Wall clock time and date at job start Mon Mar 30 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.53994 * 2 1 4 4 C 1.33089 * 119.99590 * 134.09871 * 3 2 1 5 5 C 1.46952 * 119.99794 * 45.44420 * 4 3 2 6 6 O 1.21535 * 120.00433 * 6.46675 * 5 4 3 7 7 O 1.34799 * 119.99846 * 186.46627 * 5 4 3 8 8 C 1.45194 * 116.99988 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47309 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47275 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00253 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00104 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00069 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99591 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47268 * 90.00335 * 14 12 10 16 16 H 1.48500 * 109.46916 * 210.00266 * 14 12 10 17 17 H 1.48497 * 109.47183 * 329.99942 * 14 12 10 18 18 C 1.53175 * 109.61307 * 120.22335 * 2 1 3 19 19 C 1.53091 * 109.16683 * 62.93195 * 18 2 1 20 20 O 1.42906 * 109.41592 * 57.60592 * 19 18 2 21 21 C 1.42896 * 114.09571 * 298.84587 * 20 19 18 22 22 C 1.53090 * 109.41780 * 61.15805 * 21 20 19 23 23 H 1.08997 * 109.46703 * 61.68158 * 1 2 3 24 24 H 1.09001 * 109.46541 * 181.67779 * 1 2 3 25 25 H 1.08994 * 109.46768 * 301.67779 * 1 2 3 26 26 H 1.08000 * 120.00174 * 314.37165 * 3 2 1 27 27 H 1.07993 * 120.00184 * 225.43696 * 4 3 2 28 28 H 1.09001 * 109.47046 * 299.99951 * 8 7 5 29 29 H 1.08998 * 109.47290 * 59.99899 * 8 7 5 30 30 H 1.09001 * 109.46902 * 299.99886 * 9 8 7 31 31 H 1.08998 * 109.47152 * 59.99662 * 9 8 7 32 32 H 0.97000 * 119.99864 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.52105 * 182.83635 * 18 2 1 34 34 H 1.09001 * 109.52605 * 303.02460 * 18 2 1 35 35 H 1.08995 * 109.47953 * 297.62306 * 19 18 2 36 36 H 1.09002 * 109.48795 * 177.59340 * 19 18 2 37 37 H 1.09001 * 109.48366 * 301.17309 * 21 20 19 38 38 H 1.09004 * 109.49243 * 181.14395 * 21 20 19 39 39 H 1.09005 * 109.52628 * 182.48594 * 22 21 20 40 40 H 1.08994 * 109.57862 * 62.32488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 6 3.0126 1.7790 0.8278 5 6 4.2006 0.9265 0.9742 6 8 4.3453 -0.0430 0.2557 7 8 5.1299 1.2199 1.9055 8 6 6.2774 0.3346 1.9934 9 6 7.2155 0.8237 3.0987 10 6 8.4067 -0.0948 3.1895 11 1 8.4866 -0.9429 2.5256 12 6 9.3943 0.1469 4.1210 13 7 10.4336 -0.6549 4.2005 14 14 9.2557 1.6134 5.2698 15 1 8.5361 1.2090 6.5042 16 1 10.6151 2.0945 5.6245 17 1 8.5059 2.7026 4.5940 18 6 2.0442 -0.7263 1.2468 19 6 1.5931 -2.1884 1.1985 20 8 2.0772 -2.7956 -0.0011 21 6 1.5914 -2.1878 -1.1997 22 6 2.0425 -0.7257 -1.2478 23 1 -0.3632 0.4875 -0.9047 24 1 -0.3632 -1.0273 0.0301 25 1 -0.3633 0.5397 0.8745 26 1 1.5983 2.1479 -0.6686 27 1 2.9335 2.6966 1.3917 28 1 5.9399 -0.6758 2.2245 29 1 6.8078 0.3316 1.0412 30 1 7.5530 1.8341 2.8681 31 1 6.6849 0.8264 4.0508 32 1 11.1284 -0.4846 4.8556 33 1 3.1331 -0.6817 1.2712 34 1 1.6391 -0.2494 2.1392 35 1 0.5042 -2.2336 1.2150 36 1 1.9922 -2.7208 2.0620 37 1 0.5024 -2.2329 -1.2147 38 1 1.9891 -2.7195 -2.0642 39 1 1.6361 -0.2482 -2.1395 40 1 3.1312 -0.6800 -1.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835266128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:26 Heat of formation + Delta-G solvation = -116.688050 kcal Electronic energy + Delta-G solvation = -21111.969317 eV Core-core repulsion = 17892.487001 eV Total energy + Delta-G solvation = -3219.482315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98020 -40.44247 -37.94583 -36.55909 -35.39274 -33.10781 -32.50726 -31.99044 -28.86888 -27.54300 -25.70121 -24.59742 -23.93370 -22.54566 -21.11080 -19.48056 -19.08305 -18.41485 -17.74466 -17.45374 -16.85974 -16.54012 -16.34226 -15.85729 -15.75500 -15.52482 -14.94614 -14.74874 -14.48092 -14.06656 -13.96359 -13.38973 -13.20262 -13.12108 -12.85090 -12.59945 -12.57092 -12.38255 -12.11984 -11.90119 -11.77716 -11.66566 -11.55268 -11.38398 -11.25862 -10.91927 -10.82543 -10.37181 -9.61608 -8.35945 -6.44417 -0.19535 1.36634 1.38568 1.51561 1.79238 1.99168 2.33218 2.98683 3.00526 3.61524 3.63219 3.88249 3.96185 4.12071 4.15723 4.17310 4.21250 4.28185 4.41030 4.60307 4.62133 4.64941 4.65286 4.69053 4.79488 4.88353 4.96935 5.04438 5.12991 5.16779 5.22860 5.25709 5.27562 5.36234 5.49676 5.57608 5.75647 6.14134 6.32584 6.61382 6.86471 7.20754 8.80395 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030779 B = 0.004109 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.493368 B = 6812.475557 C = 7236.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 C 0.001 3.999 4 C -0.238 4.238 5 C 0.478 3.522 6 O -0.525 6.525 7 O -0.365 6.365 8 C 0.098 3.902 9 C -0.002 4.002 10 C -0.544 4.544 11 H 0.033 0.967 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.956 3.044 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.245 1.245 18 C -0.189 4.189 19 C 0.063 3.937 20 O -0.412 6.412 21 C 0.057 3.943 22 C -0.149 4.149 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.180 0.820 27 H 0.171 0.829 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.271 0.729 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.970 6.114 -9.179 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.017 4.017 4 C -0.256 4.256 5 C 0.329 3.671 6 O -0.420 6.420 7 O -0.282 6.282 8 C 0.024 3.976 9 C -0.040 4.040 10 C -0.582 4.582 11 H 0.051 0.949 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.778 3.222 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.168 1.168 18 C -0.226 4.226 19 C -0.013 4.013 20 O -0.331 6.331 21 C -0.019 4.019 22 C -0.187 4.187 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.198 0.802 27 H 0.188 0.812 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.600 5.632 -9.273 27.804 hybrid contribution 0.874 0.007 0.590 1.054 sum -24.726 5.639 -8.683 26.807 Atomic orbital electron populations 1.21896 0.90194 1.03052 1.03860 1.20036 0.97157 0.92225 0.95239 1.24370 0.90961 0.98037 0.88348 1.22112 0.94231 1.03520 1.05769 1.22360 0.85204 0.82189 0.77355 1.90758 1.78494 1.28183 1.44520 1.86573 1.32644 1.55090 1.53931 1.22827 0.83324 0.91614 0.99830 1.19448 0.92867 0.97197 0.94467 1.21117 1.05358 1.12079 1.19643 0.94899 1.25967 0.94069 0.99829 0.98717 1.70043 1.11260 1.40053 1.37023 0.85583 0.78141 0.79486 0.79030 1.18711 1.20389 1.16829 1.23052 1.04494 0.96801 0.98246 1.22594 0.98838 0.92829 0.87078 1.87916 1.72985 1.57213 1.14993 1.22740 0.99059 0.93129 0.86975 1.22344 1.02506 0.96150 0.97675 0.89762 0.91615 0.91204 0.80244 0.81165 0.93023 0.92876 0.94711 0.94885 0.91995 0.90564 0.90600 0.90942 0.90247 0.90901 0.89000 0.88672 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.92 71.98 0.57 -0.85 16 2 C -0.05 -0.83 0.50 -52.81 -0.03 -0.86 16 3 C 0.00 0.01 8.44 24.53 0.21 0.22 16 4 C -0.24 -5.19 9.28 23.40 0.22 -4.97 16 5 C 0.48 16.01 6.08 70.10 0.43 16.44 16 6 O -0.53 -20.04 11.05 19.72 0.22 -19.82 16 7 O -0.37 -14.19 10.23 -57.11 -0.58 -14.77 16 8 C 0.10 4.42 5.42 71.98 0.39 4.81 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C -0.54 -32.48 9.66 25.60 0.25 -32.23 16 11 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 12 C 0.01 0.72 5.47 84.66 0.46 1.18 16 13 N -0.94 -59.71 13.96 21.45 0.30 -59.42 16 14 Si 0.96 44.21 27.47 68.60 1.88 46.09 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 18 C -0.19 -4.64 3.84 30.68 0.12 -4.52 16 19 C 0.06 1.51 6.57 72.01 0.47 1.98 16 20 O -0.41 -11.81 10.77 -148.98 -1.60 -13.41 16 21 C 0.06 1.18 6.57 72.01 0.47 1.65 16 22 C -0.15 -3.05 4.76 30.68 0.15 -2.91 16 23 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 0.72 5.02 -2.39 -0.01 0.71 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 27 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 28 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.03 1.67 7.20 -2.39 -0.02 1.65 16 31 H 0.03 1.56 7.57 -2.39 -0.02 1.55 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.08 2.54 3.34 -32.96 -0.11 2.43 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.30 6.57 -2.39 -0.02 1.28 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.09 6.64 -2.39 -0.02 1.08 16 38 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.06 1.84 5.65 -2.39 -0.01 1.83 16 Total: -1.00 -74.20 312.67 4.91 -69.29 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.87 Total: 12.07 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.84 Total: -20.03 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.97 Total: -48.00 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -74.20 4.91 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.400 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds