Wall clock time and date at job start Mon Mar 30 2020 07:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.54813 * 2 1 4 4 C 1.33086 * 119.99523 * 0.02562 * 3 2 1 5 5 C 1.46956 * 119.99489 * 180.02562 * 4 3 2 6 6 O 1.21530 * 120.00368 * 359.72432 * 5 4 3 7 7 O 1.34799 * 119.99652 * 180.02562 * 5 4 3 8 8 C 1.45198 * 117.00102 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47375 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47083 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99886 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00153 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46826 * 89.99968 * 14 12 10 16 16 H 1.48496 * 109.47408 * 210.00073 * 14 12 10 17 17 H 1.48499 * 109.46973 * 330.00412 * 14 12 10 18 18 C 1.53183 * 109.54005 * 120.17944 * 2 1 3 19 19 C 1.53102 * 109.15854 * 63.06348 * 18 2 1 20 20 O 1.42906 * 109.48661 * 57.47489 * 19 18 2 21 21 C 1.42903 * 114.09344 * 298.88656 * 20 19 18 22 22 C 1.53085 * 109.41802 * 61.16460 * 21 20 19 23 23 H 1.09005 * 109.46788 * 59.99919 * 1 2 3 24 24 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 300.00416 * 1 2 3 26 26 H 1.07999 * 120.00202 * 179.97438 * 3 2 1 27 27 H 1.07999 * 120.00275 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47371 * 299.99798 * 8 7 5 29 29 H 1.09006 * 109.47027 * 60.00073 * 8 7 5 30 30 H 1.08997 * 109.47145 * 300.00474 * 9 8 7 31 31 H 1.09006 * 109.46544 * 60.00315 * 9 8 7 32 32 H 0.97002 * 119.99397 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.51826 * 182.87632 * 18 2 1 34 34 H 1.08998 * 109.52545 * 303.06457 * 18 2 1 35 35 H 1.08997 * 109.40559 * 297.49129 * 19 18 2 36 36 H 1.08999 * 109.49223 * 177.50484 * 19 18 2 37 37 H 1.08996 * 109.48327 * 301.17457 * 21 20 19 38 38 H 1.09006 * 109.48600 * 181.14768 * 21 20 19 39 39 H 1.08998 * 109.52876 * 182.48295 * 22 21 20 40 40 H 1.09001 * 109.57384 * 62.31776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 6 1.1707 2.4327 0.0005 5 6 1.6624 3.8176 -0.0001 6 8 2.8575 4.0381 0.0041 7 8 0.7878 4.8433 0.0010 8 6 1.3445 6.1843 0.0009 9 6 0.2078 7.2085 0.0015 10 6 0.7856 8.6003 0.0021 11 1 1.8564 8.7403 0.0016 12 6 -0.0529 9.6948 0.0033 13 7 -1.3570 9.5241 0.0044 14 14 0.6633 11.4200 0.0047 15 1 0.8528 11.8784 -1.3951 16 1 -0.2665 12.3415 0.7057 17 1 1.9731 11.4117 0.7044 18 6 2.0424 -0.7257 1.2479 19 6 1.5930 -2.1885 1.1985 20 8 2.0771 -2.7956 -0.0011 21 6 1.5913 -2.1878 -1.1997 22 6 2.0424 -0.7257 -1.2479 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.0963 1.6161 0.0004 27 1 0.1086 2.2368 0.0005 28 1 1.9590 6.3227 0.8904 29 1 1.9576 6.3232 -0.8896 30 1 -0.4065 7.0700 -0.8881 31 1 -0.4057 7.0697 0.8919 32 1 -1.9468 10.2942 0.0055 33 1 3.1312 -0.6812 1.2739 34 1 1.6360 -0.2483 2.1396 35 1 0.5041 -2.2336 1.2150 36 1 1.9920 -2.7209 2.0619 37 1 0.5024 -2.2329 -1.2147 38 1 1.9890 -2.7196 -2.0642 39 1 1.6361 -0.2482 -2.1395 40 1 3.1312 -0.6802 -1.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835266129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:29 Heat of formation + Delta-G solvation = -157.491314 kcal Electronic energy + Delta-G solvation = -19945.034286 eV Core-core repulsion = 16723.782608 eV Total energy + Delta-G solvation = -3221.251678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48475 -40.84862 -37.92834 -36.97867 -35.46387 -32.99560 -32.18113 -32.07711 -28.69068 -27.52546 -26.27933 -24.53582 -23.86265 -22.72978 -20.89613 -19.28922 -19.20444 -18.34314 -17.51105 -17.50628 -16.97202 -16.91074 -16.50034 -15.77132 -15.58153 -15.53888 -15.07321 -14.79741 -14.39880 -14.05029 -13.40139 -13.32326 -13.18771 -13.01828 -12.89919 -12.62888 -12.60167 -12.50663 -12.27960 -12.06568 -11.84784 -11.78729 -11.58174 -11.51445 -11.41589 -11.12584 -10.63727 -10.53603 -10.40544 -8.28999 -6.42557 0.03802 1.39849 1.42030 1.53116 1.77878 1.89673 2.39129 3.00636 3.05289 3.44533 3.65891 3.73069 3.92328 4.03340 4.08049 4.18349 4.22761 4.24400 4.31905 4.39230 4.64133 4.65496 4.70358 4.72437 4.83547 4.94754 4.96655 4.98540 5.11838 5.16504 5.20547 5.21728 5.32205 5.43328 5.47028 5.52469 5.71643 6.04174 6.29908 6.68326 6.72723 7.27317 8.83801 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.057149 B = 0.002690 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.830695 B =10406.667305 C =10552.131678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.038 4.038 3 C -0.025 4.025 4 C -0.201 4.201 5 C 0.483 3.517 6 O -0.553 6.553 7 O -0.363 6.363 8 C 0.090 3.910 9 C 0.031 3.969 10 C -0.552 4.552 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.975 3.025 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.142 4.142 19 C 0.059 3.941 20 O -0.403 6.403 21 C 0.059 3.941 22 C -0.142 4.142 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.269 0.731 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -25.436 -0.028 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.038 4.038 3 C -0.044 4.044 4 C -0.220 4.220 5 C 0.331 3.669 6 O -0.446 6.446 7 O -0.279 6.279 8 C 0.017 3.983 9 C -0.006 4.006 10 C -0.590 4.590 11 H 0.083 0.917 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.180 4.180 19 C -0.017 4.017 20 O -0.322 6.322 21 C -0.017 4.017 22 C -0.180 4.180 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.181 0.819 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.900 -25.393 -0.022 25.691 hybrid contribution 0.189 1.643 -0.009 1.654 sum 4.089 -23.750 -0.030 24.099 Atomic orbital electron populations 1.22180 0.92528 1.03517 1.03295 1.19849 0.97142 0.89762 0.97013 1.23945 0.99622 0.94053 0.86741 1.22175 1.03152 0.86255 1.10396 1.22401 0.84236 0.88367 0.71896 1.90782 1.18529 1.86983 1.48343 1.86607 1.41037 1.17026 1.83266 1.23166 0.97567 0.76694 1.00895 1.18981 0.93118 0.91778 0.96720 1.21372 0.93756 0.91177 1.52651 0.91741 1.25982 0.95112 1.04214 0.93990 1.70099 1.03776 1.32401 1.50312 0.85302 0.78430 0.77713 0.78730 1.19455 1.20247 1.18779 1.22227 1.02023 0.96591 0.97134 1.22727 0.99372 0.91990 0.87645 1.87923 1.72413 1.57188 1.14667 1.22728 0.99353 0.91975 0.87675 1.22222 1.02021 0.96600 0.97129 0.91368 0.90334 0.91377 0.86341 0.81941 0.92306 0.92286 0.97471 0.97475 0.92258 0.91128 0.89672 0.91533 0.87666 0.91511 0.87668 0.89691 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 6.58 71.98 0.47 -1.45 16 2 C -0.04 -0.54 0.74 -52.81 -0.04 -0.58 16 3 C -0.02 -0.52 8.35 24.53 0.20 -0.31 16 4 C -0.20 -5.11 9.12 23.40 0.21 -4.89 16 5 C 0.48 17.68 7.91 70.11 0.55 18.24 16 6 O -0.55 -22.91 16.01 19.74 0.32 -22.59 16 7 O -0.36 -15.36 10.23 -57.10 -0.58 -15.94 16 8 C 0.09 4.22 5.42 71.98 0.39 4.61 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 11 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 12 C 0.01 0.35 5.46 84.65 0.46 0.81 16 13 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 14 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 18 C -0.14 -1.85 4.91 30.69 0.15 -1.70 16 19 C 0.06 0.68 6.57 72.02 0.47 1.15 16 20 O -0.40 -6.23 10.77 -148.98 -1.60 -7.83 16 21 C 0.06 0.68 6.57 72.01 0.47 1.15 16 22 C -0.14 -1.85 4.91 30.68 0.15 -1.70 16 23 H 0.07 0.85 7.51 -2.38 -0.02 0.83 16 24 H 0.08 0.73 5.02 -2.39 -0.01 0.72 16 25 H 0.07 0.85 7.50 -2.39 -0.02 0.83 16 26 H 0.12 2.73 7.49 -2.91 -0.02 2.70 16 27 H 0.16 3.42 5.75 -2.91 -0.02 3.41 16 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.61 6.61 -2.39 -0.02 0.60 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.62 6.60 -2.39 -0.02 0.60 16 38 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.23 326.09 5.35 -63.87 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.02 Total: 6.57 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.90 Total: -14.39 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.87 Total: -46.37 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.23 5.35 -63.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835266129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.618 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds