Wall clock time and date at job start Mon Mar 30 2020 07:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 C 1.50701 * 109.54430 * 60.00411 * 4 3 2 6 6 O 1.20817 * 120.00237 * 119.99970 * 5 4 3 7 7 O 1.34232 * 119.99405 * 299.99616 * 5 4 3 8 8 C 1.45204 * 116.99659 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47053 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47230 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99944 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31503 * 120.00310 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99752 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47217 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47254 * 120.00010 * 14 12 10 17 17 H 1.48496 * 109.47274 * 240.00356 * 14 12 10 18 18 C 1.53176 * 109.54175 * 299.82250 * 4 3 2 19 19 C 1.53286 * 109.06364 * 297.02778 * 18 4 3 20 20 O 1.42902 * 109.46105 * 302.44857 * 19 18 4 21 21 C 1.42905 * 114.09846 * 61.15972 * 20 19 18 22 22 C 1.53096 * 109.41103 * 298.83904 * 21 20 19 23 23 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 27 27 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 28 28 H 1.09005 * 109.46777 * 299.99515 * 8 7 5 29 29 H 1.08996 * 109.47097 * 59.99681 * 8 7 5 30 30 H 1.09002 * 109.46926 * 299.99732 * 9 8 7 31 31 H 1.08996 * 109.47658 * 59.99177 * 9 8 7 32 32 H 0.97007 * 120.00129 * 179.97438 * 13 12 10 33 33 H 1.08991 * 109.52594 * 57.02244 * 18 4 3 34 34 H 1.09002 * 109.51890 * 177.21039 * 18 4 3 35 35 H 1.08994 * 109.45476 * 182.44750 * 19 18 4 36 36 H 1.08998 * 109.46117 * 62.45156 * 19 18 4 37 37 H 1.08994 * 109.48313 * 178.85623 * 21 20 19 38 38 H 1.09004 * 109.49055 * 58.82657 * 21 20 19 39 39 H 1.09000 * 109.52340 * 297.69764 * 22 21 20 40 40 H 1.09004 * 109.57076 * 177.54509 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 6 4.0106 0.1907 1.0594 6 8 5.1953 0.4139 0.9801 7 8 3.5631 -1.0746 1.0387 8 6 4.5593 -2.1242 0.9194 9 6 3.8652 -3.4877 0.9123 10 6 4.8991 -4.5771 0.7878 11 1 5.9464 -4.3224 0.7202 12 6 4.5078 -5.8989 0.7604 13 7 3.2326 -6.2091 0.8433 14 14 5.7894 -7.2492 0.6054 15 1 7.1421 -6.6413 0.5289 16 1 5.7135 -8.1419 1.7897 17 1 5.5312 -8.0376 -0.6261 18 6 2.2525 1.2005 2.4917 19 6 1.3208 2.4084 2.6427 20 8 2.0914 3.6113 2.6076 21 6 2.8077 3.8100 1.3871 22 6 3.7989 2.6607 1.1859 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3588 2.1316 0.0896 27 1 2.6214 1.4025 -0.9314 28 1 5.1142 -1.9946 -0.0098 29 1 5.2466 -2.0704 1.7636 30 1 3.3100 -3.6176 1.8412 31 1 3.1780 -3.5412 0.0679 32 1 2.9573 -7.1390 0.8236 33 1 1.6635 0.2836 2.4731 34 1 2.9483 1.1706 3.3302 35 1 0.7925 2.3427 3.5937 36 1 0.5994 2.4148 1.8257 37 1 3.3504 4.7541 1.4336 38 1 2.1059 3.8349 0.5534 39 1 4.5259 2.6603 1.9980 40 1 4.3157 2.7866 0.2344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820475431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:50 Heat of formation + Delta-G solvation = -132.763783 kcal Electronic energy + Delta-G solvation = -21274.513214 eV Core-core repulsion = 18054.333803 eV Total energy + Delta-G solvation = -3220.179411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97636 -39.08430 -36.22545 -35.82113 -33.35845 -32.76547 -31.28392 -30.29254 -27.58233 -25.69750 -24.62992 -23.78493 -21.74964 -20.86471 -20.06946 -18.80415 -17.35657 -16.74565 -16.24619 -16.21976 -15.99865 -15.22766 -15.01883 -14.93052 -14.53730 -14.07150 -13.77110 -13.39110 -12.93485 -12.76117 -12.52486 -12.37593 -12.03134 -11.72723 -11.47400 -11.25282 -11.21618 -10.89121 -10.80825 -10.69169 -10.60853 -10.49441 -10.20633 -9.78256 -9.65295 -9.50094 -9.29093 -9.19948 -8.47480 -6.13329 -4.17560 2.34233 2.58550 3.07916 3.25547 3.33323 3.38373 3.70269 4.32221 4.36573 4.55282 4.64989 4.79318 4.96771 4.97752 5.06907 5.15491 5.23580 5.36381 5.43276 5.47982 5.48998 5.59344 5.68130 5.69835 5.90015 6.01264 6.04944 6.05812 6.08522 6.16348 6.60563 6.83493 6.90264 6.99024 7.00333 7.52317 7.58434 7.83724 8.16008 8.23929 8.88083 9.47201 10.98102 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.004247 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.642166 B = 6591.235341 C = 7039.933515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.087 4.087 4 C -0.046 4.046 5 C 0.466 3.534 6 O -0.515 6.515 7 O -0.348 6.348 8 C 0.071 3.929 9 C 0.026 3.974 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.144 4.144 19 C 0.063 3.937 20 O -0.383 6.383 21 C 0.061 3.939 22 C -0.136 4.136 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 18.142 0.244 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.124 4.124 4 C -0.047 4.047 5 C 0.309 3.691 6 O -0.404 6.404 7 O -0.264 6.264 8 C -0.002 4.002 9 C -0.011 4.011 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.301 6.301 21 C -0.015 4.015 22 C -0.174 4.174 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.154 0.846 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.466 18.133 0.374 18.943 hybrid contribution 0.879 -1.196 -0.357 1.527 sum -4.587 16.937 0.017 17.547 Atomic orbital electron populations 1.23782 0.95760 1.01480 1.02518 1.23365 0.96320 0.99049 0.98276 1.20915 0.97511 0.97212 0.96766 1.20546 0.94417 0.91845 0.97936 1.23328 0.88425 0.84768 0.72626 1.90616 1.18350 1.85679 1.45783 1.86563 1.42632 1.15268 1.81983 1.23665 0.89982 0.85814 1.00710 1.19159 0.96602 0.86583 0.98762 1.21019 0.93162 0.90641 1.51639 0.92258 1.24969 0.95478 0.98771 0.94855 1.69975 1.14698 1.18403 1.49722 0.86434 0.81589 0.81636 0.77775 1.19595 1.20806 1.20818 1.22284 0.99665 1.00671 0.95586 1.22647 0.92661 0.83428 1.02632 1.87933 1.63683 1.41117 1.37403 1.22643 0.93693 0.98074 0.87115 1.22142 0.98452 0.92319 1.04500 0.89344 0.88183 0.84601 0.90112 0.90336 0.92404 0.92407 0.95383 0.95433 0.92763 0.88711 0.90507 0.88385 0.92566 0.88449 0.92778 0.89854 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.15 -1.99 7.48 -36.03 -0.27 -2.26 16 3 C -0.09 -0.99 4.17 -27.88 -0.12 -1.10 16 4 C -0.05 -0.59 0.51 -155.47 -0.08 -0.67 16 5 C 0.47 8.05 6.51 36.01 0.23 8.29 16 6 O -0.52 -10.21 15.72 -18.74 -0.29 -10.50 16 7 O -0.35 -6.67 7.19 -39.26 -0.28 -6.96 16 8 C 0.07 1.55 5.40 37.16 0.20 1.76 16 9 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 10 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 14 Si 0.90 21.31 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.14 -1.71 4.68 -26.49 -0.12 -1.84 16 19 C 0.06 0.62 6.57 37.31 0.25 0.86 16 20 O -0.38 -4.23 10.77 -35.23 -0.38 -4.61 16 21 C 0.06 0.57 6.57 37.21 0.24 0.81 16 22 C -0.14 -1.55 4.23 -26.59 -0.11 -1.66 16 23 H 0.09 0.83 7.84 -52.49 -0.41 0.41 16 24 H 0.10 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.14 2.20 5.68 -52.49 -0.30 1.90 16 26 H 0.08 0.74 4.66 -51.93 -0.24 0.50 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.09 1.17 7.13 -51.93 -0.37 0.80 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.49 6.60 -51.93 -0.34 0.15 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.43 6.60 -51.93 -0.34 0.08 16 39 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -30.75 322.09 -6.50 -37.25 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.19 Total: -0.45 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.96 Total: -22.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.75 -6.50 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820475431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.511 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds