Wall clock time and date at job start Mon Mar 30 2020 07:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.62493 * 2 1 4 4 C 1.53231 * 109.62513 * 239.42073 * 2 1 3 5 5 C 1.52958 * 109.39874 * 185.65830 * 4 2 1 6 6 C 1.52959 * 109.81981 * 63.60195 * 5 4 2 7 7 C 1.53225 * 109.40474 * 296.40056 * 6 5 4 8 8 H 1.08996 * 109.78489 * 294.81667 * 7 6 5 9 9 O 1.45195 * 109.62557 * 174.33976 * 7 6 5 10 10 C 1.34227 * 117.00085 * 150.95386 * 9 7 6 11 11 O 1.20833 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00458 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47535 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 270.00126 * 18 16 14 20 20 H 1.48496 * 109.47029 * 30.00143 * 18 16 14 21 21 H 1.48499 * 109.47352 * 149.99973 * 18 16 14 22 22 C 1.51265 * 108.53649 * 54.62546 * 7 6 5 23 23 O 1.20764 * 120.85413 * 128.63106 * 22 7 6 24 24 H 1.08993 * 109.47127 * 299.61865 * 1 2 3 25 25 H 1.09001 * 109.46770 * 59.62382 * 1 2 3 26 26 H 1.09004 * 109.47249 * 179.61854 * 1 2 3 27 27 H 1.08992 * 109.47182 * 180.37764 * 3 2 1 28 28 H 1.09005 * 109.46938 * 300.37946 * 3 2 1 29 29 H 1.08999 * 109.47336 * 60.37543 * 3 2 1 30 30 H 1.08990 * 109.48526 * 305.63926 * 4 2 1 31 31 H 1.08998 * 109.47582 * 65.67157 * 4 2 1 32 32 H 1.09007 * 109.41274 * 183.70837 * 5 4 2 33 33 H 1.08996 * 109.41561 * 303.49164 * 5 4 2 34 34 H 1.09001 * 109.48496 * 176.41579 * 6 5 4 35 35 H 1.08999 * 109.47953 * 56.37922 * 6 5 4 36 36 H 1.09000 * 109.47335 * 59.99848 * 12 10 9 37 37 H 1.08998 * 109.47423 * 300.00043 * 12 10 9 38 38 H 1.08994 * 109.47074 * 60.00312 * 13 12 10 39 39 H 1.08998 * 109.47285 * 300.00147 * 13 12 10 40 40 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0447 -0.7342 -1.2426 5 6 3.5676 -0.8548 -1.1670 6 6 3.9608 -1.7145 0.0355 7 6 3.5182 -1.0172 1.3262 8 1 4.0708 -0.0860 1.4506 9 8 3.7678 -1.8878 2.4610 10 6 4.0185 -1.2961 3.6395 11 8 4.0284 -0.0905 3.7201 12 6 4.2863 -2.1352 4.8622 13 6 4.5405 -1.2211 6.0625 14 6 4.8090 -2.0603 7.2851 15 1 4.7996 -3.1378 7.2131 16 6 5.0665 -1.4525 8.4955 17 7 5.0774 -0.1403 8.5833 18 14 5.3999 -2.4927 10.0109 19 1 4.1197 -2.7767 10.7078 20 1 6.0360 -3.7712 9.6035 21 1 6.3091 -1.7571 10.9260 22 6 2.0381 -0.7206 1.2292 23 8 1.2812 -1.0509 2.1104 24 1 -0.3633 0.5079 0.8933 25 1 -0.3633 0.5197 -0.8866 26 1 -0.3634 -1.0277 -0.0068 27 1 3.1338 1.4382 -0.0068 28 1 1.6764 1.9578 -0.8866 29 1 1.6875 1.9539 0.8933 30 1 1.6029 -1.7296 -1.2857 31 1 1.7680 -0.1746 -2.1360 32 1 3.9402 -1.3180 -2.0808 33 1 4.0049 0.1379 -1.0612 34 1 5.0423 -1.8496 0.0478 35 1 3.4736 -2.6867 -0.0379 36 1 5.1628 -2.7597 4.6895 37 1 3.4228 -2.7689 5.0642 38 1 3.6643 -0.5963 6.2355 39 1 5.4042 -0.5876 5.8603 40 1 4.9046 0.3999 7.7964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840576267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:42 Heat of formation + Delta-G solvation = -158.698228 kcal Electronic energy + Delta-G solvation = -21010.871368 eV Core-core repulsion = 17789.567355 eV Total energy + Delta-G solvation = -3221.304013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08299 -39.51334 -37.08576 -36.26801 -33.89206 -33.40928 -31.05703 -29.31965 -27.61632 -26.14077 -25.47358 -22.98560 -21.86929 -21.68699 -19.99617 -18.62836 -17.53828 -16.78980 -16.54336 -16.18438 -15.69974 -15.14331 -15.01921 -14.34082 -14.01260 -13.71497 -13.61973 -13.33408 -12.99282 -12.77657 -12.52610 -12.36357 -12.28623 -12.03841 -11.87313 -11.73206 -11.55724 -11.38524 -11.10949 -10.83162 -10.82060 -10.79133 -10.18314 -10.15639 -10.04561 -9.86728 -9.29261 -8.59850 -8.31302 -6.35188 -4.05787 1.79895 2.68464 2.87562 3.45686 3.49478 3.65044 3.72334 4.25244 4.33925 4.43735 4.53500 4.58757 4.73738 4.84493 4.97942 5.03547 5.22940 5.29796 5.35032 5.42978 5.46539 5.49732 5.53405 5.57436 5.60740 5.68015 5.78540 5.80741 5.95140 6.02643 6.02957 6.09045 6.50881 6.80001 7.34509 7.41816 7.47088 8.10240 8.26894 8.46530 8.87635 9.67789 11.05844 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.038166 B = 0.003767 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.455097 B = 7430.871404 C = 7639.439233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.109 4.109 7 C 0.037 3.963 8 H 0.113 0.887 9 O -0.345 6.345 10 C 0.460 3.540 11 O -0.508 6.508 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.609 4.609 15 H 0.053 0.947 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 1.075 2.925 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.284 1.284 22 C 0.352 3.648 23 O -0.427 6.427 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -1.146 -23.865 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.161 4.161 6 C -0.147 4.147 7 C -0.019 4.019 8 H 0.131 0.869 9 O -0.262 6.262 10 C 0.304 3.696 11 O -0.395 6.395 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.647 4.647 15 H 0.071 0.929 16 C -0.188 4.188 17 N -0.546 5.546 18 Si 0.903 3.097 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.210 1.210 22 C 0.224 3.776 23 O -0.297 6.297 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.802 -0.865 -21.762 22.302 hybrid contribution -0.362 0.080 -1.715 1.754 sum -5.164 -0.785 -23.477 24.051 Atomic orbital electron populations 1.21716 0.92274 1.02706 1.02486 1.21339 0.97790 0.97123 0.94636 1.21863 1.01729 0.93069 1.03121 1.21696 0.95589 1.00854 0.96364 1.21620 0.95849 1.00914 0.97757 1.21610 1.02862 0.99808 0.90387 1.23275 0.95725 0.96483 0.86454 0.86916 1.86675 1.81172 1.40525 1.17848 1.24829 0.71509 0.88986 0.84253 1.90601 1.47576 1.16365 1.84934 1.21613 1.03544 0.99224 0.88871 1.19139 0.97250 0.94614 0.90646 1.22002 1.53808 0.94126 0.94773 0.92887 1.25882 0.94029 0.97490 1.01401 1.70717 1.45350 1.04794 1.33694 0.83473 0.76810 0.74458 0.74995 1.21401 1.21400 1.20963 1.25223 0.90428 0.75476 0.86477 1.90426 1.59292 1.41153 1.38821 0.91735 0.91732 0.92139 0.91567 0.91043 0.91828 0.91081 0.90231 0.90070 0.90675 0.89696 0.90156 0.88724 0.88634 0.96474 0.96501 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 7.89 37.16 0.29 -1.01 16 2 C -0.11 -1.07 0.77 -155.26 -0.12 -1.19 16 3 C -0.14 -1.24 8.20 37.15 0.30 -0.94 16 4 C -0.11 -0.76 4.71 -26.63 -0.13 -0.88 16 5 C -0.12 -0.82 5.65 -26.77 -0.15 -0.98 16 6 C -0.11 -1.03 5.61 -26.64 -0.15 -1.18 16 7 C 0.04 0.52 2.46 -27.49 -0.07 0.45 16 8 H 0.11 1.61 6.87 -51.93 -0.36 1.26 16 9 O -0.34 -6.15 9.54 -45.67 -0.44 -6.59 16 10 C 0.46 9.73 7.80 36.00 0.28 10.01 16 11 O -0.51 -11.98 15.21 -18.76 -0.29 -12.27 16 12 C -0.09 -2.09 5.75 -27.88 -0.16 -2.25 16 13 C 0.02 0.56 3.57 -27.88 -0.10 0.46 16 14 C -0.61 -17.75 9.11 -34.44 -0.31 -18.06 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 17 N -0.91 -28.88 13.65 55.43 0.76 -28.13 16 18 Si 1.07 25.71 29.90 -169.99 -5.08 20.62 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.35 5.11 5.85 -28.48 -0.17 4.94 16 23 O -0.43 -7.99 16.23 -12.85 -0.21 -8.20 16 24 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.55 6.01 -51.93 -0.31 0.23 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.46 6.42 -51.93 -0.33 0.13 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 37 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.02 0.50 7.96 -51.93 -0.41 0.09 16 39 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 40 H 0.27 8.74 7.22 -40.82 -0.29 8.44 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -35.39 326.46 -7.30 -42.69 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.39 Total: -2.82 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.57 Total: -10.23 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.76 Total: -28.13 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.93 Total: -27.06 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.39 -7.30 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840576267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.004 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds