Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00406 * 2 1 4 4 H 1.48495 * 109.47449 * 89.99797 * 3 2 1 5 5 H 1.48506 * 109.47058 * 329.99649 * 3 2 1 6 6 H 1.48502 * 109.47364 * 210.00022 * 3 2 1 7 7 C 1.37880 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46860 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46743 * 180.02562 * 11 10 9 13 13 C 1.50705 * 110.43974 * 59.30276 * 12 11 10 14 14 O 1.20823 * 119.99516 * 8.61910 * 13 12 11 15 15 O 1.34224 * 120.00172 * 188.61848 * 13 12 11 16 16 C 1.54808 * 110.49081 * 296.75532 * 12 11 10 17 17 C 1.55354 * 101.93118 * 262.17996 * 16 12 11 18 18 O 1.44377 * 103.50096 * 322.94492 * 17 16 12 19 19 C 1.43741 * 106.97586 * 40.09455 * 18 17 16 20 20 H 1.08995 * 109.88413 * 92.91016 * 19 18 17 21 21 C 1.53001 * 110.00351 * 213.99160 * 19 18 17 22 22 C 1.52998 * 117.49891 * 5.34898 * 21 19 18 23 23 C 1.53001 * 60.00168 * 252.50817 * 22 21 19 24 24 H 0.96996 * 120.00348 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47014 * 300.00379 * 9 7 2 26 26 H 1.09000 * 109.46636 * 60.00132 * 9 7 2 27 27 H 1.08998 * 109.47708 * 300.00603 * 10 9 7 28 28 H 1.09000 * 109.47025 * 60.00719 * 10 9 7 29 29 H 1.08997 * 109.46786 * 300.00370 * 11 10 9 30 30 H 1.09000 * 109.46731 * 60.00518 * 11 10 9 31 31 H 0.96700 * 117.00209 * 179.97438 * 15 13 12 32 32 H 1.09004 * 110.90529 * 20.40454 * 16 12 11 33 33 H 1.08997 * 110.91196 * 144.00921 * 16 12 11 34 34 H 1.08996 * 110.58204 * 204.45352 * 17 16 12 35 35 H 1.08997 * 110.77360 * 81.52853 * 17 16 12 36 36 H 1.09006 * 115.55136 * 151.04902 * 21 19 18 37 37 H 1.09001 * 117.49925 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50424 * 145.02409 * 22 21 19 39 39 H 1.09001 * 117.49795 * 252.51335 * 23 22 21 40 40 H 1.09002 * 117.49949 * 107.48438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 1.4468 2.6526 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4800 -4.9872 0.0020 12 6 2.4742 -6.1501 0.0024 13 6 3.3642 -6.0812 1.2166 14 8 3.1287 -5.2843 2.0937 15 8 4.4185 -6.9050 1.3236 16 6 3.3225 -6.1382 -1.2925 17 6 2.5776 -7.1782 -2.1740 18 8 2.1628 -8.1867 -1.2277 19 6 1.7280 -7.4976 -0.0436 20 1 0.6528 -7.3245 -0.0892 21 6 2.0694 -8.3239 1.1980 22 6 2.8841 -9.6027 0.9934 23 6 1.3973 -9.6907 1.3437 24 1 -0.4850 -0.8400 0.0004 25 1 0.6246 -2.5563 0.8919 26 1 0.6239 -2.5574 -0.8880 27 1 2.8712 -3.6048 -0.8889 28 1 2.8724 -3.6041 0.8910 29 1 0.8537 -5.0446 0.8922 30 1 0.8530 -5.0450 -0.8878 31 1 4.9603 -6.8234 2.1203 32 1 3.3099 -5.1521 -1.7567 33 1 4.3446 -6.4588 -1.0910 34 1 3.2518 -7.6035 -2.9174 35 1 1.7115 -6.7259 -2.6571 36 1 2.2498 -7.7521 2.1083 37 1 3.1765 -9.8555 -0.0257 38 1 3.6007 -9.8725 1.7692 39 1 1.1359 -10.0182 2.3500 40 1 0.7119 -10.0012 0.5551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821975113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -127.861872 kcal Electronic energy + Delta-G solvation = -21587.580106 eV Core-core repulsion = 18367.613258 eV Total energy + Delta-G solvation = -3219.966849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28528 -39.06637 -36.74591 -36.14938 -34.96906 -33.24878 -30.81085 -29.63634 -26.54891 -24.52172 -23.31660 -23.02053 -22.38916 -21.26572 -19.93298 -19.59016 -17.88538 -17.06350 -16.75305 -16.10655 -15.80023 -15.55797 -15.28264 -14.36890 -13.94624 -13.74250 -13.69427 -13.36456 -12.99647 -12.40693 -12.27053 -11.94127 -11.83654 -11.54948 -11.52032 -11.38462 -11.31165 -10.78750 -10.73205 -10.68403 -10.37319 -10.31806 -10.13234 -10.07423 -9.73839 -9.63246 -9.51222 -8.46607 -8.26295 -6.30693 -3.98621 2.28099 3.01001 3.46348 3.49975 3.61513 3.65609 3.71432 4.35562 4.40216 4.59134 4.62185 4.80840 4.89432 4.92888 5.06565 5.15604 5.31734 5.45988 5.47656 5.56247 5.56862 5.64538 5.76242 5.79543 5.87037 5.88144 5.98758 6.00643 6.15629 6.28041 6.51495 6.66018 6.70950 6.81080 7.06676 7.48865 7.62796 8.01703 8.29416 8.53008 8.95149 9.73331 11.10168 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.004482 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.784025 B = 6245.203095 C = 6414.940571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.598 4.598 8 H 0.047 0.953 9 C 0.011 3.989 10 C -0.112 4.112 11 C -0.099 4.099 12 C -0.076 4.076 13 C 0.496 3.504 14 O -0.497 6.497 15 O -0.512 6.512 16 C -0.147 4.147 17 C 0.050 3.950 18 O -0.366 6.366 19 C 0.124 3.876 20 H 0.086 0.914 21 C -0.167 4.167 22 C -0.147 4.147 23 C -0.176 4.176 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.004 0.996 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -19.788 -0.970 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.637 4.637 8 H 0.065 0.935 9 C -0.026 4.026 10 C -0.149 4.149 11 C -0.137 4.137 12 C -0.077 4.077 13 C 0.338 3.662 14 O -0.383 6.383 15 O -0.323 6.323 16 C -0.184 4.184 17 C -0.027 4.027 18 O -0.285 6.285 19 C 0.067 3.933 20 H 0.104 0.896 21 C -0.185 4.185 22 C -0.184 4.184 23 C -0.213 4.213 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.261 0.739 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.105 -18.181 -1.116 19.211 hybrid contribution 0.570 -1.273 0.699 1.560 sum 6.675 -19.453 -0.417 20.571 Atomic orbital electron populations 1.70744 1.06869 1.30559 1.47064 1.25839 0.96586 1.02685 0.93911 0.83524 0.74634 0.75168 0.76733 1.21494 1.21012 1.21557 1.22084 0.94225 0.92120 1.55245 0.93498 1.19179 0.94575 0.93124 0.95741 1.21724 0.99236 0.92772 1.01167 1.21700 0.96330 0.92985 1.02641 1.22047 0.95151 0.98423 0.92077 1.22835 0.79184 0.76554 0.87673 1.90771 1.70702 1.35822 1.41055 1.84588 1.40047 1.59372 1.48326 1.23437 0.99760 1.01843 0.93400 1.23631 0.98233 0.88583 0.92206 1.88832 1.84780 1.30259 1.24605 1.22202 0.97777 0.88076 0.85294 0.89633 1.22477 1.07446 0.90779 0.97831 1.22753 0.93281 0.99147 1.03217 1.22971 0.96580 0.99190 1.02572 0.92133 0.97481 0.97747 0.93440 0.91521 0.91035 0.90864 0.73899 0.88316 0.89306 0.88548 0.91539 0.87580 0.87621 0.89289 0.88999 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.83 13.65 55.43 0.76 -28.07 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 26.11 29.90 -169.99 -5.08 21.02 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.60 -17.73 9.11 -34.44 -0.31 -18.04 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 10 C -0.11 -2.39 4.64 -26.73 -0.12 -2.51 16 11 C -0.10 -1.69 3.69 -26.73 -0.10 -1.79 16 12 C -0.08 -1.07 0.65 -154.13 -0.10 -1.17 16 13 C 0.50 7.37 4.42 36.01 0.16 7.53 16 14 O -0.50 -9.26 14.90 -18.75 -0.28 -9.54 16 15 O -0.51 -5.81 11.35 -39.24 -0.45 -6.25 16 16 C -0.15 -1.82 6.04 -24.53 -0.15 -1.96 16 17 C 0.05 0.54 7.73 38.41 0.30 0.83 16 18 O -0.37 -4.50 9.59 -35.23 -0.34 -4.84 16 19 C 0.12 1.58 3.44 -26.15 -0.09 1.49 16 20 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 21 C -0.17 -1.97 4.10 -90.62 -0.37 -2.34 16 22 C -0.15 -1.52 9.66 -26.73 -0.26 -1.78 16 23 C -0.18 -1.78 10.23 -26.73 -0.27 -2.06 16 24 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 25 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 26 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 27 H 0.05 0.97 6.35 -51.93 -0.33 0.64 16 28 H 0.07 1.54 5.86 -51.93 -0.30 1.24 16 29 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.40 2.99 9.10 45.56 0.41 3.40 16 32 H 0.10 1.29 6.10 -51.93 -0.32 0.97 16 33 H 0.09 1.05 7.33 -51.93 -0.38 0.67 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.36 6.38 -51.93 -0.33 1.02 16 37 H 0.11 1.16 7.06 -51.93 -0.37 0.79 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -34.32 317.95 -7.43 -41.75 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.30 Total: 2.47 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.54 Total: -21.34 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: 0.76 Total: -28.07 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.06 Total: -20.63 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.32 -7.43 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821975113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.108 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds