Wall clock time and date at job start Mon Mar 30 2020 07:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 H 1.09008 * 109.46975 * 307.03442 * 3 2 1 5 5 C 1.50704 * 109.47239 * 187.03633 * 3 2 1 6 6 H 1.07996 * 119.99585 * 240.78909 * 5 3 2 7 7 C 1.37880 * 119.99933 * 60.51116 * 5 3 2 8 8 N 1.31515 * 120.00196 * 0.27828 * 7 5 3 9 9 Si 1.86800 * 119.99738 * 180.27660 * 7 5 3 10 10 H 1.48500 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46931 * 120.00411 * 9 7 5 12 12 H 1.48500 * 109.46909 * 240.00209 * 9 7 5 13 13 C 1.52990 * 109.47039 * 67.03358 * 3 2 1 14 14 C 1.50700 * 110.43778 * 291.93750 * 13 3 2 15 15 O 1.20832 * 119.99718 * 127.45627 * 14 13 3 16 16 O 1.34225 * 120.00092 * 307.45402 * 14 13 3 17 17 C 1.54812 * 110.48756 * 54.62823 * 13 3 2 18 18 C 1.55004 * 102.09232 * 97.79813 * 17 13 3 19 19 O 1.44375 * 103.49201 * 37.02155 * 18 17 13 20 20 C 1.43751 * 106.97568 * 319.93987 * 19 18 17 21 21 H 1.08994 * 110.00639 * 267.01459 * 20 19 18 22 22 C 1.53010 * 109.87566 * 145.93760 * 20 19 18 23 23 C 1.52997 * 117.49710 * 136.50477 * 22 20 19 24 24 C 1.52994 * 117.49786 * 67.88236 * 22 20 19 25 25 H 1.09003 * 109.47268 * 166.03498 * 1 2 3 26 26 H 1.08994 * 109.47185 * 286.03785 * 1 2 3 27 27 H 1.09003 * 109.47021 * 46.04317 * 1 2 3 28 28 H 1.09006 * 109.47417 * 239.99840 * 2 1 3 29 29 H 1.09003 * 109.47234 * 120.00050 * 2 1 3 30 30 H 0.96997 * 119.99822 * 179.97438 * 8 7 5 31 31 H 0.96700 * 117.00078 * 185.02608 * 16 14 13 32 32 H 1.09000 * 110.90753 * 215.98595 * 17 13 3 33 33 H 1.08995 * 110.91074 * 339.59640 * 17 13 3 34 34 H 1.09005 * 110.61264 * 278.52109 * 18 17 13 35 35 H 1.08992 * 110.61807 * 155.52687 * 18 17 13 36 36 H 1.08994 * 115.54803 * 282.21091 * 22 20 19 37 37 H 1.09004 * 117.49694 * 359.97438 * 23 22 20 38 38 H 1.08995 * 117.50399 * 145.01968 * 23 22 20 39 39 H 1.08996 * 117.49897 * 214.98129 * 24 22 20 40 40 H 1.09005 * 117.49932 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5775 1.9914 -0.8204 5 6 3.5369 1.4460 -0.1741 6 1 4.1686 1.8701 0.5924 7 6 4.1003 0.9028 -1.3092 8 7 3.3310 0.3865 -2.2426 9 14 5.9562 0.9003 -1.5214 10 1 6.5905 1.5360 -0.3387 11 1 6.4378 -0.4985 -1.6500 12 1 6.3156 1.6620 -2.7444 13 6 1.6794 2.1109 1.3281 14 6 0.1877 2.2967 1.4357 15 8 -0.4028 1.8919 2.4090 16 8 -0.4848 2.9120 0.4504 17 6 2.2113 1.2748 2.5175 18 6 3.5343 2.0054 2.8619 19 8 3.2161 3.3973 2.6479 20 6 2.4028 3.4647 1.4645 21 1 3.0300 3.6395 0.5904 22 6 1.3767 4.5914 1.6019 23 6 1.1557 5.4974 0.3891 24 6 1.9026 6.0281 1.6144 25 1 -0.3634 -0.9973 -0.2480 26 1 -0.3633 0.2839 0.9876 27 1 -0.3633 0.7133 -0.7398 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7274 0.0047 -3.0414 31 1 -1.4266 3.0748 0.5968 32 1 1.5181 1.3091 3.3579 33 1 2.4029 0.2455 2.2146 34 1 4.3339 1.6871 2.1928 35 1 3.8101 1.8302 3.9017 36 1 0.5124 4.3663 2.2266 37 1 1.7416 5.2911 -0.5067 38 1 0.1457 5.8686 0.2154 39 1 1.3839 6.7483 2.2470 40 1 2.9795 6.1706 1.5251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:34 Heat of formation + Delta-G solvation = -109.893519 kcal Electronic energy + Delta-G solvation = -22995.260811 eV Core-core repulsion = 19776.073129 eV Total energy + Delta-G solvation = -3219.187682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84175 -38.47267 -36.45113 -35.47837 -35.08596 -32.07520 -30.58145 -28.97277 -26.92317 -24.28809 -23.08841 -22.29835 -21.88005 -21.37085 -19.56209 -18.75434 -17.31899 -16.79223 -16.25373 -15.83310 -15.27022 -14.81553 -14.36438 -14.24597 -14.02390 -13.31032 -13.06770 -12.78513 -12.44867 -12.07777 -11.70665 -11.43956 -11.23440 -11.19566 -11.09226 -11.05205 -10.94090 -10.87178 -10.68042 -10.40544 -10.11113 -9.99882 -9.90045 -9.54126 -9.47384 -9.17995 -9.08495 -8.55577 -8.39329 -6.09736 -4.17192 2.83230 3.23508 3.33077 3.35771 3.64809 3.97616 4.35347 4.62570 4.96627 5.02140 5.20525 5.29077 5.42702 5.66652 5.73756 5.81726 5.91745 5.94869 5.99922 6.10616 6.16988 6.21158 6.24763 6.33482 6.38681 6.46071 6.48073 6.58747 6.71885 6.76746 6.90468 7.04106 7.11180 7.27865 7.50465 7.64718 7.83784 7.98013 8.27309 8.49059 8.85129 9.48114 10.95656 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.009516 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.840186 B = 2941.809222 C = 3477.139310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.125 4.125 3 C 0.069 3.931 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.068 4.068 14 C 0.516 3.484 15 O -0.541 6.541 16 O -0.504 6.504 17 C -0.138 4.138 18 C 0.046 3.954 19 O -0.378 6.378 20 C 0.128 3.872 21 H 0.104 0.896 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.174 4.174 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.393 0.607 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 5.204 4.861 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.069 4.069 14 C 0.362 3.638 15 O -0.432 6.432 16 O -0.314 6.314 17 C -0.175 4.175 18 C -0.030 4.030 19 O -0.297 6.297 20 C 0.070 3.930 21 H 0.121 0.879 22 C -0.178 4.178 23 C -0.192 4.192 24 C -0.211 4.211 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.491 5.102 4.988 7.944 hybrid contribution 0.097 -0.292 -0.179 0.356 sum -3.394 4.810 4.810 7.602 Atomic orbital electron populations 1.22187 0.99694 1.00273 1.00270 1.21790 0.91521 1.00166 1.02757 1.18811 0.96638 0.91842 0.87683 0.93647 1.21350 0.90882 1.39382 1.04434 0.91286 1.24919 0.97765 0.95029 0.95791 1.69896 1.34546 1.39047 1.08590 0.86613 0.85885 0.77759 0.78294 1.19575 1.21040 1.21007 1.22088 0.85526 0.97281 1.02000 1.23213 0.91253 0.71030 0.78314 1.90621 1.70546 1.48946 1.33108 1.84715 1.27449 1.72762 1.46446 1.23223 0.96873 1.00949 0.96477 1.23737 0.97516 0.81001 1.00750 1.88764 1.69942 1.25516 1.45490 1.22371 0.90380 0.90726 0.89492 0.87871 1.22432 1.00303 0.92138 1.02925 1.22852 1.01359 1.02277 0.92705 1.22846 1.00710 0.95963 1.01564 0.94472 0.93976 0.92951 0.88356 0.94169 0.92919 0.75054 0.90537 0.88526 0.89954 0.90215 0.88985 0.88084 0.89022 0.89421 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.52 37.16 0.32 -3.05 16 2 C -0.12 -2.80 5.07 -26.73 -0.14 -2.94 16 3 C 0.07 1.56 1.30 -91.78 -0.12 1.44 16 4 H 0.05 1.15 7.72 -51.92 -0.40 0.75 16 5 C -0.52 -12.72 6.72 -34.44 -0.23 -12.95 16 6 H 0.07 1.65 4.08 -52.49 -0.21 1.43 16 7 C 0.07 1.71 5.28 -17.82 -0.09 1.61 16 8 N -0.88 -23.46 11.34 55.43 0.63 -22.83 16 9 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C -0.07 -1.36 0.56 -154.13 -0.09 -1.44 16 14 C 0.52 9.81 1.93 36.01 0.07 9.88 16 15 O -0.54 -11.10 15.13 -18.75 -0.28 -11.38 16 16 O -0.50 -8.20 10.73 -39.24 -0.42 -8.62 16 17 C -0.14 -2.65 5.60 -24.72 -0.14 -2.79 16 18 C 0.05 0.84 7.17 38.22 0.27 1.11 16 19 O -0.38 -7.44 11.19 -35.23 -0.39 -7.83 16 20 C 0.13 2.49 2.66 -26.15 -0.07 2.42 16 21 H 0.10 2.19 6.34 -51.93 -0.33 1.86 16 22 C -0.16 -2.70 3.74 -90.62 -0.34 -3.04 16 23 C -0.15 -2.27 9.75 -26.73 -0.26 -2.53 16 24 C -0.17 -2.53 10.25 -26.74 -0.27 -2.80 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.84 5.09 -51.93 -0.26 0.58 16 27 H 0.05 1.05 7.32 -51.93 -0.38 0.67 16 28 H 0.10 2.48 5.97 -51.93 -0.31 2.17 16 29 H 0.04 0.88 5.66 -51.93 -0.29 0.58 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.39 4.50 9.11 45.56 0.41 4.92 16 32 H 0.08 1.47 6.84 -51.93 -0.36 1.12 16 33 H 0.10 1.88 5.48 -51.93 -0.28 1.60 16 34 H 0.08 1.58 5.77 -51.93 -0.30 1.28 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.61 6.59 -51.93 -0.34 1.26 16 37 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -28.02 300.86 -6.77 -34.80 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -4.73 Total: 11.49 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.09 Total: -15.09 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.63 Total: -22.83 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.10 Total: -27.84 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.02 -6.77 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.098 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds