Wall clock time and date at job start Mon Mar 30 2020 07:06:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 119.99579 * 2 1
4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1
5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1
6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3
8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2
11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7
12 12 C 1.50698 * 109.47242 * 179.97438 * 11 10 9
13 13 O 1.20828 * 119.99715 * 0.02562 * 12 11 10
14 14 O 1.34228 * 119.99938 * 180.02562 * 12 11 10
15 15 C 1.45200 * 116.99910 * 180.02562 * 14 12 11
16 16 C 1.53004 * 109.47046 * 180.02562 * 15 14 12
17 17 C 1.53005 * 109.46960 * 180.02562 * 16 15 14
18 18 H 1.09006 * 109.96792 * 306.26825 * 17 16 15
19 19 C 1.54277 * 109.98288 * 185.00063 * 17 16 15
20 20 C 1.54985 * 103.74695 * 217.52568 * 19 17 16
21 21 C 1.54883 * 102.33533 * 37.08400 * 20 19 17
22 22 C 1.51440 * 109.98489 * 67.57803 * 17 16 15
23 23 O 1.20760 * 126.34488 * 298.96945 * 22 17 16
24 24 H 0.97005 * 119.99656 * 179.97438 * 1 2 3
25 25 H 1.09009 * 109.46564 * 300.00329 * 9 7 2
26 26 H 1.08998 * 109.47358 * 59.99308 * 9 7 2
27 27 H 1.08995 * 109.46838 * 299.99933 * 10 9 7
28 28 H 1.09001 * 109.47054 * 59.99908 * 10 9 7
29 29 H 1.09000 * 109.47250 * 300.00684 * 11 10 9
30 30 H 1.09007 * 109.46897 * 59.99806 * 11 10 9
31 31 H 1.09003 * 109.47092 * 300.00008 * 15 14 12
32 32 H 1.08997 * 109.47224 * 59.99878 * 15 14 12
33 33 H 1.09003 * 109.46823 * 299.99734 * 16 15 14
34 34 H 1.08991 * 109.47414 * 60.00074 * 16 15 14
35 35 H 1.09002 * 110.56796 * 336.09017 * 19 17 16
36 36 H 1.08997 * 110.57364 * 98.80856 * 19 17 16
37 37 H 1.09004 * 110.82788 * 155.29376 * 20 19 17
38 38 H 1.09000 * 110.83118 * 278.67109 * 20 19 17
39 39 H 1.09001 * 110.44600 * 81.11361 * 21 20 19
40 40 H 1.08998 * 110.44324 * 203.63478 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5466 1.4403 -0.7001
6 1 1.4465 2.6527 -0.6999
7 6 2.0046 -1.1939 0.0056
8 1 3.0846 -1.1939 0.0052
9 6 1.2512 -2.4991 0.0123
10 6 2.2455 -3.6620 0.0183
11 6 1.4806 -4.9870 0.0257
12 6 2.4599 -6.1324 0.0310
13 8 3.6478 -5.9115 0.0294
14 8 2.0125 -7.3979 0.0374
15 6 3.0126 -8.4506 0.0427
16 6 2.3180 -9.8138 0.0490
17 6 3.3718 -10.9231 0.0553
18 1 4.0682 -10.7796 -0.7709
19 6 2.6879 -12.3008 -0.0648
20 6 3.5335 -13.2135 0.8593
21 6 3.8828 -12.2642 2.0322
22 6 4.1209 -10.9179 1.3715
23 8 4.7849 -10.0113 1.8135
24 1 -0.4850 -0.8401 -0.0004
25 1 0.6248 -2.5524 0.9029
26 1 0.6241 -2.5613 -0.8770
27 1 2.8721 -3.6088 -0.8720
28 1 2.8721 -3.5996 0.9080
29 1 0.8541 -5.0399 0.9162
30 1 0.8536 -5.0496 -0.8638
31 1 3.6354 -8.3646 -0.8477
32 1 3.6353 -8.3556 0.9322
33 1 1.6949 -9.9001 0.9392
34 1 1.6956 -9.9086 -0.8407
35 1 1.6575 -12.2488 0.2871
36 1 2.7223 -12.6571 -1.0943
37 1 2.9455 -14.0620 1.2093
38 1 4.4351 -13.5527 0.3493
39 1 3.0503 -12.2024 2.7330
40 1 4.7852 -12.6036 2.5408
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000848864722.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:06:12
Heat of formation + Delta-G solvation = -186.809486 kcal
Electronic energy + Delta-G solvation = -19619.330371 eV
Core-core repulsion = 16396.807362 eV
Total energy + Delta-G solvation = -3222.523009 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.70730 -40.99919 -38.06900 -37.34881 -36.51318 -34.25872 -33.71426 -29.99067
-28.77234 -27.46067 -25.80772 -23.76555 -22.97829 -21.92855 -21.49957 -20.03814
-19.14402 -18.54742 -18.17138 -17.43460 -17.25006 -16.72056 -16.08826 -15.67122
-15.58011 -15.22738 -15.06354 -14.81092 -14.41178 -14.18126 -13.77595 -13.54492
-13.35965 -13.00937 -12.94267 -12.71442 -12.56635 -12.44234 -12.11124 -12.02843
-12.00484 -11.86330 -11.79393 -11.66250 -11.56815 -11.49800 -10.70781 -10.54942
-10.36556 -8.70477 -6.40333 0.82956 1.06975 1.51118 1.55078 1.60453
1.79243 2.55291 3.06834 3.14091 3.45610 3.47763 3.77283 3.82928
3.92786 3.98448 4.03750 4.07087 4.22365 4.32554 4.35566 4.47214
4.53755 4.66222 4.71216 4.79018 4.82729 4.86411 4.90821 4.91340
5.04249 5.18226 5.22935 5.29260 5.39680 5.41121 5.45854 5.99623
6.17422 6.44093 6.58401 6.63235 7.39527 8.71523
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.055770 B = 0.002533 C = 0.002471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 501.943912 B =11053.599159 C =11326.690209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.037 4.037
3 Si 1.119 2.881
4 H -0.272 1.272
5 H -0.274 1.274
6 H -0.278 1.278
7 C -0.625 4.625
8 H 0.043 0.957
9 C 0.009 3.991
10 C -0.081 4.081
11 C -0.104 4.104
12 C 0.466 3.534
13 O -0.543 6.543
14 O -0.354 6.354
15 C 0.048 3.952
16 C -0.095 4.095
17 C -0.149 4.149
18 H 0.108 0.892
19 C -0.107 4.107
20 C -0.114 4.114
21 C -0.182 4.182
22 C 0.356 3.644
23 O -0.490 6.490
24 H 0.259 0.741
25 H 0.001 0.999
26 H 0.003 0.997
27 H 0.047 0.953
28 H 0.044 0.956
29 H 0.121 0.879
30 H 0.124 0.876
31 H 0.065 0.935
32 H 0.057 0.943
33 H 0.084 0.916
34 H 0.108 0.892
35 H 0.091 0.909
36 H 0.096 0.904
37 H 0.101 0.899
38 H 0.078 0.922
39 H 0.119 0.881
40 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.654 -31.544 -0.109 31.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.234 4.234
3 Si 0.940 3.060
4 H -0.197 1.197
5 H -0.199 1.199
6 H -0.203 1.203
7 C -0.663 4.663
8 H 0.061 0.939
9 C -0.028 4.028
10 C -0.119 4.119
11 C -0.141 4.141
12 C 0.311 3.689
13 O -0.433 6.433
14 O -0.271 6.271
15 C -0.025 4.025
16 C -0.133 4.133
17 C -0.168 4.168
18 H 0.126 0.874
19 C -0.144 4.144
20 C -0.151 4.151
21 C -0.219 4.219
22 C 0.234 3.766
23 O -0.366 6.366
24 H 0.068 0.932
25 H 0.020 0.980
26 H 0.022 0.978
27 H 0.066 0.934
28 H 0.063 0.937
29 H 0.139 0.861
30 H 0.142 0.858
31 H 0.083 0.917
32 H 0.076 0.924
33 H 0.103 0.897
34 H 0.126 0.874
35 H 0.109 0.891
36 H 0.114 0.886
37 H 0.120 0.880
38 H 0.097 0.903
39 H 0.137 0.863
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.174 -29.435 0.117 29.606
hybrid contribution 0.561 -1.354 0.107 1.469
sum 3.735 -30.789 0.224 31.016
Atomic orbital electron populations
1.70887 1.07674 1.30081 1.48587 1.27394 0.96714 1.06662 0.92673
0.82910 0.74075 0.71163 0.77855 1.19745 1.19922 1.20305 1.22516
0.94542 0.93804 1.55424 0.93895 1.19182 0.94852 0.93434 0.95284
1.21159 0.97723 0.92089 1.00962 1.21516 0.96909 0.88303 1.07342
1.24253 0.89344 0.84340 0.70997 1.90653 1.20042 1.85744 1.46844
1.86466 1.41324 1.15520 1.83811 1.23435 0.90431 0.86267 1.02394
1.21477 0.97697 0.88254 1.05833 1.22429 0.98432 0.98037 0.97951
0.87391 1.22389 0.99776 0.90098 1.02121 1.22459 1.00994 0.97405
0.94253 1.22979 1.04858 0.93428 1.00673 1.25809 0.74599 0.88016
0.88167 1.90451 1.34492 1.42382 1.69273 0.93162 0.98025 0.97835
0.93428 0.93703 0.86118 0.85766 0.91660 0.92430 0.89746 0.87361
0.89073 0.88574 0.88034 0.90286 0.86334 0.88892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.44 13.65 21.45 0.29 -58.15 16
2 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16
3 Si 1.12 52.02 29.90 68.60 2.05 54.07 16
4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16
6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
7 C -0.63 -37.33 9.11 25.60 0.23 -37.09 16
8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16
9 C 0.01 0.50 4.28 29.85 0.13 0.63 16
10 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16
11 C -0.10 -3.51 5.81 29.85 0.17 -3.33 16
12 C 0.47 16.41 7.96 71.24 0.57 16.98 16
13 O -0.54 -23.15 15.73 21.96 0.35 -22.80 16
14 O -0.35 -10.41 10.22 -51.39 -0.53 -10.93 16
15 C 0.05 1.24 5.27 71.98 0.38 1.62 16
16 C -0.10 -1.44 4.92 30.60 0.15 -1.29 16
17 C -0.15 -1.76 2.87 -10.87 -0.03 -1.79 16
18 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16
19 C -0.11 -0.48 6.40 31.71 0.20 -0.27 16
20 C -0.11 -0.43 6.95 31.92 0.22 -0.21 16
21 C -0.18 -1.63 6.72 30.86 0.21 -1.43 16
22 C 0.36 6.17 7.04 29.70 0.21 6.38 16
23 O -0.49 -13.79 16.04 -1.45 -0.02 -13.82 16
24 H 0.26 16.14 7.22 -92.70 -0.67 15.47 16
25 H 0.00 0.08 8.01 -2.38 -0.02 0.06 16
26 H 0.00 0.18 8.00 -2.39 -0.02 0.16 16
27 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16
28 H 0.04 2.09 8.10 -2.39 -0.02 2.07 16
29 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16
30 H 0.12 3.65 8.14 -2.38 -0.02 3.63 16
31 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16
32 H 0.06 1.79 6.13 -2.39 -0.01 1.77 16
33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
35 H 0.09 0.26 7.85 -2.39 -0.02 0.24 16
36 H 0.10 0.19 8.14 -2.39 -0.02 0.18 16
37 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16
38 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16
39 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16
40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
Total: -1.00 -78.24 334.80 6.28 -71.95
By element:
Atomic # 1 Polarization: 3.61 SS G_CDS: 1.10 Total: 4.72 kcal
Atomic # 6 Polarization: -28.08 SS G_CDS: 3.04 Total: -25.04 kcal
Atomic # 7 Polarization: -58.44 SS G_CDS: 0.29 Total: -58.15 kcal
Atomic # 8 Polarization: -47.35 SS G_CDS: -0.20 Total: -47.55 kcal
Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal
Total: -78.24 6.28 -71.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000848864722.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -114.858 kcal
(2) G-P(sol) polarization free energy of solvation -78.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -186.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds