Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99674 * 2 1 4 4 H 1.48508 * 109.47137 * 270.00202 * 3 2 1 5 5 H 1.48498 * 109.47413 * 30.00306 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00239 * 3 2 1 7 7 C 1.37870 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47265 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47013 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47013 * 179.97438 * 11 10 9 13 13 C 1.50697 * 110.44069 * 302.54384 * 12 11 10 14 14 O 1.20818 * 120.00232 * 124.36425 * 13 12 11 15 15 O 1.34233 * 119.99788 * 304.37134 * 13 12 11 16 16 C 1.54812 * 110.48810 * 65.23542 * 12 11 10 17 17 C 1.54988 * 102.09444 * 97.79100 * 16 12 11 18 18 O 1.44382 * 103.49064 * 37.02512 * 17 16 12 19 19 C 1.43741 * 106.97524 * 319.93799 * 18 17 16 20 20 H 1.09000 * 109.88295 * 266.93896 * 19 18 17 21 21 C 1.52998 * 109.87939 * 145.93633 * 19 18 17 22 22 C 1.53006 * 117.50007 * 133.98933 * 21 19 18 23 23 C 1.52996 * 59.99810 * 252.51004 * 22 21 19 24 24 H 0.96996 * 120.00153 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46679 * 60.00323 * 9 7 2 26 26 H 1.08994 * 109.47078 * 300.00446 * 9 7 2 27 27 H 1.08991 * 109.47319 * 60.00159 * 10 9 7 28 28 H 1.09006 * 109.47383 * 299.99853 * 10 9 7 29 29 H 1.09001 * 109.47000 * 60.00316 * 11 10 9 30 30 H 1.09003 * 109.47196 * 300.00216 * 11 10 9 31 31 H 0.96700 * 116.99686 * 179.97438 * 15 13 12 32 32 H 1.09003 * 110.90622 * 339.59669 * 16 12 11 33 33 H 1.09003 * 110.90851 * 215.99484 * 16 12 11 34 34 H 1.08995 * 110.62405 * 278.52544 * 17 16 12 35 35 H 1.09002 * 110.62021 * 155.52518 * 17 16 12 36 36 H 1.09003 * 115.55230 * 279.69380 * 21 19 18 37 37 H 1.08998 * 117.49318 * 0.02562 * 22 21 19 38 38 H 1.08996 * 117.49705 * 145.01808 * 22 21 19 39 39 H 1.09000 * 117.49805 * 252.50762 * 23 22 21 40 40 H 1.09001 * 117.50011 * 107.48980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4748 -6.1499 -0.0044 13 6 3.3932 -6.0551 -1.1954 14 8 4.5906 -6.0373 -1.0351 15 8 2.8809 -5.9903 -2.4345 16 6 3.2897 -6.1682 1.3117 17 6 2.5271 -7.2245 2.1512 18 8 2.1351 -8.2124 1.1740 19 6 1.7281 -7.4980 -0.0050 20 1 0.6517 -7.3280 0.0176 21 6 2.1019 -8.2991 -1.2538 22 6 1.0403 -8.4404 -2.3465 23 6 1.3992 -9.6410 -1.4688 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8728 -3.6047 0.8876 28 1 2.8715 -3.6039 -0.8923 29 1 0.8535 -5.0442 -0.8923 30 1 0.8542 -5.0455 0.8877 31 1 3.5095 -5.9302 -3.1668 32 1 3.2650 -5.1931 1.7982 33 1 4.3168 -6.4842 1.1290 34 1 1.6496 -6.7806 2.6214 35 1 3.1836 -7.6658 2.9011 36 1 3.1421 -8.2194 -1.5696 37 1 0.0758 -7.9622 -2.1759 38 1 1.3820 -8.4535 -3.3814 39 1 1.9770 -10.4441 -1.9263 40 1 0.6706 -9.9532 -0.7205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821975116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = -128.721168 kcal Electronic energy + Delta-G solvation = -21518.149683 eV Core-core repulsion = 18298.145572 eV Total energy + Delta-G solvation = -3220.004110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21764 -38.93355 -36.86111 -35.87641 -35.20370 -33.01626 -30.88911 -29.61429 -26.88912 -24.34654 -23.43324 -23.10734 -22.32222 -21.18745 -19.99389 -19.43392 -17.71405 -17.09922 -16.56437 -16.00294 -15.81654 -15.31653 -14.86505 -14.72305 -14.43981 -14.01736 -13.71361 -13.05047 -12.52870 -12.45863 -12.24292 -11.96553 -11.62515 -11.57953 -11.45797 -11.34116 -11.26525 -10.88436 -10.86271 -10.63490 -10.48048 -10.39170 -10.25546 -10.12768 -9.70842 -9.70606 -9.32974 -9.05771 -8.36321 -6.01541 -4.03856 2.35658 3.11009 3.31039 3.37327 3.41109 3.42771 4.07060 4.24243 4.37743 4.45663 4.76779 4.93577 4.95007 5.03994 5.15035 5.19739 5.26324 5.34428 5.35794 5.57742 5.66075 5.67448 5.79466 5.83959 5.88989 5.96839 6.04281 6.06295 6.12011 6.29863 6.57872 6.65930 6.76538 6.80242 7.06193 7.64575 7.77871 7.97959 8.04192 8.40861 9.02979 9.60469 11.09708 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.004623 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.817456 B = 6055.133770 C = 6197.837612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.113 4.113 11 C -0.104 4.104 12 C -0.078 4.078 13 C 0.510 3.490 14 O -0.521 6.521 15 O -0.504 6.504 16 C -0.147 4.147 17 C 0.047 3.953 18 O -0.368 6.368 19 C 0.123 3.877 20 H 0.086 0.914 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.170 4.170 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.404 0.596 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -17.576 -1.500 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.150 4.150 11 C -0.142 4.142 12 C -0.079 4.079 13 C 0.353 3.647 14 O -0.409 6.409 15 O -0.315 6.315 16 C -0.184 4.184 17 C -0.029 4.029 18 O -0.287 6.287 19 C 0.065 3.935 20 H 0.103 0.897 21 C -0.179 4.179 22 C -0.191 4.191 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.406 -17.709 -1.098 17.905 hybrid contribution 0.978 1.354 -0.557 1.761 sum 3.384 -16.355 -1.655 16.783 Atomic orbital electron populations 1.69959 1.06023 1.26595 1.50906 1.25007 0.94837 0.99210 0.95304 0.86617 0.79892 0.83517 0.78131 1.20666 1.21184 1.19877 1.21248 0.93007 0.91115 1.50549 0.92810 1.19070 0.93838 0.91146 0.97301 1.21743 0.99191 0.93754 1.00338 1.21811 0.96439 0.92594 1.03345 1.22015 0.95995 0.98486 0.91410 1.22699 0.87680 0.70222 0.84070 1.90680 1.17176 1.46734 1.86348 1.84617 1.45149 1.85070 1.16645 1.23347 1.00469 1.01682 0.92884 1.23605 0.98372 0.89014 0.91921 1.88888 1.86127 1.30367 1.23358 1.22303 0.98089 0.87975 0.85142 0.89678 1.22336 0.98114 1.00752 0.96691 1.22893 0.99205 1.01286 0.95757 1.22880 1.03483 0.91292 1.03026 0.93004 0.96500 0.96478 0.92913 0.93736 0.90512 0.90671 0.73805 0.88256 0.88784 0.91493 0.88543 0.88183 0.88339 0.88449 0.88924 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.28 4.70 -26.73 -0.13 -2.41 16 11 C -0.10 -1.68 3.97 -26.73 -0.11 -1.79 16 12 C -0.08 -1.12 0.65 -154.13 -0.10 -1.22 16 13 C 0.51 7.77 3.63 36.00 0.13 7.90 16 14 O -0.52 -9.19 16.20 -18.74 -0.30 -9.49 16 15 O -0.50 -6.39 11.63 -39.27 -0.46 -6.84 16 16 C -0.15 -2.01 5.90 -24.73 -0.15 -2.15 16 17 C 0.05 0.55 7.72 38.21 0.29 0.85 16 18 O -0.37 -4.99 11.17 -35.23 -0.39 -5.38 16 19 C 0.12 1.59 3.25 -26.16 -0.09 1.51 16 20 H 0.09 1.05 7.51 -51.93 -0.39 0.66 16 21 C -0.16 -1.92 3.71 -90.62 -0.34 -2.25 16 22 C -0.15 -1.55 9.82 -26.73 -0.26 -1.81 16 23 C -0.17 -1.72 10.24 -26.73 -0.27 -1.99 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.05 6.47 -51.93 -0.34 0.72 16 28 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.40 3.47 9.10 45.56 0.41 3.89 16 32 H 0.10 1.38 6.23 -51.93 -0.32 1.05 16 33 H 0.09 1.37 6.87 -51.93 -0.36 1.01 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.30 6.39 -51.93 -0.33 0.97 16 37 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -32.70 323.47 -7.59 -40.29 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.46 Total: 2.32 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.56 Total: -16.44 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.15 Total: -21.71 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.70 -7.59 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821975116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.436 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds