Wall clock time and date at job start Mon Mar 30 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.54813 * 2 1 4 4 C 1.33086 * 119.99523 * 0.02562 * 3 2 1 5 5 C 1.46956 * 119.99489 * 180.02562 * 4 3 2 6 6 O 1.21530 * 120.00368 * 359.72432 * 5 4 3 7 7 O 1.34799 * 119.99652 * 180.02562 * 5 4 3 8 8 C 1.45198 * 117.00102 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47375 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47083 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99886 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00153 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46826 * 89.99968 * 14 12 10 16 16 H 1.48496 * 109.47408 * 210.00073 * 14 12 10 17 17 H 1.48499 * 109.46973 * 330.00412 * 14 12 10 18 18 C 1.53183 * 109.54005 * 120.17944 * 2 1 3 19 19 C 1.53102 * 109.15854 * 63.06348 * 18 2 1 20 20 O 1.42906 * 109.48661 * 57.47489 * 19 18 2 21 21 C 1.42903 * 114.09344 * 298.88656 * 20 19 18 22 22 C 1.53085 * 109.41802 * 61.16460 * 21 20 19 23 23 H 1.09005 * 109.46788 * 59.99919 * 1 2 3 24 24 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 300.00416 * 1 2 3 26 26 H 1.07999 * 120.00202 * 179.97438 * 3 2 1 27 27 H 1.07999 * 120.00275 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47371 * 299.99798 * 8 7 5 29 29 H 1.09006 * 109.47027 * 60.00073 * 8 7 5 30 30 H 1.08997 * 109.47145 * 300.00474 * 9 8 7 31 31 H 1.09006 * 109.46544 * 60.00315 * 9 8 7 32 32 H 0.97002 * 119.99397 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.51826 * 182.87632 * 18 2 1 34 34 H 1.08998 * 109.52545 * 303.06457 * 18 2 1 35 35 H 1.08997 * 109.40559 * 297.49129 * 19 18 2 36 36 H 1.08999 * 109.49223 * 177.50484 * 19 18 2 37 37 H 1.08996 * 109.48327 * 301.17457 * 21 20 19 38 38 H 1.09006 * 109.48600 * 181.14768 * 21 20 19 39 39 H 1.08998 * 109.52876 * 182.48295 * 22 21 20 40 40 H 1.09001 * 109.57384 * 62.31776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 6 1.1707 2.4327 0.0005 5 6 1.6624 3.8176 -0.0001 6 8 2.8575 4.0381 0.0041 7 8 0.7878 4.8433 0.0010 8 6 1.3445 6.1843 0.0009 9 6 0.2078 7.2085 0.0015 10 6 0.7856 8.6003 0.0021 11 1 1.8564 8.7403 0.0016 12 6 -0.0529 9.6948 0.0033 13 7 -1.3570 9.5241 0.0044 14 14 0.6633 11.4200 0.0047 15 1 0.8528 11.8784 -1.3951 16 1 -0.2665 12.3415 0.7057 17 1 1.9731 11.4117 0.7044 18 6 2.0424 -0.7257 1.2479 19 6 1.5930 -2.1885 1.1985 20 8 2.0771 -2.7956 -0.0011 21 6 1.5913 -2.1878 -1.1997 22 6 2.0424 -0.7257 -1.2479 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.0963 1.6161 0.0004 27 1 0.1086 2.2368 0.0005 28 1 1.9590 6.3227 0.8904 29 1 1.9576 6.3232 -0.8896 30 1 -0.4065 7.0700 -0.8881 31 1 -0.4057 7.0697 0.8919 32 1 -1.9468 10.2942 0.0055 33 1 3.1312 -0.6812 1.2739 34 1 1.6360 -0.2483 2.1396 35 1 0.5041 -2.2336 1.2150 36 1 1.9920 -2.7209 2.0619 37 1 0.5024 -2.2329 -1.2147 38 1 1.9890 -2.7196 -2.0642 39 1 1.6361 -0.2482 -2.1395 40 1 3.1312 -0.6802 -1.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835266129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:30 Heat of formation + Delta-G solvation = -138.722374 kcal Electronic energy + Delta-G solvation = -19944.220404 eV Core-core repulsion = 16723.782608 eV Total energy + Delta-G solvation = -3220.437795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46710 -39.68763 -36.66959 -35.84561 -33.33854 -31.93663 -31.52482 -30.22092 -28.06026 -26.09704 -24.81791 -23.96981 -22.57952 -20.84997 -19.83421 -18.47500 -17.80734 -16.57715 -16.35499 -16.07421 -15.90026 -15.83775 -15.17732 -14.95079 -14.77133 -14.52661 -13.66702 -13.26566 -12.92340 -12.78576 -12.40583 -12.35625 -12.30430 -11.85914 -11.69889 -11.28994 -11.26588 -11.13493 -11.02762 -10.75338 -10.69455 -10.62415 -10.24211 -9.82601 -9.68648 -9.60839 -9.52605 -9.30062 -8.44532 -6.10704 -4.15008 1.18060 3.21065 3.22316 3.28355 3.34543 3.39473 3.53139 4.28600 4.31761 4.33669 4.41218 4.64270 4.75055 4.84047 4.92007 5.08443 5.20151 5.21814 5.25846 5.28921 5.30393 5.37765 5.52011 5.57009 5.63076 5.72413 5.81243 5.91413 6.08514 6.10094 6.24612 6.26955 6.64419 6.83056 6.98938 7.56031 7.62476 7.86814 8.19559 8.27584 8.90584 9.49343 11.00883 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.057149 B = 0.002690 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.830695 B =10406.667305 C =10552.131678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.039 4.039 3 C -0.059 4.059 4 C -0.183 4.183 5 C 0.486 3.514 6 O -0.524 6.524 7 O -0.353 6.353 8 C 0.075 3.925 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.143 4.143 19 C 0.060 3.940 20 O -0.383 6.383 21 C 0.060 3.940 22 C -0.143 4.143 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -24.495 -0.016 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.039 4.039 3 C -0.078 4.078 4 C -0.202 4.202 5 C 0.331 3.669 6 O -0.415 6.415 7 O -0.269 6.269 8 C 0.002 3.998 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.181 4.181 19 C -0.017 4.017 20 O -0.302 6.302 21 C -0.017 4.017 22 C -0.181 4.181 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.160 0.840 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.630 -24.426 -0.008 24.694 hybrid contribution 0.243 1.494 -0.012 1.514 sum 3.873 -22.931 -0.020 23.256 Atomic orbital electron populations 1.22159 0.93634 1.02425 1.03196 1.19764 0.96230 0.91829 0.96051 1.23684 1.00335 0.92856 0.90895 1.22238 1.01811 0.89117 1.06996 1.21515 0.84762 0.87431 0.73154 1.90802 1.17483 1.86593 1.46670 1.86620 1.40294 1.17410 1.82596 1.23639 0.99331 0.75857 1.00922 1.19170 0.92552 0.90677 0.98871 1.20986 0.93263 0.90059 1.52137 0.92254 1.24989 0.94802 0.99522 0.94869 1.69980 1.02305 1.30774 1.49832 0.86465 0.78966 0.83591 0.78249 1.20467 1.21034 1.19720 1.22224 1.02385 0.95991 0.97474 1.22624 0.98604 0.92686 0.87760 1.87941 1.71852 1.56611 1.13805 1.22625 0.98586 0.92672 0.87789 1.22220 1.02381 0.96000 0.97470 0.91422 0.91892 0.91427 0.85379 0.84011 0.92319 0.92335 0.95353 0.95343 0.92708 0.90476 0.90212 0.92742 0.88712 0.92721 0.88716 0.90236 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 6.58 37.16 0.24 -0.91 16 2 C -0.04 -0.32 0.74 -155.47 -0.12 -0.43 16 3 C -0.06 -0.65 8.35 -36.10 -0.30 -0.95 16 4 C -0.18 -2.40 9.12 -37.84 -0.35 -2.75 16 5 C 0.49 8.85 7.91 34.26 0.27 9.12 16 6 O -0.52 -10.74 16.01 -19.29 -0.31 -11.05 16 7 O -0.35 -7.34 10.23 -40.76 -0.42 -7.76 16 8 C 0.08 1.72 5.42 37.16 0.20 1.92 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 14 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.14 -1.07 4.91 -26.58 -0.13 -1.20 16 19 C 0.06 0.42 6.57 37.21 0.24 0.66 16 20 O -0.38 -3.38 10.77 -35.23 -0.38 -3.76 16 21 C 0.06 0.42 6.57 37.20 0.24 0.66 16 22 C -0.14 -1.07 4.91 -26.59 -0.13 -1.20 16 23 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 24 H 0.06 0.39 5.02 -51.93 -0.26 0.13 16 25 H 0.07 0.50 7.50 -51.93 -0.39 0.11 16 26 H 0.13 1.52 7.49 -52.49 -0.39 1.12 16 27 H 0.14 1.60 5.75 -52.49 -0.30 1.29 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.33 6.61 -51.93 -0.34 -0.01 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.33 6.60 -51.93 -0.34 -0.01 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -32.17 326.09 -7.04 -39.21 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -6.19 Total: -3.99 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.38 Total: -8.25 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -1.11 Total: -22.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.17 -7.04 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.508 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds