Wall clock time and date at job start Mon Mar 30 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 H 1.09003 * 109.46746 * 305.86379 * 3 2 1 5 5 C 1.50699 * 109.47306 * 185.86381 * 3 2 1 6 6 H 1.08000 * 119.99968 * 236.35982 * 5 3 2 7 7 C 1.37871 * 120.00345 * 56.35332 * 5 3 2 8 8 N 1.31518 * 119.99679 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46935 * 90.00268 * 9 7 5 11 11 H 1.48495 * 109.47099 * 210.00436 * 9 7 5 12 12 H 1.48505 * 109.46814 * 330.00380 * 9 7 5 13 13 C 1.52997 * 109.47287 * 65.85996 * 3 2 1 14 14 C 1.50704 * 110.43797 * 286.59973 * 13 3 2 15 15 O 1.20827 * 120.00330 * 161.72024 * 14 13 3 16 16 O 1.34233 * 119.99520 * 341.71400 * 14 13 3 17 17 C 1.54810 * 110.60213 * 163.97356 * 13 3 2 18 18 C 1.54999 * 102.09147 * 262.14827 * 17 13 3 19 19 O 1.44374 * 103.49093 * 322.97667 * 18 17 13 20 20 C 1.43744 * 106.97645 * 40.06004 * 19 18 17 21 21 H 1.09000 * 109.88030 * 92.91426 * 20 19 18 22 22 C 1.53010 * 110.00352 * 213.99132 * 20 19 18 23 23 C 1.52994 * 117.49845 * 10.15392 * 22 20 19 24 24 C 1.53004 * 117.49719 * 301.49176 * 22 20 19 25 25 H 1.09000 * 109.46840 * 175.44256 * 1 2 3 26 26 H 1.09002 * 109.47269 * 295.43719 * 1 2 3 27 27 H 1.08997 * 109.47354 * 55.44270 * 1 2 3 28 28 H 1.08997 * 109.47337 * 239.99382 * 2 1 3 29 29 H 1.09007 * 109.47186 * 119.99990 * 2 1 3 30 30 H 0.97001 * 119.99916 * 179.97438 * 8 7 5 31 31 H 0.96698 * 116.99779 * 179.97438 * 16 14 13 32 32 H 1.08998 * 110.90590 * 20.34644 * 17 13 3 33 33 H 1.09006 * 110.90620 * 143.91997 * 17 13 3 34 34 H 1.08995 * 110.61566 * 81.47524 * 18 17 13 35 35 H 1.09003 * 110.61709 * 204.31778 * 18 17 13 36 36 H 1.08995 * 115.54715 * 155.82340 * 22 20 19 37 37 H 1.09000 * 117.50082 * 359.97438 * 23 22 20 38 38 H 1.08997 * 117.49716 * 145.01873 * 23 22 20 39 39 H 1.08992 * 117.49406 * 214.97667 * 24 22 20 40 40 H 1.08993 * 117.49815 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1452 6 1 4.1533 1.9372 0.5951 7 6 4.1294 0.8189 -1.2228 8 7 3.3825 0.2198 -2.1245 9 14 5.9888 0.8213 -1.4024 10 1 6.5537 -0.3694 -0.7182 11 1 6.3470 0.7810 -2.8429 12 1 6.5436 2.0545 -0.7886 13 6 1.6538 2.1200 1.3163 14 6 0.1780 2.4245 1.3383 15 8 -0.3773 2.6474 2.3880 16 8 -0.5195 2.4480 0.1917 17 6 2.4773 3.4142 1.5249 18 6 3.6107 2.9300 2.4647 19 8 2.9483 1.9851 3.3323 20 6 2.0388 1.2302 2.5141 21 1 2.5259 0.3218 2.1596 22 6 0.7877 0.8697 3.3178 23 6 0.6075 1.5383 4.6821 24 6 0.9813 0.0562 4.5991 25 1 -0.3633 -1.0244 -0.0817 26 1 -0.3634 0.4414 0.9280 27 1 -0.3634 0.5829 -0.8463 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7971 -0.2205 -2.8829 31 1 -1.4634 2.6476 0.2562 32 1 2.8830 3.7737 0.5793 33 1 1.8751 4.1851 2.0060 34 1 4.3993 2.4396 1.8940 35 1 4.0156 3.7634 3.0389 36 1 -0.1093 0.6765 2.7296 37 1 1.3804 2.2347 5.0073 38 1 -0.4081 1.7846 4.9916 39 1 0.2113 -0.6719 4.8540 40 1 1.9998 -0.2225 4.8692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:30 Heat of formation + Delta-G solvation = -89.436210 kcal Electronic energy + Delta-G solvation = -23169.863850 eV Core-core repulsion = 19951.563264 eV Total energy + Delta-G solvation = -3218.300587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98647 -38.49070 -36.23582 -35.42158 -34.94624 -32.03235 -30.98883 -28.48509 -26.90776 -24.64121 -23.00116 -22.32966 -21.82268 -20.49254 -20.00129 -19.06016 -17.26749 -16.57214 -16.05808 -15.56464 -15.40566 -15.03741 -14.68670 -14.14801 -13.71208 -13.30960 -12.90317 -12.74226 -12.53115 -12.01127 -11.61476 -11.50271 -11.30074 -11.15275 -10.97835 -10.92297 -10.76544 -10.65812 -10.60716 -10.35524 -10.23323 -10.03168 -9.59857 -9.44978 -9.30485 -9.15871 -8.87076 -8.46794 -8.28408 -6.05050 -4.14497 2.77244 3.25383 3.33099 3.34283 3.67099 4.35266 4.36765 4.45992 5.09122 5.20003 5.25457 5.46128 5.59942 5.60691 5.72213 5.89399 5.96455 6.02586 6.11229 6.12597 6.22437 6.25314 6.30675 6.46357 6.50374 6.55004 6.57957 6.64859 6.71731 6.79226 6.98972 7.04052 7.21564 7.34444 7.53158 7.70496 7.89545 8.09023 8.34938 8.51211 8.87905 9.51099 10.97901 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.008862 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.796528 B = 3158.692238 C = 3629.691813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.066 3.934 4 H 0.045 0.955 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C -0.068 4.068 14 C 0.495 3.505 15 O -0.519 6.519 16 O -0.503 6.503 17 C -0.126 4.126 18 C 0.045 3.955 19 O -0.376 6.376 20 C 0.130 3.870 21 H 0.100 0.900 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.194 4.194 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.391 0.609 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 2.702 6.006 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.047 3.953 4 H 0.063 0.937 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.069 4.069 14 C 0.340 3.660 15 O -0.409 6.409 16 O -0.313 6.313 17 C -0.164 4.164 18 C -0.031 4.031 19 O -0.296 6.296 20 C 0.073 3.927 21 H 0.117 0.883 22 C -0.158 4.158 23 C -0.181 4.181 24 C -0.231 4.231 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.247 0.753 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.046 2.546 6.310 7.916 hybrid contribution 0.161 0.096 -0.388 0.430 sum -3.885 2.642 5.923 7.560 Atomic orbital electron populations 1.22167 0.99542 0.98848 0.99810 1.21833 0.91608 1.00058 1.03261 1.18802 0.96133 0.92112 0.88216 0.93736 1.21585 0.91189 1.35222 1.08658 0.90852 1.24927 0.97758 0.95136 0.95755 1.69833 1.34615 1.35602 1.12131 0.86677 0.86018 0.78536 0.77313 1.20671 1.21293 1.19829 1.22048 0.85938 0.97476 1.01452 1.23397 0.90759 0.71430 0.80427 1.90690 1.71939 1.46000 1.32225 1.84899 1.26510 1.82760 1.37127 1.23025 0.96569 0.95194 1.01590 1.23858 0.95714 0.91880 0.91656 1.88728 1.56079 1.51782 1.32966 1.22259 0.88704 0.94589 0.87166 0.88269 1.22593 0.98225 1.04384 0.90636 1.22591 1.01391 0.94367 0.99755 1.23033 1.02003 0.94727 1.03295 0.95311 0.95461 0.92122 0.87455 0.94564 0.92939 0.75255 0.88222 0.92182 0.89362 0.90273 0.87456 0.88536 0.90087 0.89866 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.19 37.16 0.30 -2.52 16 2 C -0.13 -2.89 4.92 -26.73 -0.13 -3.02 16 3 C 0.07 1.48 1.30 -91.77 -0.12 1.36 16 4 H 0.04 1.11 7.40 -51.93 -0.38 0.73 16 5 C -0.53 -12.78 7.10 -34.44 -0.24 -13.03 16 6 H 0.07 1.70 3.55 -52.49 -0.19 1.51 16 7 C 0.07 1.67 5.28 -17.82 -0.09 1.58 16 8 N -0.88 -23.40 11.02 55.43 0.61 -22.79 16 9 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C -0.07 -1.34 0.54 -154.13 -0.08 -1.42 16 14 C 0.50 9.20 3.94 36.01 0.14 9.34 16 15 O -0.52 -10.03 13.53 -18.75 -0.25 -10.28 16 16 O -0.50 -8.28 8.94 -39.26 -0.35 -8.63 16 17 C -0.13 -2.32 5.69 -24.72 -0.14 -2.46 16 18 C 0.04 0.80 7.25 38.21 0.28 1.07 16 19 O -0.38 -7.30 9.59 -35.23 -0.34 -7.64 16 20 C 0.13 2.56 2.58 -26.15 -0.07 2.49 16 21 H 0.10 2.13 5.50 -51.93 -0.29 1.84 16 22 C -0.14 -2.58 3.68 -90.62 -0.33 -2.91 16 23 C -0.14 -2.47 8.87 -26.69 -0.24 -2.70 16 24 C -0.19 -3.14 10.19 -26.69 -0.27 -3.42 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.50 3.55 -51.93 -0.18 0.31 16 27 H 0.06 1.16 6.88 -51.93 -0.36 0.81 16 28 H 0.11 2.70 5.63 -51.93 -0.29 2.41 16 29 H 0.04 0.80 5.73 -51.92 -0.30 0.50 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.39 4.49 9.10 45.56 0.41 4.90 16 32 H 0.10 1.86 7.26 -51.93 -0.38 1.48 16 33 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 34 H 0.09 1.67 5.31 -51.93 -0.28 1.39 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.11 2.05 4.65 -51.93 -0.24 1.80 16 37 H 0.10 1.71 7.10 -51.93 -0.37 1.34 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 292.04 15.07 4.40 4.40 Total: -1.00 -27.32 292.04 -6.45 -33.76 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.49 Total: 11.96 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.00 Total: -15.63 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.61 Total: -22.79 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.94 Total: -26.55 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.32 -6.45 -33.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.674 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds