Wall clock time and date at job start Mon Mar 30 2020 07:10:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52991 * 109.78284 * 2 1
4 4 C 1.53229 * 109.62691 * 239.51925 * 2 1 3
5 5 C 1.52955 * 109.40726 * 294.91910 * 4 2 1
6 6 C 1.52960 * 109.81519 * 296.39683 * 5 4 2
7 7 C 1.53230 * 109.40553 * 63.60114 * 6 5 4
8 8 H 1.08996 * 109.78320 * 65.17376 * 7 6 5
9 9 O 1.45195 * 109.62751 * 185.65902 * 7 6 5
10 10 C 1.34232 * 116.99712 * 209.04352 * 9 7 6
11 11 O 1.20823 * 120.00262 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99762 * 180.02562 * 10 9 7
13 13 C 1.53004 * 109.47211 * 180.02562 * 12 10 9
14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 10
15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12
16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12
17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13
18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13
19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14
20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14
21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14
22 22 C 1.51269 * 108.53538 * 305.37433 * 7 6 5
23 23 O 1.20763 * 120.85133 * 231.37203 * 22 7 6
24 24 H 1.09005 * 109.47382 * 299.52069 * 1 2 3
25 25 H 1.09001 * 109.47257 * 59.52355 * 1 2 3
26 26 H 1.09007 * 109.47266 * 179.52406 * 1 2 3
27 27 H 1.08997 * 109.47355 * 180.47549 * 3 2 1
28 28 H 1.09000 * 109.47288 * 300.48130 * 3 2 1
29 29 H 1.09005 * 109.47083 * 60.47626 * 3 2 1
30 30 H 1.09006 * 109.48079 * 54.89446 * 4 2 1
31 31 H 1.08989 * 109.48349 * 174.93444 * 4 2 1
32 32 H 1.08998 * 109.41854 * 56.50446 * 5 4 2
33 33 H 1.09001 * 109.41608 * 176.29028 * 5 4 2
34 34 H 1.09000 * 109.48141 * 303.62065 * 6 5 4
35 35 H 1.09006 * 109.48414 * 183.57551 * 6 5 4
36 36 H 1.09000 * 109.47827 * 59.99656 * 12 10 9
37 37 H 1.09007 * 109.47098 * 299.99379 * 12 10 9
38 38 H 1.09000 * 109.47211 * 59.99027 * 13 12 10
39 39 H 1.09007 * 109.46376 * 299.99569 * 13 12 10
40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0478 1.4396 0.0000
4 6 2.0446 -0.7321 -1.2438
5 6 1.6428 -2.2060 -1.1687
6 6 2.3206 -2.8677 0.0324
7 6 1.8164 -2.2161 1.3243
8 1 0.7533 -2.4209 1.4502
9 8 2.5529 -2.7463 2.4577
10 6 1.9131 -2.7826 3.6371
11 8 0.7755 -2.3840 3.7198
12 6 2.6141 -3.3193 4.8584
13 6 1.6698 -3.2500 6.0603
14 6 2.3706 -3.7873 7.2814
15 1 3.3877 -4.1431 7.2076
16 6 1.7113 -3.8305 8.4915
17 7 0.4727 -3.3975 8.5814
18 14 2.5773 -4.5038 10.0035
19 1 3.2773 -3.3986 10.7063
20 1 1.5775 -5.1154 10.9154
21 1 3.5656 -5.5325 9.5909
22 6 2.0380 -0.7228 1.2280
23 8 2.6064 -0.1230 2.1086
24 1 -0.3634 0.5064 0.8943
25 1 -0.3634 0.5212 -0.8857
26 1 -0.3634 -1.0277 -0.0085
27 1 3.1377 1.4337 -0.0085
28 1 1.6802 1.9580 -0.8856
29 1 1.6942 1.9529 0.8943
30 1 1.6101 -0.2819 -2.1364
31 1 3.1308 -0.6532 -1.2886
32 1 0.5608 -2.2816 -1.0611
33 1 1.9511 -2.7127 -2.0832
34 1 3.4003 -2.7382 -0.0427
35 1 2.0817 -3.9311 0.0444
36 1 3.5031 -2.7215 5.0594
37 1 2.9047 -4.3554 4.6846
38 1 0.7810 -3.8481 5.8591
39 1 1.3788 -2.2140 6.2343
40 1 0.0088 -3.4282 9.4326
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000840576271.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:10:45
Heat of formation + Delta-G solvation = -174.895321 kcal
Electronic energy + Delta-G solvation = -20971.929751 eV
Core-core repulsion = 17749.923379 eV
Total energy + Delta-G solvation = -3222.006372 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.25652 -40.85765 -38.06503 -37.66076 -35.70312 -34.24541 -33.16917 -30.27638
-28.35564 -28.00571 -26.82332 -24.65864 -23.00991 -22.50649 -21.45113 -19.58163
-19.16673 -18.34027 -17.85052 -17.39032 -16.74508 -16.50974 -16.34559 -16.07124
-15.19540 -14.90475 -14.66387 -14.45358 -14.33145 -14.20770 -13.56414 -13.42428
-13.25689 -13.20581 -12.99954 -12.86697 -12.72570 -12.57378 -12.51680 -12.21123
-12.11146 -12.06595 -11.80667 -11.58310 -11.42262 -11.42007 -11.26814 -10.61291
-10.33708 -8.22916 -6.37562 0.71857 1.11756 1.40817 1.44265 1.53470
1.57593 2.40857 2.71735 3.10608 3.48721 3.58670 3.72067 3.74010
3.85354 3.96007 4.20857 4.23141 4.30810 4.36424 4.38884 4.60139
4.65688 4.73652 4.79812 4.85120 4.90183 4.95865 4.99933 5.09474
5.17771 5.18252 5.23765 5.28541 5.41187 5.46547 5.48314 5.75797
6.08663 6.27176 6.69201 6.80377 7.32846 8.90054
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.038145 B = 0.003752 C = 0.003650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.871796 B = 7460.218934 C = 7669.301463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.104 4.104
3 C -0.134 4.134
4 C -0.103 4.103
5 C -0.119 4.119
6 C -0.103 4.103
7 C 0.021 3.979
8 H 0.108 0.892
9 O -0.343 6.343
10 C 0.465 3.535
11 O -0.542 6.542
12 C -0.095 4.095
13 C 0.041 3.959
14 C -0.547 4.547
15 H 0.077 0.923
16 C -0.004 4.004
17 N -0.936 5.936
18 Si 0.977 3.023
19 H -0.273 1.273
20 H -0.283 1.283
21 H -0.254 1.254
22 C 0.345 3.655
23 O -0.483 6.483
24 H 0.037 0.963
25 H 0.104 0.896
26 H 0.072 0.928
27 H 0.053 0.947
28 H 0.097 0.903
29 H 0.037 0.963
30 H 0.112 0.888
31 H 0.072 0.928
32 H 0.083 0.917
33 H 0.113 0.887
34 H 0.082 0.918
35 H 0.096 0.904
36 H 0.107 0.893
37 H 0.122 0.878
38 H -0.006 1.006
39 H -0.016 1.016
40 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.432 3.186 -25.852 26.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.105 4.105
3 C -0.191 4.191
4 C -0.140 4.140
5 C -0.156 4.156
6 C -0.141 4.141
7 C -0.034 4.034
8 H 0.126 0.874
9 O -0.260 6.260
10 C 0.310 3.690
11 O -0.432 6.432
12 C -0.132 4.132
13 C 0.003 3.997
14 C -0.585 4.585
15 H 0.096 0.904
16 C -0.201 4.201
17 N -0.576 5.576
18 Si 0.801 3.199
19 H -0.198 1.198
20 H -0.208 1.208
21 H -0.178 1.178
22 C 0.221 3.779
23 O -0.357 6.357
24 H 0.056 0.944
25 H 0.123 0.877
26 H 0.091 0.909
27 H 0.072 0.928
28 H 0.116 0.884
29 H 0.056 0.944
30 H 0.130 0.870
31 H 0.091 0.909
32 H 0.101 0.899
33 H 0.131 0.869
34 H 0.101 0.899
35 H 0.115 0.885
36 H 0.126 0.874
37 H 0.140 0.860
38 H 0.013 0.987
39 H 0.002 0.998
40 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 3.261 3.654 -25.288 25.758
hybrid contribution -0.213 0.040 1.515 1.530
sum 3.048 3.694 -23.773 24.251
Atomic orbital electron populations
1.21925 0.90805 1.03620 1.03446 1.21448 0.98535 0.96836 0.93676
1.21730 1.01072 0.93558 1.02739 1.21767 1.01834 0.94944 0.95487
1.21687 1.01733 0.94872 0.97329 1.21764 1.02285 1.01339 0.88709
1.23896 0.99194 0.93440 0.86920 0.87397 1.86617 1.46275 1.75276
1.17822 1.24588 0.85237 0.73987 0.85157 1.90590 1.20927 1.46043
1.85617 1.21536 1.00079 1.03676 0.87893 1.18784 0.93892 0.95328
0.91649 1.21626 1.00530 1.42253 0.94049 0.90449 1.26128 0.95539
0.95459 1.03020 1.70163 1.12859 1.47831 1.26704 0.85269 0.78179
0.78796 0.77696 1.19826 1.20832 1.17802 1.26075 0.73732 0.90888
0.87200 1.90405 1.33699 1.70572 1.40975 0.94425 0.87723 0.90927
0.92825 0.88440 0.94372 0.86961 0.90946 0.89869 0.86874 0.89946
0.88498 0.87450 0.86023 0.98744 0.99807 0.92654
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 8.20 71.98 0.59 -1.71 16
2 C -0.10 -1.94 0.77 -52.67 -0.04 -1.99 16
3 C -0.13 -2.50 7.90 71.98 0.57 -1.93 16
4 C -0.10 -1.09 4.71 30.66 0.14 -0.94 16
5 C -0.12 -1.13 5.65 30.57 0.17 -0.96 16
6 C -0.10 -1.74 5.61 30.66 0.17 -1.57 16
7 C 0.02 0.60 2.45 30.11 0.07 0.67 16
8 H 0.11 3.18 6.86 -2.39 -0.02 3.16 16
9 O -0.34 -12.43 9.54 -45.29 -0.43 -12.86 16
10 C 0.46 20.41 7.80 71.24 0.56 20.96 16
11 O -0.54 -27.32 15.21 21.97 0.33 -26.99 16
12 C -0.09 -4.20 5.75 29.85 0.17 -4.03 16
13 C 0.04 2.34 4.26 29.85 0.13 2.46 16
14 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16
15 H 0.08 4.12 7.74 -2.91 -0.02 4.10 16
16 C 0.00 -0.21 5.46 84.65 0.46 0.25 16
17 N -0.94 -59.67 13.29 21.45 0.28 -59.38 16
18 Si 0.98 44.82 29.54 68.60 2.03 46.84 16
19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
21 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16
22 C 0.35 10.25 5.85 29.47 0.17 10.43 16
23 O -0.48 -19.15 16.23 16.56 0.27 -18.88 16
24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16
25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
26 H 0.07 1.09 5.98 -2.38 -0.01 1.07 16
27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.04 0.90 8.04 -2.38 -0.02 0.88 16
30 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16
31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
32 H 0.08 0.71 6.40 -2.39 -0.02 0.70 16
33 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16
34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16
36 H 0.11 4.46 8.14 -2.39 -0.02 4.44 16
37 H 0.12 4.67 8.14 -2.38 -0.02 4.65 16
38 H -0.01 -0.37 8.10 -2.39 -0.02 -0.39 16
39 H -0.02 -1.07 8.10 -2.38 -0.02 -1.09 16
40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16
Total: -1.00 -80.74 327.72 6.90 -73.84
By element:
Atomic # 1 Polarization: 6.34 SS G_CDS: 1.01 Total: 7.36 kcal
Atomic # 6 Polarization: -13.33 SS G_CDS: 3.40 Total: -9.93 kcal
Atomic # 7 Polarization: -59.67 SS G_CDS: 0.28 Total: -59.38 kcal
Atomic # 8 Polarization: -58.90 SS G_CDS: 0.17 Total: -58.73 kcal
Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal
Total: -80.74 6.90 -73.84 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840576271.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.054 kcal
(2) G-P(sol) polarization free energy of solvation -80.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds