Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99674 * 2 1 4 4 H 1.48508 * 109.47137 * 270.00202 * 3 2 1 5 5 H 1.48498 * 109.47413 * 30.00306 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00239 * 3 2 1 7 7 C 1.37870 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47265 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47013 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47013 * 179.97438 * 11 10 9 13 13 C 1.50697 * 110.44069 * 302.54384 * 12 11 10 14 14 O 1.20818 * 120.00232 * 124.36425 * 13 12 11 15 15 O 1.34233 * 119.99788 * 304.37134 * 13 12 11 16 16 C 1.54812 * 110.48810 * 65.23542 * 12 11 10 17 17 C 1.54988 * 102.09444 * 97.79100 * 16 12 11 18 18 O 1.44382 * 103.49064 * 37.02512 * 17 16 12 19 19 C 1.43741 * 106.97524 * 319.93799 * 18 17 16 20 20 H 1.09000 * 109.88295 * 266.93896 * 19 18 17 21 21 C 1.52998 * 109.87939 * 145.93633 * 19 18 17 22 22 C 1.53006 * 117.50007 * 133.98933 * 21 19 18 23 23 C 1.52996 * 59.99810 * 252.51004 * 22 21 19 24 24 H 0.96996 * 120.00153 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46679 * 60.00323 * 9 7 2 26 26 H 1.08994 * 109.47078 * 300.00446 * 9 7 2 27 27 H 1.08991 * 109.47319 * 60.00159 * 10 9 7 28 28 H 1.09006 * 109.47383 * 299.99853 * 10 9 7 29 29 H 1.09001 * 109.47000 * 60.00316 * 11 10 9 30 30 H 1.09003 * 109.47196 * 300.00216 * 11 10 9 31 31 H 0.96700 * 116.99686 * 179.97438 * 15 13 12 32 32 H 1.09003 * 110.90622 * 339.59669 * 16 12 11 33 33 H 1.09003 * 110.90851 * 215.99484 * 16 12 11 34 34 H 1.08995 * 110.62405 * 278.52544 * 17 16 12 35 35 H 1.09002 * 110.62021 * 155.52518 * 17 16 12 36 36 H 1.09003 * 115.55230 * 279.69380 * 21 19 18 37 37 H 1.08998 * 117.49318 * 0.02562 * 22 21 19 38 38 H 1.08996 * 117.49705 * 145.01808 * 22 21 19 39 39 H 1.09000 * 117.49805 * 252.50762 * 23 22 21 40 40 H 1.09001 * 117.50011 * 107.48980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4748 -6.1499 -0.0044 13 6 3.3932 -6.0551 -1.1954 14 8 4.5906 -6.0373 -1.0351 15 8 2.8809 -5.9903 -2.4345 16 6 3.2897 -6.1682 1.3117 17 6 2.5271 -7.2245 2.1512 18 8 2.1351 -8.2124 1.1740 19 6 1.7281 -7.4980 -0.0050 20 1 0.6517 -7.3280 0.0176 21 6 2.1019 -8.2991 -1.2538 22 6 1.0403 -8.4404 -2.3465 23 6 1.3992 -9.6410 -1.4688 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8728 -3.6047 0.8876 28 1 2.8715 -3.6039 -0.8923 29 1 0.8535 -5.0442 -0.8923 30 1 0.8542 -5.0455 0.8877 31 1 3.5095 -5.9302 -3.1668 32 1 3.2650 -5.1931 1.7982 33 1 4.3168 -6.4842 1.1290 34 1 1.6496 -6.7806 2.6214 35 1 3.1836 -7.6658 2.9011 36 1 3.1421 -8.2194 -1.5696 37 1 0.0758 -7.9622 -2.1759 38 1 1.3820 -8.4535 -3.3814 39 1 1.9770 -10.4441 -1.9263 40 1 0.6706 -9.9532 -0.7205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821975116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = -149.123075 kcal Electronic energy + Delta-G solvation = -21519.034376 eV Core-core repulsion = 18298.145572 eV Total energy + Delta-G solvation = -3220.888804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33526 -40.01736 -37.76732 -37.00573 -36.71677 -34.89454 -32.56290 -30.64620 -28.59653 -25.68744 -24.98140 -24.09244 -23.12956 -22.66387 -21.24556 -20.63250 -18.90410 -18.49485 -18.14763 -17.33915 -16.81922 -16.51043 -16.49193 -15.87605 -15.77316 -15.34926 -14.67065 -14.49437 -14.17399 -13.95218 -13.56459 -13.25496 -13.07255 -12.81508 -12.67912 -12.58908 -12.49622 -12.41539 -12.33557 -12.16985 -11.82648 -11.67005 -11.38163 -11.34990 -11.24703 -11.17464 -10.82870 -10.69627 -10.55485 -8.20958 -6.31530 1.16976 1.38937 1.39371 1.50714 2.05058 2.39849 2.53220 3.12186 3.15105 3.18527 3.40536 3.74503 3.91390 4.04183 4.09085 4.13592 4.20087 4.26581 4.33535 4.36377 4.55395 4.62689 4.77487 4.82302 4.83613 4.89099 5.00636 5.02736 5.07567 5.16879 5.18039 5.24881 5.29455 5.50400 5.57504 5.73092 5.80733 5.84702 6.24720 6.84581 6.97952 7.37580 8.90451 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.004623 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.817456 B = 6055.133770 C = 6197.837612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.028 3.972 10 C -0.099 4.099 11 C -0.093 4.093 12 C -0.078 4.078 13 C 0.511 3.489 14 O -0.551 6.551 15 O -0.499 6.499 16 C -0.149 4.149 17 C 0.049 3.951 18 O -0.379 6.379 19 C 0.126 3.874 20 H 0.094 0.906 21 C -0.180 4.180 22 C -0.146 4.146 23 C -0.161 4.161 24 H 0.264 0.736 25 H -0.006 1.006 26 H 0.000 1.000 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.422 0.578 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -18.126 -1.548 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.009 4.009 10 C -0.136 4.136 11 C -0.131 4.131 12 C -0.079 4.079 13 C 0.356 3.644 14 O -0.442 6.442 15 O -0.312 6.312 16 C -0.186 4.186 17 C -0.026 4.026 18 O -0.299 6.299 19 C 0.069 3.931 20 H 0.111 0.889 21 C -0.198 4.198 22 C -0.183 4.183 23 C -0.198 4.198 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.018 0.982 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.282 0.718 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.531 -18.270 -1.167 18.481 hybrid contribution 0.923 1.520 -0.579 1.870 sum 3.454 -16.750 -1.746 17.191 Atomic orbital electron populations 1.70072 1.07563 1.27760 1.51540 1.25888 0.95746 1.03029 0.94713 0.85538 0.78716 0.78872 0.78486 1.19867 1.20429 1.19091 1.21670 0.93252 0.92720 1.50721 0.92961 1.18962 0.94211 0.92465 0.95279 1.21509 0.98079 0.94123 0.99893 1.21635 0.96422 0.91002 1.04010 1.21993 0.95676 0.98660 0.91614 1.22852 0.87305 0.69412 0.84863 1.90666 1.18361 1.48284 1.86880 1.84574 1.45630 1.84394 1.16558 1.23337 1.00135 1.02125 0.93000 1.23738 0.98972 0.88285 0.91649 1.88877 1.86231 1.30980 1.23762 1.22297 0.98156 0.87090 0.85594 0.88856 1.22282 0.97965 1.02465 0.97127 1.22981 0.98576 1.00827 0.95888 1.22954 1.02971 0.90987 1.02861 0.92700 0.98724 0.98169 0.92774 0.94750 0.90379 0.89539 0.71774 0.88770 0.89877 0.90255 0.86516 0.89489 0.88014 0.87356 0.87820 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.01 4.70 30.59 0.14 -3.86 16 11 C -0.09 -2.94 3.97 30.59 0.12 -2.82 16 12 C -0.08 -2.18 0.65 -51.94 -0.03 -2.22 16 13 C 0.51 15.33 3.63 71.23 0.26 15.59 16 14 O -0.55 -19.45 16.20 21.99 0.36 -19.09 16 15 O -0.50 -12.17 11.63 -51.45 -0.60 -12.77 16 16 C -0.15 -3.96 5.90 31.89 0.19 -3.78 16 17 C 0.05 1.08 7.72 72.66 0.56 1.64 16 18 O -0.38 -9.61 11.17 -148.98 -1.66 -11.28 16 19 C 0.13 3.09 3.25 30.97 0.10 3.19 16 20 H 0.09 2.12 7.51 -2.39 -0.02 2.11 16 21 C -0.18 -4.03 3.71 -10.79 -0.04 -4.07 16 22 C -0.15 -2.62 9.82 30.59 0.30 -2.32 16 23 C -0.16 -2.91 10.24 30.59 0.31 -2.60 16 24 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.05 2.17 6.47 -2.39 -0.02 2.15 16 28 H 0.03 1.44 7.20 -2.38 -0.02 1.43 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.42 6.79 9.10 -74.06 -0.67 6.12 16 32 H 0.09 2.57 6.23 -2.39 -0.01 2.56 16 33 H 0.08 2.41 6.87 -2.39 -0.02 2.39 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.19 6.39 -2.39 -0.02 2.17 16 37 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.52 323.47 3.52 -66.00 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.36 Total: 16.35 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 2.76 Total: -29.95 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.91 Total: -43.13 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.52 3.52 -66.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821975116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.125 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds