.75 29.85 0.17 -3.38 16 8 C 0.00 0.12 3.33 29.85 0.10 0.22 16 9 C -0.53 -30.47 9.66 25.60 0.25 -30.23 16 10 H 0.05 3.12 7.99 -2.92 -0.02 3.09 16 11 C 0.01 0.87 5.47 84.66 0.46 1.33 16 12 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 13 Si 0.94 46.00 27.47 68.60 1.88 47.88 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 17 C -0.11 -1.97 4.45 31.29 0.14 -1.83 16 18 C -0.11 -1.60 5.31 30.11 0.16 -1.44 16 19 C -0.14 -1.71 5.56 30.20 0.17 -1.54 16 20 C -0.12 -1.23 5.21 28.74 0.15 -1.08 16 21 C -0.13 -1.57 5.14 28.74 0.15 -1.42 16 22 C -0.11 -1.59 5.02 30.20 0.15 -1.44 16 23 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 24 H 0.11 1.50 2.67 -2.39 -0.01 1.50 16 25 H 0.05 1.01 7.68 -2.39 -0.02 0.99 16 26 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 27 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 28 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 29 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.02 0.81 7.15 -2.39 -0.02 0.79 16 31 H 0.01 0.75 7.53 -2.39 -0.02 0.74 16 32 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 33 H 0.05 1.01 7.97 -2.39 -0.02 0.99 16 34 H 0.06 1.22 7.69 -2.39 -0.02 1.20 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.84 6.63 -2.38 -0.02 0.83 16 37 H 0.09 1.10 4.25 -2.39 -0.01 1.09 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.63 7.47 -2.39 -0.02 0.62 16 41 H 0.09 0.99 4.83 -2.39 -0.01 0.98 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.99 7.65 -2.38 -0.02 0.97 16 44 H 0.07 1.04 6.97 -2.39 -0.02 1.03 16 Total: -1.00 -66.94 328.41 6.10 -60.84 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.91 Total: 8.36 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 3.15 Total: -24.40 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.30 Total: -58.38 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.13 Total: -34.30 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -66.94 6.10 -60.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813080411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.789 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds