Wall clock time and date at job start Mon Mar 30 2020 07:10:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52991 * 109.78284 * 2 1
4 4 C 1.53229 * 109.62691 * 239.51925 * 2 1 3
5 5 C 1.52955 * 109.40726 * 294.91910 * 4 2 1
6 6 C 1.52960 * 109.81519 * 296.39683 * 5 4 2
7 7 C 1.53230 * 109.40553 * 63.60114 * 6 5 4
8 8 H 1.08996 * 109.78320 * 65.17376 * 7 6 5
9 9 O 1.45195 * 109.62751 * 185.65902 * 7 6 5
10 10 C 1.34232 * 116.99712 * 209.04352 * 9 7 6
11 11 O 1.20823 * 120.00262 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99762 * 180.02562 * 10 9 7
13 13 C 1.53004 * 109.47211 * 180.02562 * 12 10 9
14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 10
15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12
16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12
17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13
18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13
19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14
20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14
21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14
22 22 C 1.51269 * 108.53538 * 305.37433 * 7 6 5
23 23 O 1.20763 * 120.85133 * 231.37203 * 22 7 6
24 24 H 1.09005 * 109.47382 * 299.52069 * 1 2 3
25 25 H 1.09001 * 109.47257 * 59.52355 * 1 2 3
26 26 H 1.09007 * 109.47266 * 179.52406 * 1 2 3
27 27 H 1.08997 * 109.47355 * 180.47549 * 3 2 1
28 28 H 1.09000 * 109.47288 * 300.48130 * 3 2 1
29 29 H 1.09005 * 109.47083 * 60.47626 * 3 2 1
30 30 H 1.09006 * 109.48079 * 54.89446 * 4 2 1
31 31 H 1.08989 * 109.48349 * 174.93444 * 4 2 1
32 32 H 1.08998 * 109.41854 * 56.50446 * 5 4 2
33 33 H 1.09001 * 109.41608 * 176.29028 * 5 4 2
34 34 H 1.09000 * 109.48141 * 303.62065 * 6 5 4
35 35 H 1.09006 * 109.48414 * 183.57551 * 6 5 4
36 36 H 1.09000 * 109.47827 * 59.99656 * 12 10 9
37 37 H 1.09007 * 109.47098 * 299.99379 * 12 10 9
38 38 H 1.09000 * 109.47211 * 59.99027 * 13 12 10
39 39 H 1.09007 * 109.46376 * 299.99569 * 13 12 10
40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0478 1.4396 0.0000
4 6 2.0446 -0.7321 -1.2438
5 6 1.6428 -2.2060 -1.1687
6 6 2.3206 -2.8677 0.0324
7 6 1.8164 -2.2161 1.3243
8 1 0.7533 -2.4209 1.4502
9 8 2.5529 -2.7463 2.4577
10 6 1.9131 -2.7826 3.6371
11 8 0.7755 -2.3840 3.7198
12 6 2.6141 -3.3193 4.8584
13 6 1.6698 -3.2500 6.0603
14 6 2.3706 -3.7873 7.2814
15 1 3.3877 -4.1431 7.2076
16 6 1.7113 -3.8305 8.4915
17 7 0.4727 -3.3975 8.5814
18 14 2.5773 -4.5038 10.0035
19 1 3.2773 -3.3986 10.7063
20 1 1.5775 -5.1154 10.9154
21 1 3.5656 -5.5325 9.5909
22 6 2.0380 -0.7228 1.2280
23 8 2.6064 -0.1230 2.1086
24 1 -0.3634 0.5064 0.8943
25 1 -0.3634 0.5212 -0.8857
26 1 -0.3634 -1.0277 -0.0085
27 1 3.1377 1.4337 -0.0085
28 1 1.6802 1.9580 -0.8856
29 1 1.6942 1.9529 0.8943
30 1 1.6101 -0.2819 -2.1364
31 1 3.1308 -0.6532 -1.2886
32 1 0.5608 -2.2816 -1.0611
33 1 1.9511 -2.7127 -2.0832
34 1 3.4003 -2.7382 -0.0427
35 1 2.0817 -3.9311 0.0444
36 1 3.5031 -2.7215 5.0594
37 1 2.9047 -4.3554 4.6846
38 1 0.7810 -3.8481 5.8591
39 1 1.3788 -2.2140 6.2343
40 1 0.0088 -3.4282 9.4326
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840576271.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:10:46
Heat of formation + Delta-G solvation = -154.304427 kcal
Electronic energy + Delta-G solvation = -20971.036863 eV
Core-core repulsion = 17749.923379 eV
Total energy + Delta-G solvation = -3221.113484 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.01517 -39.42064 -37.03554 -36.16156 -33.56899 -33.33927 -31.13511 -29.29288
-27.58337 -26.19782 -25.79674 -22.99089 -21.78026 -21.55184 -19.75928 -18.56907
-17.42135 -16.73034 -16.42035 -15.93312 -15.56321 -14.99628 -14.91415 -14.46266
-14.23447 -13.95000 -13.56971 -13.09555 -12.81230 -12.69913 -12.48514 -12.31760
-12.23199 -12.04831 -11.85081 -11.63817 -11.38738 -11.16382 -11.04170 -10.92316
-10.77387 -10.74912 -10.61196 -10.02595 -9.91019 -9.53749 -9.23484 -9.14707
-8.35215 -5.99026 -4.03802 1.85718 2.79319 2.96563 3.33760 3.39629
3.42762 3.78377 4.29826 4.38495 4.45915 4.48333 4.61943 4.78899
4.89658 5.03356 5.08439 5.28159 5.34991 5.36376 5.40152 5.51129
5.54397 5.57824 5.63079 5.65139 5.73193 5.83748 5.85196 5.99364
6.07073 6.15506 6.23132 6.63406 6.93238 7.40594 7.68976 7.76518
8.00649 8.26498 8.42099 9.03128 9.60060 11.12102
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.038145 B = 0.003752 C = 0.003650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.871796 B = 7460.218934 C = 7669.301463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.108 4.108
3 C -0.134 4.134
4 C -0.108 4.108
5 C -0.124 4.124
6 C -0.109 4.109
7 C 0.037 3.963
8 H 0.113 0.887
9 O -0.346 6.346
10 C 0.460 3.540
11 O -0.505 6.505
12 C -0.102 4.102
13 C 0.033 3.967
14 C -0.528 4.528
15 H 0.059 0.941
16 C 0.059 3.941
17 N -0.890 5.890
18 Si 0.896 3.104
19 H -0.280 1.280
20 H -0.286 1.286
21 H -0.273 1.273
22 C 0.352 3.648
23 O -0.427 6.427
24 H 0.063 0.937
25 H 0.070 0.930
26 H 0.066 0.934
27 H 0.059 0.941
28 H 0.063 0.937
29 H 0.064 0.936
30 H 0.078 0.922
31 H 0.070 0.930
32 H 0.075 0.925
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.084 0.916
36 H 0.094 0.906
37 H 0.093 0.907
38 H 0.026 0.974
39 H 0.026 0.974
40 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.206 4.155 -23.470 23.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.109 4.109
3 C -0.192 4.192
4 C -0.145 4.145
5 C -0.162 4.162
6 C -0.147 4.147
7 C -0.019 4.019
8 H 0.131 0.869
9 O -0.264 6.264
10 C 0.304 3.696
11 O -0.391 6.391
12 C -0.139 4.139
13 C -0.004 4.004
14 C -0.566 4.566
15 H 0.077 0.923
16 C -0.143 4.143
17 N -0.528 5.528
18 Si 0.724 3.276
19 H -0.206 1.206
20 H -0.212 1.212
21 H -0.198 1.198
22 C 0.224 3.776
23 O -0.297 6.297
24 H 0.082 0.918
25 H 0.089 0.911
26 H 0.085 0.915
27 H 0.078 0.922
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.097 0.903
31 H 0.089 0.911
32 H 0.093 0.907
33 H 0.099 0.901
34 H 0.098 0.902
35 H 0.103 0.897
36 H 0.112 0.888
37 H 0.111 0.889
38 H 0.044 0.956
39 H 0.044 0.956
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.013 4.638 -22.853 23.405
hybrid contribution 0.207 -0.301 0.863 0.937
sum 2.220 4.337 -21.990 22.523
Atomic orbital electron populations
1.21866 0.91811 1.03018 1.03093 1.21337 0.97933 0.96952 0.94684
1.21708 1.01449 0.93538 1.02465 1.21698 1.01536 0.94916 0.96357
1.21621 1.01491 0.95258 0.97782 1.21608 1.01915 1.00709 0.90428
1.23251 0.99431 0.92705 0.86539 0.86913 1.86682 1.46263 1.75538
1.17903 1.24851 0.85933 0.74722 0.84136 1.90607 1.19366 1.44360
1.84816 1.21773 1.01281 1.01492 0.89386 1.19022 0.93735 0.98702
0.88915 1.21157 0.99654 1.42319 0.93467 0.92283 1.25016 0.94862
0.95395 0.99034 1.69995 1.10806 1.46484 1.25553 0.86537 0.79268
0.79164 0.82677 1.20591 1.21189 1.19776 1.25221 0.75376 0.90609
0.86407 1.90425 1.30800 1.69673 1.38761 0.91809 0.91106 0.91533
0.92151 0.91785 0.91724 0.90290 0.91117 0.90672 0.90135 0.90199
0.89714 0.88820 0.88915 0.95589 0.95575 0.92868
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.26 8.20 37.16 0.30 -0.95 16
2 C -0.11 -1.09 0.77 -155.27 -0.12 -1.21 16
3 C -0.13 -1.31 7.90 37.15 0.29 -1.02 16
4 C -0.11 -0.77 4.71 -26.64 -0.13 -0.89 16
5 C -0.12 -0.84 5.65 -26.77 -0.15 -0.99 16
6 C -0.11 -1.04 5.61 -26.63 -0.15 -1.19 16
7 C 0.04 0.53 2.45 -27.49 -0.07 0.46 16
8 H 0.11 1.63 6.86 -51.93 -0.36 1.27 16
9 O -0.35 -6.19 9.54 -45.68 -0.44 -6.63 16
10 C 0.46 9.74 7.80 36.01 0.28 10.02 16
11 O -0.51 -12.03 15.21 -18.75 -0.29 -12.31 16
12 C -0.10 -2.22 5.75 -27.88 -0.16 -2.38 16
13 C 0.03 0.91 4.26 -27.88 -0.12 0.80 16
14 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16
15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16
16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
17 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16
18 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16
19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
22 C 0.35 5.14 5.85 -28.47 -0.17 4.97 16
23 O -0.43 -8.02 16.23 -12.85 -0.21 -8.23 16
24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
26 H 0.07 0.56 5.98 -51.93 -0.31 0.25 16
27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16
30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.07 0.51 8.14 -51.94 -0.42 0.09 16
32 H 0.07 0.47 6.40 -51.93 -0.33 0.14 16
33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16
37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16
38 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16
39 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16
40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
LS Contribution 327.72 15.07 4.94 4.94
Total: -1.00 -34.76 327.72 -7.32 -42.07
By element:
Atomic # 1 Polarization: 2.80 SS G_CDS: -6.45 Total: -3.65 kcal
Atomic # 6 Polarization: -5.64 SS G_CDS: -0.59 Total: -6.23 kcal
Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal
Atomic # 8 Polarization: -26.23 SS G_CDS: -0.93 Total: -27.16 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -34.76 -7.32 -42.07 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840576271.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -112.231 kcal
(2) G-P(sol) polarization free energy of solvation -34.758 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds