Wall clock time and date at job start Mon Mar 30 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48503 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47459 * 300.00522 * 3 2 1 6 6 H 1.48502 * 109.46982 * 60.00588 * 3 2 1 7 7 C 1.37875 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47027 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50700 * 110.54055 * 57.38731 * 12 11 10 14 14 O 1.20824 * 120.00685 * 122.61300 * 13 12 11 15 15 O 1.34237 * 119.99532 * 302.61771 * 13 12 11 16 16 C 1.54807 * 110.48915 * 294.77170 * 12 11 10 17 17 C 1.54998 * 102.09089 * 220.44006 * 16 12 11 18 18 O 1.44382 * 103.48941 * 37.02630 * 17 16 12 19 19 C 1.43747 * 106.97593 * 319.93538 * 18 17 16 20 20 H 1.08996 * 109.87707 * 266.94438 * 19 18 17 21 21 C 1.52989 * 109.87981 * 145.93966 * 19 18 17 22 22 C 1.53000 * 117.50008 * 130.07811 * 21 19 18 23 23 C 1.52997 * 60.00347 * 252.51154 * 22 21 19 24 24 H 0.97000 * 119.99558 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46779 * 60.00027 * 9 7 2 26 26 H 1.08996 * 109.46835 * 300.00551 * 9 7 2 27 27 H 1.09000 * 109.46610 * 60.00276 * 10 9 7 28 28 H 1.08997 * 109.46903 * 300.00469 * 10 9 7 29 29 H 1.09004 * 109.47546 * 60.00668 * 11 10 9 30 30 H 1.08997 * 109.47795 * 300.00085 * 11 10 9 31 31 H 0.96703 * 116.99679 * 179.97438 * 15 13 12 32 32 H 1.08993 * 110.91045 * 102.24130 * 16 12 11 33 33 H 1.09001 * 110.93475 * 338.65024 * 16 12 11 34 34 H 1.08991 * 110.61982 * 278.52010 * 17 16 12 35 35 H 1.09006 * 110.75268 * 155.58743 * 17 16 12 36 36 H 1.09004 * 115.56709 * 275.76544 * 21 19 18 37 37 H 1.09002 * 117.49696 * 0.02562 * 22 21 19 38 38 H 1.09002 * 117.50343 * 145.02258 * 22 21 19 39 39 H 1.08999 * 117.49685 * 252.51237 * 23 22 21 40 40 H 1.08997 * 117.50044 * 107.48590 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 3.3971 -6.0576 1.1862 14 8 3.4651 -6.9736 1.9712 15 8 4.1434 -4.9574 1.3724 16 6 3.2876 -6.1671 -1.3191 17 6 3.3531 -7.6820 -1.6405 18 8 2.0584 -8.1701 -1.2281 19 6 1.7278 -7.4980 -0.0012 20 1 2.0469 -8.1007 0.8491 21 6 0.2187 -7.2567 0.0695 22 6 -0.5050 -7.6787 1.3498 23 6 -0.6942 -8.4846 0.0632 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0447 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 4.7197 -4.9442 2.1488 32 1 4.2862 -5.7586 -1.1652 33 1 2.7645 -5.6247 -2.1067 34 1 4.1452 -8.1623 -1.0662 35 1 3.5022 -7.8443 -2.7081 36 1 -0.1388 -6.3612 -0.4388 37 1 0.0942 -8.1278 2.1419 38 1 -1.3386 -7.0608 1.6838 39 1 -1.6521 -8.3969 -0.4494 40 1 -0.2195 -9.4643 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821975120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:53 Heat of formation + Delta-G solvation = -122.544000 kcal Electronic energy + Delta-G solvation = -21538.733338 eV Core-core repulsion = 18318.997089 eV Total energy + Delta-G solvation = -3219.736248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21042 -39.05040 -36.59710 -36.12848 -35.12490 -33.01577 -30.93090 -29.54457 -26.65344 -24.77034 -23.35319 -22.88890 -22.18402 -21.12161 -20.41657 -18.87601 -17.83089 -17.04408 -16.51526 -16.09083 -15.69462 -15.13449 -15.00125 -14.61101 -14.43849 -13.99172 -13.81545 -13.17591 -12.62027 -12.42983 -12.21546 -12.01853 -11.50071 -11.48229 -11.45533 -11.31390 -11.18884 -11.04422 -10.80840 -10.45891 -10.32312 -10.24783 -10.19072 -10.06258 -9.67986 -9.52291 -9.19570 -8.99708 -8.33152 -5.98760 -4.00417 2.23400 3.03264 3.30939 3.38609 3.42495 3.51078 4.14144 4.34674 4.47179 4.47366 4.78347 4.87699 5.04990 5.07008 5.17831 5.25571 5.37204 5.38615 5.42411 5.59971 5.69769 5.71971 5.79533 5.86138 5.94857 5.98777 6.10372 6.17457 6.28402 6.41704 6.55682 6.75967 6.82796 6.95379 7.23469 7.71020 7.85244 7.97155 8.02986 8.45887 9.07386 9.63599 11.12720 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.005058 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.917787 B = 5534.379736 C = 6009.491110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.121 4.121 11 C -0.101 4.101 12 C -0.079 4.079 13 C 0.499 3.501 14 O -0.524 6.524 15 O -0.491 6.491 16 C -0.139 4.139 17 C 0.042 3.958 18 O -0.364 6.364 19 C 0.118 3.882 20 H 0.090 0.910 21 C -0.162 4.162 22 C -0.173 4.173 23 C -0.167 4.167 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -15.534 -0.538 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.138 4.138 12 C -0.081 4.081 13 C 0.342 3.658 14 O -0.413 6.413 15 O -0.301 6.301 16 C -0.177 4.177 17 C -0.034 4.034 18 O -0.283 6.283 19 C 0.060 3.940 20 H 0.108 0.892 21 C -0.180 4.180 22 C -0.210 4.210 23 C -0.204 4.204 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.134 -15.826 -0.776 16.375 hybrid contribution 0.963 1.218 0.657 1.686 sum 5.097 -14.608 -0.120 15.472 Atomic orbital electron populations 1.69977 1.06044 1.26380 1.51251 1.25030 0.94821 0.99211 0.95497 0.86576 0.80146 0.83973 0.77538 1.19754 1.21075 1.21089 1.21299 0.93078 0.91047 1.49972 0.92631 1.19093 0.93982 0.91530 0.96959 1.21969 0.99065 0.92831 1.01962 1.21889 0.96316 0.92705 1.02931 1.21910 0.95069 0.99221 0.91880 1.23070 0.78118 0.78762 0.85849 1.90657 1.65413 1.39368 1.45864 1.84821 1.53795 1.41059 1.50444 1.23268 1.01361 0.97333 0.95698 1.23616 0.86175 0.92678 1.00974 1.88902 1.34906 1.64267 1.40242 1.22348 0.92711 0.90285 0.88630 0.89243 1.22600 0.91839 1.00415 1.03164 1.22995 1.02903 1.03778 0.91301 1.22828 1.00789 0.95941 1.00877 0.93139 0.96854 0.96844 0.90927 0.93196 0.90241 0.91231 0.73908 0.89261 0.88256 0.92443 0.88397 0.85788 0.88753 0.88259 0.88717 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.37 4.40 -26.73 -0.12 -2.49 16 11 C -0.10 -1.64 2.77 -26.73 -0.07 -1.71 16 12 C -0.08 -1.13 0.67 -154.13 -0.10 -1.23 16 13 C 0.50 7.35 6.83 36.01 0.25 7.60 16 14 O -0.52 -8.60 16.02 -18.75 -0.30 -8.90 16 15 O -0.49 -6.51 10.16 -39.28 -0.40 -6.91 16 16 C -0.14 -1.72 5.34 -24.72 -0.13 -1.85 16 17 C 0.04 0.48 7.72 38.21 0.29 0.78 16 18 O -0.36 -5.08 11.13 -35.23 -0.39 -5.47 16 19 C 0.12 1.65 3.22 -26.16 -0.08 1.57 16 20 H 0.09 1.35 6.24 -51.93 -0.32 1.03 16 21 C -0.16 -2.15 4.18 -90.62 -0.38 -2.53 16 22 C -0.17 -2.08 10.18 -26.73 -0.27 -2.35 16 23 C -0.17 -1.95 10.19 -26.73 -0.27 -2.22 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 1.43 5.30 -51.93 -0.28 1.15 16 28 H 0.05 0.96 7.41 -51.93 -0.38 0.57 16 29 H 0.08 1.26 6.70 -51.93 -0.35 0.91 16 30 H 0.07 1.16 7.42 -51.93 -0.39 0.77 16 31 H 0.40 3.53 9.10 45.56 0.41 3.95 16 32 H 0.09 1.03 7.79 -51.93 -0.40 0.63 16 33 H 0.10 1.23 7.81 -51.93 -0.41 0.83 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.12 1.71 5.54 -51.93 -0.29 1.42 16 37 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -32.45 320.90 -7.30 -39.76 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.32 Total: 3.62 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.44 Total: -17.31 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.09 Total: -21.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.45 -7.30 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821975120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.787 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds