Wall clock time and date at job start Mon Mar 30 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99715 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99938 * 180.02562 * 12 11 10 15 15 C 1.45200 * 116.99910 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47046 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46960 * 180.02562 * 16 15 14 18 18 H 1.09006 * 109.96792 * 306.26825 * 17 16 15 19 19 C 1.54277 * 109.98288 * 185.00063 * 17 16 15 20 20 C 1.54985 * 103.74695 * 217.52568 * 19 17 16 21 21 C 1.54883 * 102.33533 * 37.08400 * 20 19 17 22 22 C 1.51440 * 109.98489 * 67.57803 * 17 16 15 23 23 O 1.20760 * 126.34488 * 298.96945 * 22 17 16 24 24 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 26 26 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 27 27 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 28 28 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 29 29 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 30 30 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 31 31 H 1.09003 * 109.47092 * 300.00008 * 15 14 12 32 32 H 1.08997 * 109.47224 * 59.99878 * 15 14 12 33 33 H 1.09003 * 109.46823 * 299.99734 * 16 15 14 34 34 H 1.08991 * 109.47414 * 60.00074 * 16 15 14 35 35 H 1.09002 * 110.56796 * 336.09017 * 19 17 16 36 36 H 1.08997 * 110.57364 * 98.80856 * 19 17 16 37 37 H 1.09004 * 110.82788 * 155.29376 * 20 19 17 38 38 H 1.09000 * 110.83118 * 278.67109 * 20 19 17 39 39 H 1.09001 * 110.44600 * 81.11361 * 21 20 19 40 40 H 1.08998 * 110.44324 * 203.63478 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4599 -6.1324 0.0310 13 8 3.6478 -5.9115 0.0294 14 8 2.0125 -7.3979 0.0374 15 6 3.0126 -8.4506 0.0427 16 6 2.3180 -9.8138 0.0490 17 6 3.3718 -10.9231 0.0553 18 1 4.0682 -10.7796 -0.7709 19 6 2.6879 -12.3008 -0.0648 20 6 3.5335 -13.2135 0.8593 21 6 3.8828 -12.2642 2.0322 22 6 4.1209 -10.9179 1.3715 23 8 4.7849 -10.0113 1.8135 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6248 -2.5524 0.9029 26 1 0.6241 -2.5613 -0.8770 27 1 2.8721 -3.6088 -0.8720 28 1 2.8721 -3.5996 0.9080 29 1 0.8541 -5.0399 0.9162 30 1 0.8536 -5.0496 -0.8638 31 1 3.6354 -8.3646 -0.8477 32 1 3.6353 -8.3556 0.9322 33 1 1.6949 -9.9001 0.9392 34 1 1.6956 -9.9086 -0.8407 35 1 1.6575 -12.2488 0.2871 36 1 2.7223 -12.6571 -1.0943 37 1 2.9455 -14.0620 1.2093 38 1 4.4351 -13.5527 0.3493 39 1 3.0503 -12.2024 2.7330 40 1 4.7852 -12.6036 2.5408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:12 Heat of formation + Delta-G solvation = -186.809486 kcal Electronic energy + Delta-G solvation = -19619.330371 eV Core-core repulsion = 16396.807362 eV Total energy + Delta-G solvation = -3222.523009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70730 -40.99919 -38.06900 -37.34881 -36.51318 -34.25872 -33.71426 -29.99067 -28.77234 -27.46067 -25.80772 -23.76555 -22.97829 -21.92855 -21.49957 -20.03814 -19.14402 -18.54742 -18.17138 -17.43460 -17.25006 -16.72056 -16.08826 -15.67122 -15.58011 -15.22738 -15.06354 -14.81092 -14.41178 -14.18126 -13.77595 -13.54492 -13.35965 -13.00937 -12.94267 -12.71442 -12.56635 -12.44234 -12.11124 -12.02843 -12.00484 -11.86330 -11.79393 -11.66250 -11.56815 -11.49800 -10.70781 -10.54942 -10.36556 -8.70477 -6.40333 0.82956 1.06975 1.51118 1.55078 1.60453 1.79243 2.55291 3.06834 3.14091 3.45610 3.47763 3.77283 3.82928 3.92786 3.98448 4.03750 4.07087 4.22365 4.32554 4.35566 4.47214 4.53755 4.66222 4.71216 4.79018 4.82729 4.86411 4.90821 4.91340 5.04249 5.18226 5.22935 5.29260 5.39680 5.41121 5.45854 5.99623 6.17422 6.44093 6.58401 6.63235 7.39527 8.71523 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.055770 B = 0.002533 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.943912 B =11053.599159 C =11326.690209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.119 2.881 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.625 4.625 8 H 0.043 0.957 9 C 0.009 3.991 10 C -0.081 4.081 11 C -0.104 4.104 12 C 0.466 3.534 13 O -0.543 6.543 14 O -0.354 6.354 15 C 0.048 3.952 16 C -0.095 4.095 17 C -0.149 4.149 18 H 0.108 0.892 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.182 4.182 22 C 0.356 3.644 23 O -0.490 6.490 24 H 0.259 0.741 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -31.544 -0.109 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.940 3.060 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.663 4.663 8 H 0.061 0.939 9 C -0.028 4.028 10 C -0.119 4.119 11 C -0.141 4.141 12 C 0.311 3.689 13 O -0.433 6.433 14 O -0.271 6.271 15 C -0.025 4.025 16 C -0.133 4.133 17 C -0.168 4.168 18 H 0.126 0.874 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.219 4.219 22 C 0.234 3.766 23 O -0.366 6.366 24 H 0.068 0.932 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.174 -29.435 0.117 29.606 hybrid contribution 0.561 -1.354 0.107 1.469 sum 3.735 -30.789 0.224 31.016 Atomic orbital electron populations 1.70887 1.07674 1.30081 1.48587 1.27394 0.96714 1.06662 0.92673 0.82910 0.74075 0.71163 0.77855 1.19745 1.19922 1.20305 1.22516 0.94542 0.93804 1.55424 0.93895 1.19182 0.94852 0.93434 0.95284 1.21159 0.97723 0.92089 1.00962 1.21516 0.96909 0.88303 1.07342 1.24253 0.89344 0.84340 0.70997 1.90653 1.20042 1.85744 1.46844 1.86466 1.41324 1.15520 1.83811 1.23435 0.90431 0.86267 1.02394 1.21477 0.97697 0.88254 1.05833 1.22429 0.98432 0.98037 0.97951 0.87391 1.22389 0.99776 0.90098 1.02121 1.22459 1.00994 0.97405 0.94253 1.22979 1.04858 0.93428 1.00673 1.25809 0.74599 0.88016 0.88167 1.90451 1.34492 1.42382 1.69273 0.93162 0.98025 0.97835 0.93428 0.93703 0.86118 0.85766 0.91660 0.92430 0.89746 0.87361 0.89073 0.88574 0.88034 0.90286 0.86334 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.65 21.45 0.29 -58.15 16 2 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 3 Si 1.12 52.02 29.90 68.60 2.05 54.07 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.63 -37.33 9.11 25.60 0.23 -37.09 16 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.01 0.50 4.28 29.85 0.13 0.63 16 10 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16 11 C -0.10 -3.51 5.81 29.85 0.17 -3.33 16 12 C 0.47 16.41 7.96 71.24 0.57 16.98 16 13 O -0.54 -23.15 15.73 21.96 0.35 -22.80 16 14 O -0.35 -10.41 10.22 -51.39 -0.53 -10.93 16 15 C 0.05 1.24 5.27 71.98 0.38 1.62 16 16 C -0.10 -1.44 4.92 30.60 0.15 -1.29 16 17 C -0.15 -1.76 2.87 -10.87 -0.03 -1.79 16 18 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 19 C -0.11 -0.48 6.40 31.71 0.20 -0.27 16 20 C -0.11 -0.43 6.95 31.92 0.22 -0.21 16 21 C -0.18 -1.63 6.72 30.86 0.21 -1.43 16 22 C 0.36 6.17 7.04 29.70 0.21 6.38 16 23 O -0.49 -13.79 16.04 -1.45 -0.02 -13.82 16 24 H 0.26 16.14 7.22 -92.70 -0.67 15.47 16 25 H 0.00 0.08 8.01 -2.38 -0.02 0.06 16 26 H 0.00 0.18 8.00 -2.39 -0.02 0.16 16 27 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 28 H 0.04 2.09 8.10 -2.39 -0.02 2.07 16 29 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.12 3.65 8.14 -2.38 -0.02 3.63 16 31 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 32 H 0.06 1.79 6.13 -2.39 -0.01 1.77 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 0.26 7.85 -2.39 -0.02 0.24 16 36 H 0.10 0.19 8.14 -2.39 -0.02 0.18 16 37 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 38 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -78.24 334.80 6.28 -71.95 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.10 Total: 4.72 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.04 Total: -25.04 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.29 Total: -58.15 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.20 Total: -47.55 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -78.24 6.28 -71.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.858 kcal (2) G-P(sol) polarization free energy of solvation -78.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds