Wall clock time and date at job start Mon Mar 30 2020 07:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99842 * 2 1 4 4 C 1.50703 * 115.56140 * 278.12124 * 3 2 1 5 5 O 1.20826 * 120.00101 * 170.05777 * 4 3 2 6 6 O 1.34233 * 120.00105 * 350.05465 * 4 3 2 7 7 C 1.45192 * 117.00061 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47177 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.41282 * 55.13910 * 8 7 6 10 10 C 1.52958 * 109.41472 * 175.00165 * 8 7 6 11 11 C 1.53228 * 109.40537 * 183.70558 * 10 8 7 12 12 C 1.51273 * 108.53371 * 305.36902 * 11 10 8 13 13 C 1.37872 * 120.84915 * 231.37117 * 12 11 10 14 14 N 1.31520 * 120.00003 * 359.97438 * 13 12 11 15 15 Si 1.86801 * 120.00053 * 179.97438 * 13 12 11 16 16 H 1.48500 * 109.47110 * 90.00157 * 15 13 12 17 17 H 1.48505 * 109.47086 * 209.99800 * 15 13 12 18 18 H 1.48499 * 109.47293 * 329.99942 * 15 13 12 19 19 C 1.51262 * 118.30099 * 51.34746 * 12 11 10 20 20 C 1.52958 * 109.41036 * 295.35009 * 8 7 6 21 21 C 1.53000 * 117.49924 * 63.81075 * 3 2 1 22 22 C 1.53000 * 60.00109 * 107.48874 * 21 3 2 23 23 H 1.08993 * 109.47488 * 294.83052 * 1 2 3 24 24 H 1.08999 * 109.47002 * 54.83934 * 1 2 3 25 25 H 1.09006 * 109.46730 * 174.83421 * 1 2 3 26 26 H 1.09003 * 109.47180 * 300.00120 * 7 6 4 27 27 H 1.08997 * 109.47441 * 59.99892 * 7 6 4 28 28 H 1.09007 * 109.47775 * 303.67832 * 10 8 7 29 29 H 1.08999 * 109.48491 * 63.71866 * 10 8 7 30 30 H 1.09001 * 109.62569 * 65.07780 * 11 10 8 31 31 H 1.08998 * 109.62906 * 185.65891 * 11 10 8 32 32 H 0.96998 * 119.99992 * 180.02562 * 14 13 12 33 33 H 1.09004 * 109.62996 * 68.36399 * 19 12 11 34 34 H 1.09002 * 109.62988 * 188.74826 * 19 12 11 35 35 H 1.09004 * 109.48557 * 296.27779 * 20 8 7 36 36 H 1.09000 * 109.48117 * 56.31655 * 20 8 7 37 37 H 1.08992 * 117.49826 * 359.97438 * 21 3 2 38 38 H 1.09004 * 117.49584 * 214.97743 * 21 3 2 39 39 H 1.09003 * 117.49577 * 107.48801 * 22 21 3 40 40 H 1.09002 * 117.49763 * 252.48642 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.0992 1.9776 -1.3459 5 8 2.4070 3.1436 -1.4197 6 8 1.8366 1.2808 -2.4628 7 6 1.9425 1.9925 -3.7239 8 6 1.6087 1.0420 -4.8755 9 1 0.6260 0.6011 -4.7081 10 6 1.5987 1.8216 -6.1915 11 6 1.1742 0.8901 -7.3317 12 6 2.0844 -0.3181 -7.3298 13 6 2.7252 -0.7223 -8.4817 14 7 2.5483 -0.0552 -9.6013 15 14 3.8446 -2.2175 -8.4523 16 1 3.0526 -3.4349 -8.7619 17 1 4.9167 -2.0532 -9.4666 18 1 4.4543 -2.3530 -7.1050 19 6 2.2740 -1.0711 -6.0317 20 6 2.6586 -0.0685 -4.9386 21 6 1.7503 2.1944 1.2178 22 6 3.1341 1.5784 1.0017 23 1 -0.3634 0.4315 0.9326 24 1 -0.3633 0.5918 -0.8402 25 1 -0.3633 -1.0236 -0.0925 26 1 1.2433 2.8287 -3.7291 27 1 2.9586 2.3679 -3.8450 28 1 0.8945 2.6503 -6.1177 29 1 2.5974 2.2096 -6.3917 30 1 0.1429 0.5718 -7.1796 31 1 1.2622 1.4133 -8.2839 32 1 2.9988 -0.3398 -10.4118 33 1 1.3444 -1.5710 -5.7593 34 1 3.0663 -1.8104 -6.1496 35 1 3.6323 0.3642 -5.1685 36 1 2.7056 -0.5794 -3.9769 37 1 1.1358 1.7837 2.0188 38 1 1.6438 3.2655 1.0455 39 1 3.9378 2.2442 0.6872 40 1 3.4302 0.7624 1.6610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842800431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:09 Heat of formation + Delta-G solvation = -118.570632 kcal Electronic energy + Delta-G solvation = -20996.498278 eV Core-core repulsion = 17776.934328 eV Total energy + Delta-G solvation = -3219.563950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75748 -38.68491 -37.32653 -36.14587 -34.72537 -32.58200 -29.85413 -29.22314 -27.17050 -25.86297 -24.05012 -22.89629 -21.57782 -21.06417 -20.24369 -19.16491 -18.40659 -16.84395 -16.41038 -16.00447 -15.90802 -15.15182 -14.70304 -14.42760 -14.22433 -13.63537 -13.57825 -13.02980 -12.76083 -12.59802 -12.07391 -11.98688 -11.91094 -11.73095 -11.42709 -11.20637 -11.00895 -10.83466 -10.75264 -10.59925 -10.46840 -10.22275 -9.99184 -9.83361 -9.80189 -9.37796 -8.81350 -8.55695 -8.41544 -6.06538 -3.96747 1.95437 2.59466 3.05213 3.30079 3.38270 3.39803 3.59643 4.27317 4.41732 4.47795 4.54574 5.06957 5.14370 5.16828 5.21773 5.25449 5.35047 5.40734 5.44221 5.55240 5.67297 5.69369 6.00171 6.06796 6.34044 6.53821 6.61538 6.70752 6.73691 6.82927 6.97525 7.06776 7.15788 7.22539 7.47936 7.70001 7.75713 7.81509 7.86723 8.43431 9.00865 9.58646 11.03206 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.004299 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.333837 B = 6510.953856 C = 6824.588240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.329 6.329 3 C 0.023 3.977 4 C 0.481 3.519 5 O -0.510 6.510 6 O -0.335 6.335 7 C 0.069 3.931 8 C -0.071 4.071 9 H 0.069 0.931 10 C -0.101 4.101 11 C 0.011 3.989 12 C -0.485 4.485 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.264 1.264 19 C -0.021 4.021 20 C -0.101 4.101 21 C -0.164 4.164 22 C -0.122 4.122 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.058 0.942 32 H 0.263 0.737 33 H 0.016 0.984 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 2.765 19.796 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.246 6.246 3 C -0.020 4.020 4 C 0.324 3.676 5 O -0.400 6.400 6 O -0.250 6.250 7 C -0.004 4.004 8 C -0.089 4.089 9 H 0.088 0.912 10 C -0.139 4.139 11 C -0.026 4.026 12 C -0.504 4.504 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.189 1.189 19 C -0.059 4.059 20 C -0.139 4.139 21 C -0.201 4.201 22 C -0.159 4.159 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.046 2.937 19.508 19.833 hybrid contribution 0.445 -0.465 -0.226 0.682 sum -1.601 2.473 19.281 19.505 Atomic orbital electron populations 1.22893 0.80241 1.03538 1.00335 1.88002 1.20427 1.21939 1.94262 1.21311 1.06542 0.87363 0.86768 1.22792 0.73536 0.84928 0.86323 1.90662 1.44701 1.17064 1.87537 1.86575 1.79108 1.44110 1.15211 1.23570 1.01884 0.95403 0.79574 1.21114 1.00422 0.95729 0.91678 0.91223 1.21637 1.00172 0.97289 0.94836 1.19367 0.94593 0.94090 0.94578 1.20077 1.26753 1.11238 0.92354 1.24852 0.96303 0.96555 0.95096 1.69841 1.43521 1.39685 1.00066 0.86688 0.80894 0.83360 0.77593 1.20448 1.21714 1.18905 1.19823 0.96686 0.94847 0.94524 1.21562 0.97262 0.96795 0.98248 1.23621 0.99727 1.00185 0.96612 1.23372 0.92236 1.02684 0.97630 0.93837 0.93269 0.88727 0.91848 0.91407 0.94974 0.92884 0.97743 0.92330 0.92674 0.96535 0.94847 0.93282 0.94158 0.86729 0.86683 0.86604 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.79 101.05 1.09 1.35 16 2 O -0.33 -4.22 10.65 -46.39 -0.49 -4.71 16 3 C 0.02 0.28 2.46 -91.77 -0.23 0.05 16 4 C 0.48 7.49 7.59 36.01 0.27 7.77 16 5 O -0.51 -8.68 16.17 -18.75 -0.30 -8.98 16 6 O -0.33 -5.76 9.45 -43.80 -0.41 -6.17 16 7 C 0.07 1.20 4.84 37.16 0.18 1.38 16 8 C -0.07 -1.39 2.33 -90.66 -0.21 -1.60 16 9 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 10 C -0.10 -2.15 5.21 -26.64 -0.14 -2.29 16 11 C 0.01 0.28 5.97 -27.48 -0.16 0.11 16 12 C -0.49 -12.92 5.51 -98.93 -0.55 -13.46 16 13 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 14 N -0.89 -25.95 12.73 55.43 0.71 -25.24 16 15 Si 0.89 21.36 27.53 -169.99 -4.68 16.68 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -6.17 6.11 56.52 0.35 -5.83 16 19 C -0.02 -0.51 5.59 -27.49 -0.15 -0.66 16 20 C -0.10 -2.14 5.15 -26.63 -0.14 -2.27 16 21 C -0.16 -1.44 9.49 -26.73 -0.25 -1.69 16 22 C -0.12 -1.13 10.09 -26.73 -0.27 -1.40 16 23 H 0.04 0.33 7.60 -51.93 -0.39 -0.06 16 24 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 27 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.79 4.59 -51.93 -0.24 0.56 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.80 7.71 -51.93 -0.40 0.40 16 37 H 0.11 0.75 7.82 -51.93 -0.41 0.35 16 38 H 0.11 1.02 7.88 -51.93 -0.41 0.61 16 39 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -30.43 325.96 -7.40 -37.83 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.48 Total: -3.55 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.65 Total: -10.77 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.71 Total: -25.24 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.21 Total: -19.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.68 Total: 16.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.43 -7.40 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842800431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.736 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds