Wall clock time and date at job start Mon Mar 30 2020 07:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99842 * 2 1 4 4 C 1.50703 * 115.56140 * 278.12124 * 3 2 1 5 5 O 1.20826 * 120.00101 * 170.05777 * 4 3 2 6 6 O 1.34233 * 120.00105 * 350.05465 * 4 3 2 7 7 C 1.45192 * 117.00061 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47177 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.41282 * 55.13910 * 8 7 6 10 10 C 1.52958 * 109.41472 * 175.00165 * 8 7 6 11 11 C 1.53228 * 109.40537 * 183.70558 * 10 8 7 12 12 C 1.51273 * 108.53371 * 305.36902 * 11 10 8 13 13 C 1.37872 * 120.84915 * 231.37117 * 12 11 10 14 14 N 1.31520 * 120.00003 * 359.97438 * 13 12 11 15 15 Si 1.86801 * 120.00053 * 179.97438 * 13 12 11 16 16 H 1.48500 * 109.47110 * 90.00157 * 15 13 12 17 17 H 1.48505 * 109.47086 * 209.99800 * 15 13 12 18 18 H 1.48499 * 109.47293 * 329.99942 * 15 13 12 19 19 C 1.51262 * 118.30099 * 51.34746 * 12 11 10 20 20 C 1.52958 * 109.41036 * 295.35009 * 8 7 6 21 21 C 1.53000 * 117.49924 * 63.81075 * 3 2 1 22 22 C 1.53000 * 60.00109 * 107.48874 * 21 3 2 23 23 H 1.08993 * 109.47488 * 294.83052 * 1 2 3 24 24 H 1.08999 * 109.47002 * 54.83934 * 1 2 3 25 25 H 1.09006 * 109.46730 * 174.83421 * 1 2 3 26 26 H 1.09003 * 109.47180 * 300.00120 * 7 6 4 27 27 H 1.08997 * 109.47441 * 59.99892 * 7 6 4 28 28 H 1.09007 * 109.47775 * 303.67832 * 10 8 7 29 29 H 1.08999 * 109.48491 * 63.71866 * 10 8 7 30 30 H 1.09001 * 109.62569 * 65.07780 * 11 10 8 31 31 H 1.08998 * 109.62906 * 185.65891 * 11 10 8 32 32 H 0.96998 * 119.99992 * 180.02562 * 14 13 12 33 33 H 1.09004 * 109.62996 * 68.36399 * 19 12 11 34 34 H 1.09002 * 109.62988 * 188.74826 * 19 12 11 35 35 H 1.09004 * 109.48557 * 296.27779 * 20 8 7 36 36 H 1.09000 * 109.48117 * 56.31655 * 20 8 7 37 37 H 1.08992 * 117.49826 * 359.97438 * 21 3 2 38 38 H 1.09004 * 117.49584 * 214.97743 * 21 3 2 39 39 H 1.09003 * 117.49577 * 107.48801 * 22 21 3 40 40 H 1.09002 * 117.49763 * 252.48642 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.0992 1.9776 -1.3459 5 8 2.4070 3.1436 -1.4197 6 8 1.8366 1.2808 -2.4628 7 6 1.9425 1.9925 -3.7239 8 6 1.6087 1.0420 -4.8755 9 1 0.6260 0.6011 -4.7081 10 6 1.5987 1.8216 -6.1915 11 6 1.1742 0.8901 -7.3317 12 6 2.0844 -0.3181 -7.3298 13 6 2.7252 -0.7223 -8.4817 14 7 2.5483 -0.0552 -9.6013 15 14 3.8446 -2.2175 -8.4523 16 1 3.0526 -3.4349 -8.7619 17 1 4.9167 -2.0532 -9.4666 18 1 4.4543 -2.3530 -7.1050 19 6 2.2740 -1.0711 -6.0317 20 6 2.6586 -0.0685 -4.9386 21 6 1.7503 2.1944 1.2178 22 6 3.1341 1.5784 1.0017 23 1 -0.3634 0.4315 0.9326 24 1 -0.3633 0.5918 -0.8402 25 1 -0.3633 -1.0236 -0.0925 26 1 1.2433 2.8287 -3.7291 27 1 2.9586 2.3679 -3.8450 28 1 0.8945 2.6503 -6.1177 29 1 2.5974 2.2096 -6.3917 30 1 0.1429 0.5718 -7.1796 31 1 1.2622 1.4133 -8.2839 32 1 2.9988 -0.3398 -10.4118 33 1 1.3444 -1.5710 -5.7593 34 1 3.0663 -1.8104 -6.1496 35 1 3.6323 0.3642 -5.1685 36 1 2.7056 -0.5794 -3.9769 37 1 1.1358 1.7837 2.0188 38 1 1.6438 3.2655 1.0455 39 1 3.9378 2.2442 0.6872 40 1 3.4302 0.7624 1.6610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842800431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:09 Heat of formation + Delta-G solvation = -135.497370 kcal Electronic energy + Delta-G solvation = -20997.232277 eV Core-core repulsion = 17776.934328 eV Total energy + Delta-G solvation = -3220.297949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.89162 -39.73057 -38.82779 -37.54062 -35.58484 -34.53117 -31.68627 -31.04668 -27.99698 -27.27575 -25.39536 -23.57260 -23.36857 -22.88224 -21.36559 -20.84051 -19.48212 -18.14903 -17.97059 -17.43291 -16.84035 -16.41054 -16.00854 -15.85027 -15.25355 -15.07398 -14.80305 -14.60053 -14.56620 -14.22049 -13.82585 -13.44913 -12.94899 -12.79127 -12.69745 -12.58665 -12.53748 -12.40806 -12.20792 -11.98817 -11.86566 -11.72585 -11.49753 -11.30535 -11.25584 -10.84682 -10.68175 -10.53333 -10.42194 -8.16279 -6.09955 0.85912 1.38504 1.41134 1.47944 1.49537 2.25420 2.41418 2.77995 3.09782 3.45526 3.49288 3.74705 3.84357 3.92707 4.14579 4.36044 4.43443 4.45938 4.48525 4.52791 4.58810 4.69031 4.75485 4.79611 4.85277 4.99066 5.04262 5.04938 5.12976 5.25942 5.28122 5.39139 5.43774 5.59966 5.65495 5.78213 5.86606 5.89605 6.37579 6.61295 6.96561 7.47931 8.94733 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.004299 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.333837 B = 6510.953856 C = 6824.588240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C -0.006 4.006 4 C 0.477 3.523 5 O -0.531 6.531 6 O -0.346 6.346 7 C 0.077 3.923 8 C -0.063 4.063 9 H 0.070 0.930 10 C -0.093 4.093 11 C 0.006 3.994 12 C -0.497 4.497 13 C 0.019 3.981 14 N -0.934 5.934 15 Si 0.939 3.061 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.250 1.250 19 C -0.023 4.023 20 C -0.095 4.095 21 C -0.140 4.140 22 C -0.112 4.112 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.002 0.998 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 2.370 22.776 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.263 6.263 3 C -0.049 4.049 4 C 0.321 3.679 5 O -0.422 6.422 6 O -0.262 6.262 7 C 0.004 3.996 8 C -0.081 4.081 9 H 0.089 0.911 10 C -0.131 4.131 11 C -0.031 4.031 12 C -0.516 4.516 13 C -0.179 4.179 14 N -0.574 5.574 15 Si 0.765 3.235 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.175 1.175 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.177 4.177 22 C -0.149 4.149 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.964 2.535 22.515 22.742 hybrid contribution 0.343 -0.309 -1.115 1.207 sum -1.621 2.226 21.400 21.577 Atomic orbital electron populations 1.23070 0.79197 1.04260 1.01096 1.87979 1.21759 1.22342 1.94221 1.21468 1.09632 0.88044 0.85726 1.23573 0.72547 0.84894 0.86842 1.90643 1.45795 1.17928 1.87818 1.86567 1.79562 1.44554 1.15496 1.23275 1.01986 0.94834 0.79516 1.20927 0.99982 0.95461 0.91776 0.91145 1.21454 1.00076 0.97277 0.94267 1.19341 0.94471 0.94537 0.94756 1.20689 1.26001 1.11530 0.93415 1.25623 0.98109 0.99176 0.94942 1.69975 1.45163 1.41581 1.00716 0.85830 0.79237 0.80373 0.78028 1.19952 1.21908 1.17487 1.19846 0.96946 0.95261 0.94026 1.21470 0.97291 0.96681 0.97862 1.23774 0.99573 0.99609 0.94745 1.23572 0.92146 1.03086 0.96059 0.91236 0.94733 0.87699 0.90748 0.91670 0.92576 0.93851 0.97953 0.95445 0.92883 0.96087 0.94825 0.93967 0.92667 0.83984 0.86872 0.86746 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.79 113.37 1.22 1.56 16 2 O -0.35 -8.07 10.65 -138.31 -1.47 -9.54 16 3 C -0.01 -0.14 2.46 -11.54 -0.03 -0.17 16 4 C 0.48 14.15 7.59 71.24 0.54 14.69 16 5 O -0.53 -17.40 16.17 21.96 0.36 -17.04 16 6 O -0.35 -11.41 9.45 -47.10 -0.45 -11.86 16 7 C 0.08 2.59 4.84 71.98 0.35 2.94 16 8 C -0.06 -2.39 2.33 -10.82 -0.03 -2.42 16 9 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 10 C -0.09 -3.89 5.21 30.66 0.16 -3.73 16 11 C 0.01 0.32 5.97 30.11 0.18 0.50 16 12 C -0.50 -26.60 5.51 -16.17 -0.09 -26.69 16 13 C 0.02 1.07 5.46 84.65 0.46 1.53 16 14 N -0.93 -55.76 12.73 21.45 0.27 -55.48 16 15 Si 0.94 43.91 27.53 68.60 1.89 45.80 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 18 H -0.25 -11.05 6.11 99.48 0.61 -10.44 16 19 C -0.02 -1.09 5.59 30.10 0.17 -0.92 16 20 C -0.10 -3.90 5.15 30.66 0.16 -3.75 16 21 C -0.14 -1.99 9.49 30.59 0.29 -1.70 16 22 C -0.11 -1.73 10.09 30.60 0.31 -1.42 16 23 H 0.07 0.83 7.60 -2.39 -0.02 0.82 16 24 H 0.03 0.70 8.07 -2.39 -0.02 0.68 16 25 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 27 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 28 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.03 1.53 7.07 -2.39 -0.02 1.52 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.03 1.54 4.59 -2.39 -0.01 1.53 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.05 2.10 7.71 -2.39 -0.02 2.08 16 37 H 0.14 1.23 7.82 -2.39 -0.02 1.21 16 38 H 0.11 1.69 7.88 -2.38 -0.02 1.67 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.78 325.96 5.21 -60.57 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.92 Total: 7.12 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.70 Total: -19.56 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.27 Total: -55.48 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.56 Total: -38.44 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.89 Total: 45.80 kcal Total: -65.78 5.21 -60.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842800431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.928 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds