Wall clock time and date at job start Mon Mar 30 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.53994 * 2 1 4 4 C 1.33089 * 119.99590 * 134.09871 * 3 2 1 5 5 C 1.46952 * 119.99794 * 45.44420 * 4 3 2 6 6 O 1.21535 * 120.00433 * 6.46675 * 5 4 3 7 7 O 1.34799 * 119.99846 * 186.46627 * 5 4 3 8 8 C 1.45194 * 116.99988 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47309 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47275 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00253 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00104 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00069 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99591 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47268 * 90.00335 * 14 12 10 16 16 H 1.48500 * 109.46916 * 210.00266 * 14 12 10 17 17 H 1.48497 * 109.47183 * 329.99942 * 14 12 10 18 18 C 1.53175 * 109.61307 * 120.22335 * 2 1 3 19 19 C 1.53091 * 109.16683 * 62.93195 * 18 2 1 20 20 O 1.42906 * 109.41592 * 57.60592 * 19 18 2 21 21 C 1.42896 * 114.09571 * 298.84587 * 20 19 18 22 22 C 1.53090 * 109.41780 * 61.15805 * 21 20 19 23 23 H 1.08997 * 109.46703 * 61.68158 * 1 2 3 24 24 H 1.09001 * 109.46541 * 181.67779 * 1 2 3 25 25 H 1.08994 * 109.46768 * 301.67779 * 1 2 3 26 26 H 1.08000 * 120.00174 * 314.37165 * 3 2 1 27 27 H 1.07993 * 120.00184 * 225.43696 * 4 3 2 28 28 H 1.09001 * 109.47046 * 299.99951 * 8 7 5 29 29 H 1.08998 * 109.47290 * 59.99899 * 8 7 5 30 30 H 1.09001 * 109.46902 * 299.99886 * 9 8 7 31 31 H 1.08998 * 109.47152 * 59.99662 * 9 8 7 32 32 H 0.97000 * 119.99864 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.52105 * 182.83635 * 18 2 1 34 34 H 1.09001 * 109.52605 * 303.02460 * 18 2 1 35 35 H 1.08995 * 109.47953 * 297.62306 * 19 18 2 36 36 H 1.09002 * 109.48795 * 177.59340 * 19 18 2 37 37 H 1.09001 * 109.48366 * 301.17309 * 21 20 19 38 38 H 1.09004 * 109.49243 * 181.14395 * 21 20 19 39 39 H 1.09005 * 109.52628 * 182.48594 * 22 21 20 40 40 H 1.08994 * 109.57862 * 62.32488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 6 3.0126 1.7790 0.8278 5 6 4.2006 0.9265 0.9742 6 8 4.3453 -0.0430 0.2557 7 8 5.1299 1.2199 1.9055 8 6 6.2774 0.3346 1.9934 9 6 7.2155 0.8237 3.0987 10 6 8.4067 -0.0948 3.1895 11 1 8.4866 -0.9429 2.5256 12 6 9.3943 0.1469 4.1210 13 7 10.4336 -0.6549 4.2005 14 14 9.2557 1.6134 5.2698 15 1 8.5361 1.2090 6.5042 16 1 10.6151 2.0945 5.6245 17 1 8.5059 2.7026 4.5940 18 6 2.0442 -0.7263 1.2468 19 6 1.5931 -2.1884 1.1985 20 8 2.0772 -2.7956 -0.0011 21 6 1.5914 -2.1878 -1.1997 22 6 2.0425 -0.7257 -1.2478 23 1 -0.3632 0.4875 -0.9047 24 1 -0.3632 -1.0273 0.0301 25 1 -0.3633 0.5397 0.8745 26 1 1.5983 2.1479 -0.6686 27 1 2.9335 2.6966 1.3917 28 1 5.9399 -0.6758 2.2245 29 1 6.8078 0.3316 1.0412 30 1 7.5530 1.8341 2.8681 31 1 6.6849 0.8264 4.0508 32 1 11.1284 -0.4846 4.8556 33 1 3.1331 -0.6817 1.2712 34 1 1.6391 -0.2494 2.1392 35 1 0.5042 -2.2336 1.2150 36 1 1.9922 -2.7208 2.0620 37 1 0.5024 -2.2329 -1.2147 38 1 1.9891 -2.7195 -2.0642 39 1 1.6361 -0.2482 -2.1395 40 1 3.1312 -0.6800 -1.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835266128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:27 Heat of formation + Delta-G solvation = -96.065419 kcal Electronic energy + Delta-G solvation = -21111.075052 eV Core-core repulsion = 17892.487001 eV Total energy + Delta-G solvation = -3218.588051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86276 -39.30284 -36.64154 -35.45870 -33.29188 -31.98433 -31.10168 -30.64863 -28.10297 -25.86755 -24.51796 -23.66551 -22.73687 -20.62948 -20.00997 -18.40070 -17.58542 -16.75712 -16.39197 -16.27985 -15.76965 -15.37726 -15.01081 -14.89827 -14.32176 -14.10850 -13.81402 -13.35443 -13.24812 -12.84396 -12.41281 -12.37890 -12.18568 -11.79724 -11.71088 -11.32448 -11.27011 -10.94240 -10.76737 -10.58575 -10.46855 -10.14573 -9.90684 -9.89679 -9.63910 -9.39561 -9.32891 -8.72728 -8.60920 -6.11447 -4.12434 0.73374 2.99976 3.28684 3.31719 3.36357 3.40664 3.90278 4.39830 4.42759 4.45844 4.70949 4.93717 5.01701 5.13529 5.15257 5.18510 5.22138 5.33191 5.39423 5.45777 5.53313 5.62145 5.66398 5.76632 5.82764 5.96384 5.99468 6.00335 6.07160 6.18588 6.28581 6.44151 6.48640 6.87780 7.22411 7.22843 7.25138 7.64291 8.19214 8.41537 8.90661 9.48225 11.01192 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030779 B = 0.004109 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.493368 B = 6812.475557 C = 7236.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 C -0.036 4.036 4 C -0.212 4.212 5 C 0.487 3.513 6 O -0.500 6.500 7 O -0.359 6.359 8 C 0.083 3.917 9 C -0.009 4.009 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.186 4.186 19 C 0.066 3.934 20 O -0.377 6.377 21 C 0.063 3.937 22 C -0.151 4.151 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.633 3.543 -8.984 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 C -0.055 4.055 4 C -0.231 4.231 5 C 0.336 3.664 6 O -0.393 6.393 7 O -0.276 6.276 8 C 0.010 3.990 9 C -0.047 4.047 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.708 3.292 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.223 4.223 19 C -0.010 4.010 20 O -0.295 6.295 21 C -0.014 4.014 22 C -0.188 4.188 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.238 3.061 -9.058 24.206 hybrid contribution -0.088 0.960 0.663 1.170 sum -22.326 4.021 -8.395 24.188 Atomic orbital electron populations 1.21921 0.93227 1.02425 1.02107 1.19868 0.94934 0.92232 0.96980 1.23837 0.93132 0.97598 0.90894 1.22069 0.94554 1.03368 1.03083 1.21418 0.84539 0.82072 0.78402 1.90737 1.78055 1.26865 1.43629 1.86600 1.32923 1.55699 1.52338 1.23366 0.82443 0.91804 1.01358 1.19621 0.93871 0.98071 0.93126 1.20851 1.03200 1.12319 1.20111 0.90631 1.24935 0.94827 0.96351 0.96877 1.69894 1.10140 1.37711 1.35778 0.86755 0.77495 0.83559 0.81421 1.20064 1.21179 1.18784 1.23129 1.06860 0.95952 0.96373 1.22513 0.97357 0.93250 0.87902 1.87967 1.71891 1.56112 1.13555 1.22539 0.97454 0.93309 0.88050 1.22405 1.04886 0.95516 0.96019 0.92188 0.91667 0.92213 0.84710 0.83561 0.91685 0.91705 0.95450 0.95872 0.92449 0.86752 0.91450 0.93748 0.89088 0.93700 0.89204 0.91575 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 7.92 37.16 0.29 -0.78 16 2 C -0.04 -0.42 0.50 -155.47 -0.08 -0.50 16 3 C -0.04 -0.36 8.44 -36.10 -0.30 -0.66 16 4 C -0.21 -2.55 9.28 -37.85 -0.35 -2.90 16 5 C 0.49 8.09 6.08 34.26 0.21 8.30 16 6 O -0.50 -9.14 11.05 -19.29 -0.21 -9.35 16 7 O -0.36 -6.88 10.23 -40.76 -0.42 -7.30 16 8 C 0.08 1.80 5.42 37.16 0.20 2.00 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C -0.53 -15.13 9.66 -34.44 -0.33 -15.46 16 11 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 14 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 18 C -0.19 -2.36 3.84 -26.59 -0.10 -2.46 16 19 C 0.07 0.81 6.57 37.20 0.24 1.06 16 20 O -0.38 -5.37 10.77 -35.23 -0.38 -5.75 16 21 C 0.06 0.70 6.57 37.20 0.24 0.94 16 22 C -0.15 -1.69 4.76 -26.59 -0.13 -1.81 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.50 5.02 -51.93 -0.26 0.24 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 31 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.12 1.84 3.34 -53.86 -0.18 1.66 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.44 6.57 -51.93 -0.34 0.10 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.41 6.64 -51.93 -0.34 0.06 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.49 5.65 -51.93 -0.29 1.20 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -32.17 312.67 -6.52 -38.69 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.00 Total: -0.49 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.32 Total: -10.62 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.01 Total: -22.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.17 -6.52 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.378 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds