Wall clock time and date at job start Mon Mar 30 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 H 1.09008 * 109.46975 * 307.03442 * 3 2 1 5 5 C 1.50704 * 109.47239 * 187.03633 * 3 2 1 6 6 H 1.07996 * 119.99585 * 240.78909 * 5 3 2 7 7 C 1.37880 * 119.99933 * 60.51116 * 5 3 2 8 8 N 1.31515 * 120.00196 * 0.27828 * 7 5 3 9 9 Si 1.86800 * 119.99738 * 180.27660 * 7 5 3 10 10 H 1.48500 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46931 * 120.00411 * 9 7 5 12 12 H 1.48500 * 109.46909 * 240.00209 * 9 7 5 13 13 C 1.52990 * 109.47039 * 67.03358 * 3 2 1 14 14 C 1.50700 * 110.43778 * 291.93750 * 13 3 2 15 15 O 1.20832 * 119.99718 * 127.45627 * 14 13 3 16 16 O 1.34225 * 120.00092 * 307.45402 * 14 13 3 17 17 C 1.54812 * 110.48756 * 54.62823 * 13 3 2 18 18 C 1.55004 * 102.09232 * 97.79813 * 17 13 3 19 19 O 1.44375 * 103.49201 * 37.02155 * 18 17 13 20 20 C 1.43751 * 106.97568 * 319.93987 * 19 18 17 21 21 H 1.08994 * 110.00639 * 267.01459 * 20 19 18 22 22 C 1.53010 * 109.87566 * 145.93760 * 20 19 18 23 23 C 1.52997 * 117.49710 * 136.50477 * 22 20 19 24 24 C 1.52994 * 117.49786 * 67.88236 * 22 20 19 25 25 H 1.09003 * 109.47268 * 166.03498 * 1 2 3 26 26 H 1.08994 * 109.47185 * 286.03785 * 1 2 3 27 27 H 1.09003 * 109.47021 * 46.04317 * 1 2 3 28 28 H 1.09006 * 109.47417 * 239.99840 * 2 1 3 29 29 H 1.09003 * 109.47234 * 120.00050 * 2 1 3 30 30 H 0.96997 * 119.99822 * 179.97438 * 8 7 5 31 31 H 0.96700 * 117.00078 * 185.02608 * 16 14 13 32 32 H 1.09000 * 110.90753 * 215.98595 * 17 13 3 33 33 H 1.08995 * 110.91074 * 339.59640 * 17 13 3 34 34 H 1.09005 * 110.61264 * 278.52109 * 18 17 13 35 35 H 1.08992 * 110.61807 * 155.52687 * 18 17 13 36 36 H 1.08994 * 115.54803 * 282.21091 * 22 20 19 37 37 H 1.09004 * 117.49694 * 359.97438 * 23 22 20 38 38 H 1.08995 * 117.50399 * 145.01968 * 23 22 20 39 39 H 1.08996 * 117.49897 * 214.98129 * 24 22 20 40 40 H 1.09005 * 117.49932 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5775 1.9914 -0.8204 5 6 3.5369 1.4460 -0.1741 6 1 4.1686 1.8701 0.5924 7 6 4.1003 0.9028 -1.3092 8 7 3.3310 0.3865 -2.2426 9 14 5.9562 0.9003 -1.5214 10 1 6.5905 1.5360 -0.3387 11 1 6.4378 -0.4985 -1.6500 12 1 6.3156 1.6620 -2.7444 13 6 1.6794 2.1109 1.3281 14 6 0.1877 2.2967 1.4357 15 8 -0.4028 1.8919 2.4090 16 8 -0.4848 2.9120 0.4504 17 6 2.2113 1.2748 2.5175 18 6 3.5343 2.0054 2.8619 19 8 3.2161 3.3973 2.6479 20 6 2.4028 3.4647 1.4645 21 1 3.0300 3.6395 0.5904 22 6 1.3767 4.5914 1.6019 23 6 1.1557 5.4974 0.3891 24 6 1.9026 6.0281 1.6144 25 1 -0.3634 -0.9973 -0.2480 26 1 -0.3633 0.2839 0.9876 27 1 -0.3633 0.7133 -0.7398 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7274 0.0047 -3.0414 31 1 -1.4266 3.0748 0.5968 32 1 1.5181 1.3091 3.3579 33 1 2.4029 0.2455 2.2146 34 1 4.3339 1.6871 2.1928 35 1 3.8101 1.8302 3.9017 36 1 0.5124 4.3663 2.2266 37 1 1.7416 5.2911 -0.5067 38 1 0.1457 5.8686 0.2154 39 1 1.3839 6.7483 2.2470 40 1 2.9795 6.1706 1.5251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:33 Heat of formation + Delta-G solvation = -126.437706 kcal Electronic energy + Delta-G solvation = -22995.978221 eV Core-core repulsion = 19776.073129 eV Total energy + Delta-G solvation = -3219.905092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36193 -39.95491 -37.76541 -36.95484 -36.73020 -33.95014 -32.22423 -30.46239 -28.73765 -25.87131 -24.74723 -23.79710 -23.11921 -22.91680 -21.04233 -20.35785 -18.84330 -18.40111 -17.88110 -17.48114 -16.70559 -16.40746 -16.07828 -15.76474 -15.40602 -14.77438 -14.67394 -14.45407 -14.02353 -13.72728 -13.26342 -13.15015 -12.86996 -12.80045 -12.60502 -12.57476 -12.45604 -12.34572 -12.21618 -12.12827 -11.64318 -11.56058 -11.31074 -11.12884 -11.06538 -10.89326 -10.68452 -10.33609 -10.22472 -8.04813 -6.15818 1.32407 1.42549 1.47929 1.55919 2.25429 2.48087 2.66851 3.23275 3.29734 3.49563 3.63680 3.99625 4.18901 4.22516 4.27474 4.36394 4.45848 4.47548 4.50834 4.56489 4.62261 4.74765 4.82867 4.89054 4.96932 5.01601 5.08227 5.16733 5.24524 5.29090 5.32219 5.33137 5.48928 5.67487 5.73440 5.93976 6.00352 6.09881 6.37425 6.92393 7.14260 7.51405 9.00200 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.009516 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.840186 B = 2941.809222 C = 3477.139310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C 0.077 3.923 4 H 0.015 0.985 5 C -0.522 4.522 6 H 0.072 0.928 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.287 1.287 13 C -0.072 4.072 14 C 0.525 3.475 15 O -0.556 6.556 16 O -0.501 6.501 17 C -0.136 4.136 18 C 0.046 3.954 19 O -0.385 6.385 20 C 0.129 3.871 21 H 0.079 0.921 22 C -0.179 4.179 23 C -0.146 4.146 24 C -0.160 4.160 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.259 0.741 31 H 0.417 0.583 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 6.173 5.894 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C 0.058 3.942 4 H 0.033 0.967 5 C -0.560 4.560 6 H 0.090 0.910 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.213 1.213 13 C -0.073 4.073 14 C 0.371 3.629 15 O -0.449 6.449 16 O -0.313 6.313 17 C -0.173 4.173 18 C -0.029 4.029 19 O -0.305 6.305 20 C 0.072 3.928 21 H 0.096 0.904 22 C -0.197 4.197 23 C -0.183 4.183 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.277 0.723 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.898 6.087 6.022 9.407 hybrid contribution 0.197 -0.568 -0.519 0.795 sum -3.700 5.518 5.503 8.627 Atomic orbital electron populations 1.22049 0.97771 1.01082 1.00361 1.21676 0.93236 0.99681 1.01412 1.18586 0.95525 0.91803 0.88265 0.96675 1.21647 0.92027 1.38191 1.04154 0.90993 1.25547 1.01034 0.95209 0.95883 1.70016 1.35827 1.40231 1.09013 0.85780 0.82031 0.77455 0.78095 1.18895 1.21130 1.21292 1.21985 0.86953 0.97703 1.00690 1.22827 0.90775 0.70953 0.78375 1.90616 1.70720 1.49774 1.33757 1.84654 1.29371 1.71938 1.45339 1.23188 0.97413 1.00525 0.96154 1.23798 0.96528 0.80281 1.02334 1.88754 1.70109 1.26219 1.45384 1.22227 0.90512 0.91462 0.88621 0.90364 1.22327 0.99965 0.92559 1.04895 1.22913 1.02550 1.01018 0.91797 1.22941 1.00781 0.94542 1.01381 0.93117 0.93585 0.93208 0.91211 0.93906 0.93197 0.72341 0.90251 0.89168 0.91265 0.87077 0.89144 0.89404 0.86605 0.86979 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.14 8.52 71.98 0.61 -5.53 16 2 C -0.12 -5.53 5.07 30.59 0.16 -5.38 16 3 C 0.08 3.52 1.30 -11.54 -0.01 3.50 16 4 H 0.02 0.78 7.72 -2.38 -0.02 0.77 16 5 C -0.52 -25.72 6.72 25.60 0.17 -25.55 16 6 H 0.07 3.46 4.08 -2.91 -0.01 3.44 16 7 C 0.02 1.15 5.28 84.66 0.45 1.60 16 8 N -0.91 -49.45 11.34 21.45 0.24 -49.20 16 9 Si 0.94 41.26 29.54 68.60 2.03 43.29 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 13 C -0.07 -2.85 0.56 -51.94 -0.03 -2.88 16 14 C 0.52 19.27 1.93 71.24 0.14 19.40 16 15 O -0.56 -21.85 15.13 21.95 0.33 -21.52 16 16 O -0.50 -15.49 10.73 -51.37 -0.55 -16.04 16 17 C -0.14 -5.09 5.60 31.90 0.18 -4.91 16 18 C 0.05 1.63 7.17 72.67 0.52 2.15 16 19 O -0.39 -14.74 11.19 -148.98 -1.67 -16.41 16 20 C 0.13 4.97 2.66 30.97 0.08 5.05 16 21 H 0.08 3.37 6.34 -2.39 -0.02 3.35 16 22 C -0.18 -5.78 3.74 -10.79 -0.04 -5.82 16 23 C -0.15 -4.00 9.75 30.59 0.30 -3.71 16 24 C -0.16 -4.27 10.25 30.59 0.31 -3.95 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.78 5.09 -2.39 -0.01 1.77 16 27 H 0.05 1.96 7.32 -2.39 -0.02 1.95 16 28 H 0.07 3.59 5.97 -2.38 -0.01 3.57 16 29 H 0.04 1.88 5.66 -2.39 -0.01 1.86 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.42 8.50 9.11 -74.06 -0.67 7.82 16 32 H 0.08 2.94 6.84 -2.39 -0.02 2.92 16 33 H 0.09 3.47 5.48 -2.39 -0.01 3.46 16 34 H 0.07 2.62 5.77 -2.38 -0.01 2.61 16 35 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 2.97 6.59 -2.39 -0.02 2.96 16 37 H 0.09 2.65 8.10 -2.38 -0.02 2.63 16 38 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -59.35 300.86 3.62 -55.73 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.40 Total: 30.17 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 2.83 Total: -26.02 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.24 Total: -49.20 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -1.89 Total: -53.97 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -59.35 3.62 -55.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.704 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds