Wall clock time and date at job start Mon Mar 30 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 H 1.09003 * 109.46746 * 305.86379 * 3 2 1 5 5 C 1.50699 * 109.47306 * 185.86381 * 3 2 1 6 6 H 1.08000 * 119.99968 * 236.35982 * 5 3 2 7 7 C 1.37871 * 120.00345 * 56.35332 * 5 3 2 8 8 N 1.31518 * 119.99679 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46935 * 90.00268 * 9 7 5 11 11 H 1.48495 * 109.47099 * 210.00436 * 9 7 5 12 12 H 1.48505 * 109.46814 * 330.00380 * 9 7 5 13 13 C 1.52997 * 109.47287 * 65.85996 * 3 2 1 14 14 C 1.50704 * 110.43797 * 286.59973 * 13 3 2 15 15 O 1.20827 * 120.00330 * 161.72024 * 14 13 3 16 16 O 1.34233 * 119.99520 * 341.71400 * 14 13 3 17 17 C 1.54810 * 110.60213 * 163.97356 * 13 3 2 18 18 C 1.54999 * 102.09147 * 262.14827 * 17 13 3 19 19 O 1.44374 * 103.49093 * 322.97667 * 18 17 13 20 20 C 1.43744 * 106.97645 * 40.06004 * 19 18 17 21 21 H 1.09000 * 109.88030 * 92.91426 * 20 19 18 22 22 C 1.53010 * 110.00352 * 213.99132 * 20 19 18 23 23 C 1.52994 * 117.49845 * 10.15392 * 22 20 19 24 24 C 1.53004 * 117.49719 * 301.49176 * 22 20 19 25 25 H 1.09000 * 109.46840 * 175.44256 * 1 2 3 26 26 H 1.09002 * 109.47269 * 295.43719 * 1 2 3 27 27 H 1.08997 * 109.47354 * 55.44270 * 1 2 3 28 28 H 1.08997 * 109.47337 * 239.99382 * 2 1 3 29 29 H 1.09007 * 109.47186 * 119.99990 * 2 1 3 30 30 H 0.97001 * 119.99916 * 179.97438 * 8 7 5 31 31 H 0.96698 * 116.99779 * 179.97438 * 16 14 13 32 32 H 1.08998 * 110.90590 * 20.34644 * 17 13 3 33 33 H 1.09006 * 110.90620 * 143.91997 * 17 13 3 34 34 H 1.08995 * 110.61566 * 81.47524 * 18 17 13 35 35 H 1.09003 * 110.61709 * 204.31778 * 18 17 13 36 36 H 1.08995 * 115.54715 * 155.82340 * 22 20 19 37 37 H 1.09000 * 117.50082 * 359.97438 * 23 22 20 38 38 H 1.08997 * 117.49716 * 145.01873 * 23 22 20 39 39 H 1.08992 * 117.49406 * 214.97667 * 24 22 20 40 40 H 1.08993 * 117.49815 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1452 6 1 4.1533 1.9372 0.5951 7 6 4.1294 0.8189 -1.2228 8 7 3.3825 0.2198 -2.1245 9 14 5.9888 0.8213 -1.4024 10 1 6.5537 -0.3694 -0.7182 11 1 6.3470 0.7810 -2.8429 12 1 6.5436 2.0545 -0.7886 13 6 1.6538 2.1200 1.3163 14 6 0.1780 2.4245 1.3383 15 8 -0.3773 2.6474 2.3880 16 8 -0.5195 2.4480 0.1917 17 6 2.4773 3.4142 1.5249 18 6 3.6107 2.9300 2.4647 19 8 2.9483 1.9851 3.3323 20 6 2.0388 1.2302 2.5141 21 1 2.5259 0.3218 2.1596 22 6 0.7877 0.8697 3.3178 23 6 0.6075 1.5383 4.6821 24 6 0.9813 0.0562 4.5991 25 1 -0.3633 -1.0244 -0.0817 26 1 -0.3634 0.4414 0.9280 27 1 -0.3634 0.5829 -0.8463 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7971 -0.2205 -2.8829 31 1 -1.4634 2.6476 0.2562 32 1 2.8830 3.7737 0.5793 33 1 1.8751 4.1851 2.0060 34 1 4.3993 2.4396 1.8940 35 1 4.0156 3.7634 3.0389 36 1 -0.1093 0.6765 2.7296 37 1 1.3804 2.2347 5.0073 38 1 -0.4081 1.7846 4.9916 39 1 0.2113 -0.6719 4.8540 40 1 1.9998 -0.2225 4.8692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:30 Heat of formation + Delta-G solvation = -105.170523 kcal Electronic energy + Delta-G solvation = -23170.546141 eV Core-core repulsion = 19951.563264 eV Total energy + Delta-G solvation = -3218.982878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48227 -39.94409 -37.68847 -36.84265 -36.55567 -33.87448 -32.57221 -29.97935 -28.69796 -26.18396 -24.74102 -23.77086 -23.13090 -22.11867 -21.48968 -20.61434 -18.78682 -18.20060 -17.62283 -17.16388 -16.92912 -16.54541 -16.29873 -15.76414 -15.12060 -14.82944 -14.57462 -14.32709 -14.03670 -13.67064 -13.13496 -13.10793 -12.82416 -12.78708 -12.64940 -12.49287 -12.29989 -12.21398 -12.11758 -11.87080 -11.75401 -11.66178 -11.30894 -10.98260 -10.84764 -10.80521 -10.43040 -10.29127 -9.99392 -7.98088 -6.11276 1.31152 1.45781 1.49486 1.55424 2.29991 2.50094 2.95241 3.04169 3.28336 3.65317 3.75914 4.05688 4.20202 4.22967 4.24609 4.46326 4.49209 4.55029 4.57187 4.65403 4.71931 4.85020 4.88058 4.89643 5.00172 5.04116 5.12642 5.18865 5.30945 5.34880 5.42202 5.49980 5.60226 5.72348 5.80919 6.02413 6.04050 6.23464 6.47394 6.98050 7.19806 7.56342 9.03881 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.008862 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.796528 B = 3158.692238 C = 3629.691813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.072 3.928 4 H 0.016 0.984 5 C -0.532 4.532 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.262 1.262 13 C -0.071 4.071 14 C 0.501 3.499 15 O -0.525 6.525 16 O -0.506 6.506 17 C -0.125 4.125 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.135 3.865 21 H 0.076 0.924 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.180 4.180 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.257 0.743 31 H 0.414 0.586 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 3.330 7.417 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.053 3.947 4 H 0.034 0.966 5 C -0.570 4.570 6 H 0.101 0.899 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.765 3.235 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.186 1.186 13 C -0.073 4.073 14 C 0.345 3.655 15 O -0.415 6.415 16 O -0.318 6.318 17 C -0.162 4.162 18 C -0.031 4.031 19 O -0.301 6.301 20 C 0.077 3.923 21 H 0.093 0.907 22 C -0.175 4.175 23 C -0.175 4.175 24 C -0.216 4.216 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.274 0.726 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.392 3.189 7.726 9.442 hybrid contribution 0.237 -0.088 -0.837 0.874 sum -4.155 3.100 6.889 8.622 Atomic orbital electron populations 1.22036 0.97190 0.99751 1.00292 1.21686 0.93735 0.99544 1.01451 1.18606 0.95095 0.92108 0.88853 0.96573 1.22015 0.92496 1.34114 1.08333 0.89860 1.25586 1.01083 0.95379 0.95934 1.69979 1.35826 1.36765 1.12635 0.85849 0.82145 0.78677 0.76788 1.20935 1.21822 1.18611 1.21932 0.87443 0.97990 0.99911 1.23005 0.90302 0.71459 0.80702 1.90686 1.71934 1.46417 1.32455 1.84839 1.28433 1.82406 1.36164 1.23025 0.96755 0.94874 1.01565 1.23922 0.94990 0.92370 0.91826 1.88720 1.56140 1.52028 1.33174 1.22062 0.89189 0.93637 0.87413 0.90676 1.22492 0.97304 1.06478 0.91190 1.22575 1.01674 0.94819 0.98426 1.23112 1.02682 0.94776 1.01071 0.94134 0.94306 0.92285 0.90546 0.94980 0.93398 0.72550 0.88896 0.90932 0.90758 0.86992 0.88081 0.89180 0.89232 0.87785 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.19 71.98 0.59 -4.54 16 2 C -0.13 -5.69 4.92 30.59 0.15 -5.54 16 3 C 0.07 3.25 1.30 -11.54 -0.02 3.24 16 4 H 0.02 0.82 7.40 -2.39 -0.02 0.81 16 5 C -0.53 -25.89 7.10 25.60 0.18 -25.71 16 6 H 0.08 3.83 3.55 -2.91 -0.01 3.82 16 7 C 0.02 0.96 5.28 84.65 0.45 1.41 16 8 N -0.91 -49.50 11.02 21.45 0.24 -49.26 16 9 Si 0.94 40.97 29.54 68.60 2.03 42.99 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 C -0.07 -2.76 0.54 -51.94 -0.03 -2.79 16 14 C 0.50 17.86 3.94 71.24 0.28 18.14 16 15 O -0.52 -19.14 13.53 21.96 0.30 -18.84 16 16 O -0.51 -15.90 8.94 -51.44 -0.46 -16.36 16 17 C -0.12 -4.41 5.69 31.90 0.18 -4.23 16 18 C 0.04 1.50 7.25 72.67 0.53 2.03 16 19 O -0.38 -14.20 9.59 -148.98 -1.43 -15.63 16 20 C 0.13 5.17 2.58 30.97 0.08 5.25 16 21 H 0.08 3.24 5.50 -2.39 -0.01 3.22 16 22 C -0.16 -5.47 3.68 -10.79 -0.04 -5.51 16 23 C -0.14 -4.40 8.87 30.62 0.27 -4.12 16 24 C -0.18 -5.40 10.19 30.62 0.31 -5.09 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.37 3.55 -2.39 -0.01 1.36 16 27 H 0.06 2.23 6.88 -2.39 -0.02 2.21 16 28 H 0.08 3.96 5.63 -2.39 -0.01 3.94 16 29 H 0.03 1.44 5.73 -2.38 -0.01 1.42 16 30 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 31 H 0.41 8.58 9.10 -74.06 -0.67 7.91 16 32 H 0.09 3.40 7.26 -2.39 -0.02 3.38 16 33 H 0.07 2.38 7.86 -2.38 -0.02 2.36 16 34 H 0.07 2.72 5.31 -2.39 -0.01 2.71 16 35 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.10 3.66 4.65 -2.39 -0.01 3.65 16 37 H 0.09 2.99 7.10 -2.39 -0.02 2.98 16 38 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -57.61 292.04 4.02 -53.60 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.41 Total: 30.98 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 2.94 Total: -27.47 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.24 Total: -49.26 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -1.59 Total: -50.83 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -57.61 4.02 -53.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.575 kcal (2) G-P(sol) polarization free energy of solvation -57.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds