Wall clock time and date at job start Mon Mar 30 2020 07:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.62493 * 2 1 4 4 C 1.53231 * 109.62513 * 239.42073 * 2 1 3 5 5 C 1.52958 * 109.39874 * 185.65830 * 4 2 1 6 6 C 1.52959 * 109.81981 * 63.60195 * 5 4 2 7 7 C 1.53225 * 109.40474 * 296.40056 * 6 5 4 8 8 H 1.08996 * 109.78489 * 294.81667 * 7 6 5 9 9 O 1.45195 * 109.62557 * 174.33976 * 7 6 5 10 10 C 1.34227 * 117.00085 * 150.95386 * 9 7 6 11 11 O 1.20833 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00458 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47535 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 270.00126 * 18 16 14 20 20 H 1.48496 * 109.47029 * 30.00143 * 18 16 14 21 21 H 1.48499 * 109.47352 * 149.99973 * 18 16 14 22 22 C 1.51265 * 108.53649 * 54.62546 * 7 6 5 23 23 O 1.20764 * 120.85413 * 128.63106 * 22 7 6 24 24 H 1.08993 * 109.47127 * 299.61865 * 1 2 3 25 25 H 1.09001 * 109.46770 * 59.62382 * 1 2 3 26 26 H 1.09004 * 109.47249 * 179.61854 * 1 2 3 27 27 H 1.08992 * 109.47182 * 180.37764 * 3 2 1 28 28 H 1.09005 * 109.46938 * 300.37946 * 3 2 1 29 29 H 1.08999 * 109.47336 * 60.37543 * 3 2 1 30 30 H 1.08990 * 109.48526 * 305.63926 * 4 2 1 31 31 H 1.08998 * 109.47582 * 65.67157 * 4 2 1 32 32 H 1.09007 * 109.41274 * 183.70837 * 5 4 2 33 33 H 1.08996 * 109.41561 * 303.49164 * 5 4 2 34 34 H 1.09001 * 109.48496 * 176.41579 * 6 5 4 35 35 H 1.08999 * 109.47953 * 56.37922 * 6 5 4 36 36 H 1.09000 * 109.47335 * 59.99848 * 12 10 9 37 37 H 1.08998 * 109.47423 * 300.00043 * 12 10 9 38 38 H 1.08994 * 109.47074 * 60.00312 * 13 12 10 39 39 H 1.08998 * 109.47285 * 300.00147 * 13 12 10 40 40 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0447 -0.7342 -1.2426 5 6 3.5676 -0.8548 -1.1670 6 6 3.9608 -1.7145 0.0355 7 6 3.5182 -1.0172 1.3262 8 1 4.0708 -0.0860 1.4506 9 8 3.7678 -1.8878 2.4610 10 6 4.0185 -1.2961 3.6395 11 8 4.0284 -0.0905 3.7201 12 6 4.2863 -2.1352 4.8622 13 6 4.5405 -1.2211 6.0625 14 6 4.8090 -2.0603 7.2851 15 1 4.7996 -3.1378 7.2131 16 6 5.0665 -1.4525 8.4955 17 7 5.0774 -0.1403 8.5833 18 14 5.3999 -2.4927 10.0109 19 1 4.1197 -2.7767 10.7078 20 1 6.0360 -3.7712 9.6035 21 1 6.3091 -1.7571 10.9260 22 6 2.0381 -0.7206 1.2292 23 8 1.2812 -1.0509 2.1104 24 1 -0.3633 0.5079 0.8933 25 1 -0.3633 0.5197 -0.8866 26 1 -0.3634 -1.0277 -0.0068 27 1 3.1338 1.4382 -0.0068 28 1 1.6764 1.9578 -0.8866 29 1 1.6875 1.9539 0.8933 30 1 1.6029 -1.7296 -1.2857 31 1 1.7680 -0.1746 -2.1360 32 1 3.9402 -1.3180 -2.0808 33 1 4.0049 0.1379 -1.0612 34 1 5.0423 -1.8496 0.0478 35 1 3.4736 -2.6867 -0.0379 36 1 5.1628 -2.7597 4.6895 37 1 3.4228 -2.7689 5.0642 38 1 3.6643 -0.5963 6.2355 39 1 5.4042 -0.5876 5.8603 40 1 4.9046 0.3999 7.7964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840576267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:42 Heat of formation + Delta-G solvation = -179.779338 kcal Electronic energy + Delta-G solvation = -21011.785514 eV Core-core repulsion = 17789.567355 eV Total energy + Delta-G solvation = -3222.218159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33003 -40.93812 -38.11718 -37.75804 -36.07937 -34.29812 -33.08053 -30.29351 -28.36733 -27.62629 -26.85316 -24.76786 -23.18771 -22.54970 -21.63900 -19.63034 -19.34362 -18.51683 -17.97898 -17.62112 -16.81916 -16.52185 -16.13315 -15.64931 -15.39328 -14.99764 -14.81602 -14.79005 -14.34339 -14.08482 -13.74694 -13.58350 -13.37002 -13.25989 -13.04445 -12.81977 -12.73247 -12.59785 -12.28642 -12.20341 -12.18628 -12.14133 -11.87999 -11.70244 -11.45989 -11.43942 -10.82509 -10.60419 -10.38788 -8.75306 -6.47657 0.66745 1.00522 1.44768 1.54202 1.63813 1.81334 2.56492 2.66559 3.12020 3.43864 3.53432 3.64458 3.70071 3.80359 3.89515 4.11740 4.18821 4.20278 4.23445 4.28710 4.56200 4.60860 4.64012 4.75827 4.78573 4.85241 4.92187 4.96196 5.04650 5.12773 5.14667 5.15369 5.19864 5.21067 5.23859 5.42896 5.84153 6.10963 6.21583 6.43169 6.61098 7.37754 8.64951 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.038166 B = 0.003767 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.455097 B = 7430.871404 C = 7639.439233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.141 4.141 4 C -0.103 4.103 5 C -0.119 4.119 6 C -0.104 4.104 7 C 0.021 3.979 8 H 0.109 0.891 9 O -0.342 6.342 10 C 0.466 3.534 11 O -0.543 6.543 12 C -0.089 4.089 13 C 0.025 3.975 14 C -0.622 4.622 15 H 0.069 0.931 16 C -0.041 4.041 17 N -0.937 5.937 18 Si 1.129 2.871 19 H -0.273 1.273 20 H -0.260 1.260 21 H -0.283 1.283 22 C 0.345 3.655 23 O -0.483 6.483 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.107 0.893 38 H -0.019 1.019 39 H -0.009 1.009 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 -2.616 -26.402 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.198 4.198 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.141 4.141 7 C -0.034 4.034 8 H 0.127 0.873 9 O -0.259 6.259 10 C 0.311 3.689 11 O -0.432 6.432 12 C -0.126 4.126 13 C -0.012 4.012 14 C -0.659 4.659 15 H 0.087 0.913 16 C -0.238 4.238 17 N -0.573 5.573 18 Si 0.948 3.052 19 H -0.198 1.198 20 H -0.184 1.184 21 H -0.209 1.209 22 C 0.221 3.779 23 O -0.357 6.357 24 H 0.056 0.944 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.125 0.875 38 H -0.001 1.001 39 H 0.010 0.990 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.365 -2.354 -24.366 24.866 hybrid contribution -0.525 0.570 -1.033 1.292 sum -4.889 -1.784 -25.400 25.928 Atomic orbital electron populations 1.21739 0.92212 1.02405 1.02770 1.21453 0.97900 0.97503 0.93608 1.21921 1.02185 0.92192 1.03490 1.21768 0.95763 1.00993 0.95510 1.21688 0.95579 1.01053 0.97282 1.21770 1.03622 1.00035 0.88691 1.23928 0.96109 0.96625 0.86786 0.87338 1.86612 1.80404 1.41064 1.17774 1.24504 0.70956 0.88184 0.85229 1.90585 1.49272 1.17693 1.85699 1.21388 1.05244 0.98376 0.87598 1.18954 0.94542 0.94678 0.93033 1.22448 1.52962 0.95101 0.95403 0.91310 1.27694 0.92942 0.97701 1.05500 1.70877 1.47646 1.06060 1.32766 0.82822 0.77509 0.73755 0.71120 1.19815 1.18380 1.20877 1.26082 0.90249 0.74269 0.87272 1.90407 1.60471 1.43789 1.41039 0.94381 0.88382 0.92836 0.90952 0.87663 0.94424 0.90925 0.86892 0.86815 0.89849 0.88485 0.89926 0.86047 0.87473 1.00084 0.99018 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.89 71.98 0.57 -1.90 16 2 C -0.10 -1.91 0.77 -52.67 -0.04 -1.95 16 3 C -0.14 -2.25 8.20 71.98 0.59 -1.66 16 4 C -0.10 -1.06 4.71 30.66 0.14 -0.91 16 5 C -0.12 -1.10 5.65 30.57 0.17 -0.92 16 6 C -0.10 -1.72 5.61 30.66 0.17 -1.54 16 7 C 0.02 0.59 2.46 30.10 0.07 0.66 16 8 H 0.11 3.15 6.87 -2.39 -0.02 3.13 16 9 O -0.34 -12.33 9.54 -45.24 -0.43 -12.76 16 10 C 0.47 20.32 7.80 71.23 0.56 20.88 16 11 O -0.54 -26.96 15.21 21.94 0.33 -26.63 16 12 C -0.09 -3.96 5.75 29.85 0.17 -3.79 16 13 C 0.03 1.43 3.57 29.85 0.11 1.54 16 14 C -0.62 -36.59 9.11 25.60 0.23 -36.36 16 15 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 16 C -0.04 -2.49 5.46 84.65 0.46 -2.02 16 17 N -0.94 -61.30 13.65 21.45 0.29 -61.01 16 18 Si 1.13 51.03 29.90 68.60 2.05 53.08 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 C 0.35 10.16 5.85 29.46 0.17 10.33 16 23 O -0.48 -19.05 16.23 16.56 0.27 -18.79 16 24 H 0.04 0.89 8.04 -2.39 -0.02 0.87 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.06 6.01 -2.39 -0.01 1.05 16 28 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.08 0.69 6.42 -2.39 -0.02 0.67 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 4.73 8.14 -2.39 -0.02 4.71 16 37 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 38 H -0.02 -1.22 7.96 -2.39 -0.02 -1.24 16 39 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 40 H 0.25 17.11 7.22 -92.70 -0.67 16.44 16 Total: -1.00 -81.88 326.46 7.01 -74.87 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.11 Total: 8.89 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.38 Total: -17.65 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.29 Total: -61.01 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: 0.17 Total: -58.17 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -81.88 7.01 -74.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840576267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.912 kcal (2) G-P(sol) polarization free energy of solvation -81.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds