Wall clock time and date at job start Mon Mar 30 2020 07:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 C 1.50701 * 109.54430 * 60.00411 * 4 3 2 6 6 O 1.20817 * 120.00237 * 119.99970 * 5 4 3 7 7 O 1.34232 * 119.99405 * 299.99616 * 5 4 3 8 8 C 1.45204 * 116.99659 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47053 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47230 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99944 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31503 * 120.00310 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99752 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47217 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47254 * 120.00010 * 14 12 10 17 17 H 1.48496 * 109.47274 * 240.00356 * 14 12 10 18 18 C 1.53176 * 109.54175 * 299.82250 * 4 3 2 19 19 C 1.53286 * 109.06364 * 297.02778 * 18 4 3 20 20 O 1.42902 * 109.46105 * 302.44857 * 19 18 4 21 21 C 1.42905 * 114.09846 * 61.15972 * 20 19 18 22 22 C 1.53096 * 109.41103 * 298.83904 * 21 20 19 23 23 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 27 27 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 28 28 H 1.09005 * 109.46777 * 299.99515 * 8 7 5 29 29 H 1.08996 * 109.47097 * 59.99681 * 8 7 5 30 30 H 1.09002 * 109.46926 * 299.99732 * 9 8 7 31 31 H 1.08996 * 109.47658 * 59.99177 * 9 8 7 32 32 H 0.97007 * 120.00129 * 179.97438 * 13 12 10 33 33 H 1.08991 * 109.52594 * 57.02244 * 18 4 3 34 34 H 1.09002 * 109.51890 * 177.21039 * 18 4 3 35 35 H 1.08994 * 109.45476 * 182.44750 * 19 18 4 36 36 H 1.08998 * 109.46117 * 62.45156 * 19 18 4 37 37 H 1.08994 * 109.48313 * 178.85623 * 21 20 19 38 38 H 1.09004 * 109.49055 * 58.82657 * 21 20 19 39 39 H 1.09000 * 109.52340 * 297.69764 * 22 21 20 40 40 H 1.09004 * 109.57076 * 177.54509 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 6 4.0106 0.1907 1.0594 6 8 5.1953 0.4139 0.9801 7 8 3.5631 -1.0746 1.0387 8 6 4.5593 -2.1242 0.9194 9 6 3.8652 -3.4877 0.9123 10 6 4.8991 -4.5771 0.7878 11 1 5.9464 -4.3224 0.7202 12 6 4.5078 -5.8989 0.7604 13 7 3.2326 -6.2091 0.8433 14 14 5.7894 -7.2492 0.6054 15 1 7.1421 -6.6413 0.5289 16 1 5.7135 -8.1419 1.7897 17 1 5.5312 -8.0376 -0.6261 18 6 2.2525 1.2005 2.4917 19 6 1.3208 2.4084 2.6427 20 8 2.0914 3.6113 2.6076 21 6 2.8077 3.8100 1.3871 22 6 3.7989 2.6607 1.1859 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3588 2.1316 0.0896 27 1 2.6214 1.4025 -0.9314 28 1 5.1142 -1.9946 -0.0098 29 1 5.2466 -2.0704 1.7636 30 1 3.3100 -3.6176 1.8412 31 1 3.1780 -3.5412 0.0679 32 1 2.9573 -7.1390 0.8236 33 1 1.6635 0.2836 2.4731 34 1 2.9483 1.1706 3.3302 35 1 0.7925 2.3427 3.5937 36 1 0.5994 2.4148 1.8257 37 1 3.3504 4.7541 1.4336 38 1 2.1059 3.8349 0.5534 39 1 4.5259 2.6603 1.9980 40 1 4.3157 2.7866 0.2344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820475431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:49 Heat of formation + Delta-G solvation = -150.451665 kcal Electronic energy + Delta-G solvation = -21275.280218 eV Core-core repulsion = 18054.333803 eV Total energy + Delta-G solvation = -3220.946416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19885 -40.23935 -37.78806 -36.80049 -35.45833 -33.74282 -32.38834 -32.04198 -28.56505 -27.29903 -26.02806 -24.64373 -23.33324 -22.47528 -21.09368 -19.96707 -18.87561 -18.15785 -17.85616 -17.63325 -16.93847 -16.60218 -16.22013 -16.14789 -15.77686 -15.19443 -14.97897 -14.76334 -14.40501 -14.23875 -13.87387 -13.34889 -13.25648 -13.13351 -12.90056 -12.68688 -12.62180 -12.51082 -12.35343 -11.99393 -11.88426 -11.61438 -11.53069 -11.40934 -11.38231 -11.18959 -10.64408 -10.46387 -10.16310 -8.29827 -6.43038 1.08061 1.38678 1.39227 1.45864 1.52614 1.69941 2.37542 2.96819 3.04645 3.33237 3.53592 3.62373 3.86899 3.96007 4.13218 4.17464 4.21373 4.23010 4.29589 4.47884 4.53517 4.64098 4.65280 4.70288 4.74116 4.81440 4.84506 5.05062 5.08146 5.14718 5.19296 5.26429 5.43160 5.51497 5.71023 5.85113 5.97363 6.03975 6.24746 6.67074 6.71724 7.26955 8.82756 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.004247 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.642166 B = 6591.235341 C = 7039.933515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 C -0.078 4.078 4 C -0.041 4.041 5 C 0.460 3.540 6 O -0.543 6.543 7 O -0.349 6.349 8 C 0.086 3.914 9 C 0.036 3.964 10 C -0.552 4.552 11 H 0.062 0.938 12 C 0.009 3.991 13 N -0.925 5.925 14 Si 0.972 3.028 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.143 4.143 19 C 0.067 3.933 20 O -0.396 6.396 21 C 0.064 3.936 22 C -0.134 4.134 23 H 0.122 0.878 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 19.654 -0.106 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C -0.115 4.115 4 C -0.042 4.042 5 C 0.305 3.695 6 O -0.434 6.434 7 O -0.265 6.265 8 C 0.013 3.987 9 C -0.001 4.001 10 C -0.590 4.590 11 H 0.080 0.920 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.795 3.205 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.181 4.181 19 C -0.009 4.009 20 O -0.315 6.315 21 C -0.012 4.012 22 C -0.172 4.172 23 H 0.140 0.860 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.139 19.665 0.026 20.601 hybrid contribution 1.032 -1.646 -0.241 1.958 sum -5.107 18.018 -0.215 18.729 Atomic orbital electron populations 1.23957 0.95066 1.02698 0.99781 1.23177 0.96996 0.98382 1.00909 1.20917 0.97430 0.97272 0.95846 1.20730 0.93911 0.90212 0.99383 1.24451 0.89163 0.84715 0.71196 1.90594 1.19865 1.85813 1.47100 1.86616 1.41592 1.15937 1.82340 1.23156 0.89807 0.85396 1.00384 1.18930 0.95934 0.88656 0.96603 1.21395 0.93661 0.91758 1.52147 0.92001 1.25921 0.97713 1.01321 0.94063 1.70088 1.16756 1.19322 1.50195 0.85301 0.78839 0.78207 0.78117 1.18805 1.19966 1.19931 1.22296 0.99655 1.01801 0.94381 1.22723 0.92088 0.81776 1.04324 1.87932 1.63893 1.41227 1.38436 1.22789 0.93586 0.97546 0.87327 1.22173 0.98724 0.92293 1.04002 0.86039 0.88952 0.88585 0.86728 0.90225 0.92563 0.92789 0.97602 0.97439 0.92299 0.89583 0.91963 0.86959 0.90558 0.86571 0.90441 0.91769 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.18 -4.49 7.48 25.64 0.19 -4.30 16 3 C -0.08 -1.61 4.17 29.85 0.12 -1.49 16 4 C -0.04 -1.03 0.51 -52.81 -0.03 -1.05 16 5 C 0.46 16.32 6.51 71.24 0.46 16.78 16 6 O -0.54 -22.10 15.72 21.99 0.35 -21.75 16 7 O -0.35 -14.01 7.19 -51.44 -0.37 -14.38 16 8 C 0.09 3.95 5.40 71.98 0.39 4.34 16 9 C 0.04 1.94 5.35 29.85 0.16 2.10 16 10 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 11 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 12 C 0.01 0.51 5.46 84.66 0.46 0.98 16 13 N -0.92 -55.22 13.29 21.45 0.28 -54.94 16 14 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 15 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 C -0.14 -3.28 4.68 30.75 0.14 -3.14 16 19 C 0.07 1.12 6.57 72.08 0.47 1.60 16 20 O -0.40 -7.54 10.77 -148.98 -1.60 -9.15 16 21 C 0.06 0.97 6.57 72.01 0.47 1.44 16 22 C -0.13 -2.86 4.23 30.69 0.13 -2.73 16 23 H 0.12 1.74 7.84 -2.91 -0.02 1.71 16 24 H 0.09 2.05 8.06 -2.91 -0.02 2.03 16 25 H 0.10 3.26 5.68 -2.91 -0.02 3.25 16 26 H 0.11 1.61 4.66 -2.39 -0.01 1.60 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.58 8.13 -2.38 -0.02 2.56 16 29 H 0.05 2.49 8.13 -2.39 -0.02 2.47 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 33 H 0.09 2.12 7.13 -2.39 -0.02 2.10 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 0.99 6.60 -2.39 -0.02 0.97 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.08 0.85 6.60 -2.39 -0.02 0.84 16 39 H 0.06 1.61 8.03 -2.39 -0.02 1.59 16 40 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -67.95 322.09 5.88 -62.07 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.01 Total: 11.88 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.19 Total: -19.57 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.63 Total: -45.27 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.95 5.88 -62.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820475431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.387 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds