Wall clock time and date at job start Mon Mar 30 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00406 * 2 1 4 4 H 1.48495 * 109.47449 * 89.99797 * 3 2 1 5 5 H 1.48506 * 109.47058 * 329.99649 * 3 2 1 6 6 H 1.48502 * 109.47364 * 210.00022 * 3 2 1 7 7 C 1.37880 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46860 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46743 * 180.02562 * 11 10 9 13 13 C 1.50705 * 110.43974 * 59.30276 * 12 11 10 14 14 O 1.20823 * 119.99516 * 8.61910 * 13 12 11 15 15 O 1.34224 * 120.00172 * 188.61848 * 13 12 11 16 16 C 1.54808 * 110.49081 * 296.75532 * 12 11 10 17 17 C 1.55354 * 101.93118 * 262.17996 * 16 12 11 18 18 O 1.44377 * 103.50096 * 322.94492 * 17 16 12 19 19 C 1.43741 * 106.97586 * 40.09455 * 18 17 16 20 20 H 1.08995 * 109.88413 * 92.91016 * 19 18 17 21 21 C 1.53001 * 110.00351 * 213.99160 * 19 18 17 22 22 C 1.52998 * 117.49891 * 5.34898 * 21 19 18 23 23 C 1.53001 * 60.00168 * 252.50817 * 22 21 19 24 24 H 0.96996 * 120.00348 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47014 * 300.00379 * 9 7 2 26 26 H 1.09000 * 109.46636 * 60.00132 * 9 7 2 27 27 H 1.08998 * 109.47708 * 300.00603 * 10 9 7 28 28 H 1.09000 * 109.47025 * 60.00719 * 10 9 7 29 29 H 1.08997 * 109.46786 * 300.00370 * 11 10 9 30 30 H 1.09000 * 109.46731 * 60.00518 * 11 10 9 31 31 H 0.96700 * 117.00209 * 179.97438 * 15 13 12 32 32 H 1.09004 * 110.90529 * 20.40454 * 16 12 11 33 33 H 1.08997 * 110.91196 * 144.00921 * 16 12 11 34 34 H 1.08996 * 110.58204 * 204.45352 * 17 16 12 35 35 H 1.08997 * 110.77360 * 81.52853 * 17 16 12 36 36 H 1.09006 * 115.55136 * 151.04902 * 21 19 18 37 37 H 1.09001 * 117.49925 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50424 * 145.02409 * 22 21 19 39 39 H 1.09001 * 117.49795 * 252.51335 * 23 22 21 40 40 H 1.09002 * 117.49949 * 107.48438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 1.4468 2.6526 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4800 -4.9872 0.0020 12 6 2.4742 -6.1501 0.0024 13 6 3.3642 -6.0812 1.2166 14 8 3.1287 -5.2843 2.0937 15 8 4.4185 -6.9050 1.3236 16 6 3.3225 -6.1382 -1.2925 17 6 2.5776 -7.1782 -2.1740 18 8 2.1628 -8.1867 -1.2277 19 6 1.7280 -7.4976 -0.0436 20 1 0.6528 -7.3245 -0.0892 21 6 2.0694 -8.3239 1.1980 22 6 2.8841 -9.6027 0.9934 23 6 1.3973 -9.6907 1.3437 24 1 -0.4850 -0.8400 0.0004 25 1 0.6246 -2.5563 0.8919 26 1 0.6239 -2.5574 -0.8880 27 1 2.8712 -3.6048 -0.8889 28 1 2.8724 -3.6041 0.8910 29 1 0.8537 -5.0446 0.8922 30 1 0.8530 -5.0450 -0.8878 31 1 4.9603 -6.8234 2.1203 32 1 3.3099 -5.1521 -1.7567 33 1 4.3446 -6.4588 -1.0910 34 1 3.2518 -7.6035 -2.9174 35 1 1.7115 -6.7259 -2.6571 36 1 2.2498 -7.7521 2.1083 37 1 3.1765 -9.8555 -0.0257 38 1 3.6007 -9.8725 1.7692 39 1 1.1359 -10.0182 2.3500 40 1 0.7119 -10.0012 0.5551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821975113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:42 Heat of formation + Delta-G solvation = -149.972991 kcal Electronic energy + Delta-G solvation = -21588.538917 eV Core-core repulsion = 18367.613258 eV Total energy + Delta-G solvation = -3220.925659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38916 -40.12338 -37.77706 -37.19087 -36.56629 -35.06830 -32.51157 -30.61300 -28.31500 -25.66218 -25.19612 -23.99023 -23.18233 -22.90554 -21.13810 -20.76621 -19.03693 -18.89295 -18.11797 -17.21872 -16.79648 -16.57178 -16.43067 -15.67986 -15.48153 -15.30292 -15.21119 -14.56885 -14.51782 -13.84755 -13.55418 -13.31873 -13.09008 -12.89254 -12.78881 -12.67637 -12.51279 -12.30005 -12.09388 -11.97056 -11.88057 -11.77592 -11.57426 -11.25228 -11.11063 -11.08449 -10.65846 -10.62032 -10.55302 -8.71334 -6.41095 1.12105 1.49628 1.59382 1.77414 1.97002 2.54689 2.72102 2.81107 3.13866 3.31994 3.40205 3.50766 3.88135 3.98579 4.03337 4.12204 4.18205 4.23357 4.39154 4.42247 4.49775 4.57242 4.68710 4.80014 4.82295 4.83149 4.93290 4.96735 4.98448 5.01408 5.08251 5.18175 5.36070 5.39232 5.51908 5.64007 5.78488 5.99355 6.16647 6.56325 6.97951 7.40833 8.69614 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.004482 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.784025 B = 6245.203095 C = 6414.940571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.619 4.619 8 H 0.046 0.954 9 C 0.011 3.989 10 C -0.097 4.097 11 C -0.090 4.090 12 C -0.077 4.077 13 C 0.503 3.497 14 O -0.543 6.543 15 O -0.497 6.497 16 C -0.144 4.144 17 C 0.051 3.949 18 O -0.368 6.368 19 C 0.130 3.870 20 H 0.083 0.917 21 C -0.185 4.185 22 C -0.137 4.137 23 C -0.168 4.168 24 H 0.255 0.745 25 H -0.020 1.020 26 H -0.006 1.006 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.422 0.578 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -20.976 -1.730 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.657 4.657 8 H 0.064 0.936 9 C -0.026 4.026 10 C -0.135 4.135 11 C -0.128 4.128 12 C -0.079 4.079 13 C 0.347 3.653 14 O -0.434 6.434 15 O -0.310 6.310 16 C -0.182 4.182 17 C -0.025 4.025 18 O -0.287 6.287 19 C 0.071 3.929 20 H 0.101 0.899 21 C -0.203 4.203 22 C -0.173 4.173 23 C -0.205 4.205 24 H 0.064 0.936 25 H -0.002 1.002 26 H 0.013 0.987 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.283 0.717 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.622 -19.422 -1.879 20.949 hybrid contribution 0.117 -0.966 0.948 1.359 sum 7.739 -20.389 -0.931 21.828 Atomic orbital electron populations 1.70884 1.07892 1.29809 1.48901 1.27489 0.96654 1.06905 0.92657 0.82909 0.74267 0.70964 0.77756 1.20050 1.20368 1.19229 1.22518 0.94503 0.93654 1.55029 0.93568 1.19137 0.95057 0.94565 0.93840 1.21501 0.98109 0.93103 1.00758 1.21507 0.96638 0.92120 1.02526 1.21959 0.94950 0.97965 0.92984 1.22906 0.79440 0.75866 0.87075 1.90762 1.72024 1.37914 1.42663 1.84529 1.39111 1.57912 1.49445 1.23449 1.00120 1.02113 0.92507 1.23783 0.98765 0.87966 0.92001 1.88833 1.84792 1.30526 1.24540 1.22094 0.97383 0.87281 0.86096 0.89889 1.22396 1.09632 0.91351 0.96923 1.22786 0.93654 0.97445 1.03460 1.23049 0.96650 0.97390 1.03380 0.93586 1.00196 0.98725 0.92347 0.93300 0.92591 0.89597 0.71681 0.89091 0.88400 0.85894 0.91061 0.88851 0.87937 0.87983 0.87792 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.13 13.65 21.45 0.29 -59.84 16 2 C -0.04 -2.41 5.46 84.66 0.46 -1.95 16 3 Si 1.12 52.03 29.90 68.60 2.05 54.08 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.62 -37.29 9.11 25.60 0.23 -37.05 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.01 0.60 4.28 29.85 0.13 0.73 16 10 C -0.10 -4.25 4.64 30.60 0.14 -4.11 16 11 C -0.09 -3.13 3.69 30.60 0.11 -3.02 16 12 C -0.08 -2.12 0.65 -51.94 -0.03 -2.16 16 13 C 0.50 14.71 4.42 71.24 0.32 15.02 16 14 O -0.54 -20.63 14.90 21.97 0.33 -20.30 16 15 O -0.50 -10.40 11.35 -51.36 -0.58 -10.98 16 16 C -0.14 -3.30 6.04 32.02 0.19 -3.11 16 17 C 0.05 0.96 7.73 72.79 0.56 1.52 16 18 O -0.37 -8.18 9.59 -148.98 -1.43 -9.60 16 19 C 0.13 3.12 3.44 30.97 0.11 3.22 16 20 H 0.08 2.02 7.69 -2.39 -0.02 2.01 16 21 C -0.18 -4.09 4.10 -10.79 -0.04 -4.14 16 22 C -0.14 -2.49 9.66 30.59 0.30 -2.19 16 23 C -0.17 -3.05 10.23 30.60 0.31 -2.74 16 24 H 0.25 16.56 7.22 -92.71 -0.67 15.89 16 25 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 26 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 27 H 0.06 2.39 6.35 -2.39 -0.02 2.37 16 28 H 0.05 2.32 5.86 -2.39 -0.01 2.30 16 29 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.42 5.47 9.10 -74.06 -0.67 4.79 16 32 H 0.09 2.23 6.10 -2.39 -0.01 2.22 16 33 H 0.10 2.07 7.33 -2.39 -0.02 2.05 16 34 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 2.33 6.38 -2.38 -0.02 2.31 16 37 H 0.10 1.97 7.06 -2.39 -0.02 1.95 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -74.85 317.95 3.91 -70.93 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.47 Total: 15.67 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.79 Total: -39.96 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.29 Total: -59.84 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.68 Total: -40.89 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -74.85 3.91 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821975113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.039 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds