Wall clock time and date at job start Mon Mar 30 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48497 * 109.47374 * 270.00233 * 3 2 1 5 5 H 1.48499 * 109.47321 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.47018 * 150.00194 * 3 2 1 7 7 C 1.37870 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00629 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47664 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47083 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99877 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00177 * 179.97438 * 12 11 10 15 15 C 1.45195 * 117.00356 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47461 * 180.02562 * 15 14 12 17 17 O 1.20763 * 119.99849 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.54894 * 110.48422 * 93.23949 * 18 16 15 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 16 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 0.96994 * 120.00157 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46954 * 59.99235 * 9 7 2 25 25 H 1.09000 * 109.46805 * 299.99772 * 9 7 2 26 26 H 1.08994 * 109.47311 * 59.99296 * 10 9 7 27 27 H 1.09000 * 109.46763 * 299.99724 * 10 9 7 28 28 H 1.09004 * 109.46819 * 59.99781 * 11 10 9 29 29 H 1.09000 * 109.47068 * 299.99605 * 11 10 9 30 30 H 1.09003 * 109.47179 * 59.99642 * 15 14 12 31 31 H 1.09002 * 109.46934 * 300.00051 * 15 14 12 32 32 H 1.09002 * 110.43350 * 330.69728 * 18 16 15 33 33 H 1.08996 * 110.75388 * 275.05970 * 19 18 16 34 34 H 1.08993 * 110.76071 * 38.44196 * 19 18 16 35 35 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 36 36 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 37 37 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 38 38 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 39 39 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 40 40 H 1.08995 * 110.03881 * 119.28625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5517 -2.6363 -0.0014 12 6 6.0541 -4.0571 -0.0022 13 8 5.2689 -4.9755 -0.0031 14 8 7.3738 -4.3024 -0.0029 15 6 7.7855 -5.6947 -0.0042 16 6 9.2904 -5.7736 -0.0041 17 8 9.9481 -4.7608 -0.0036 18 6 9.9746 -7.1163 -0.0060 19 6 10.2939 -7.5600 -1.4552 20 6 11.4644 -8.5594 -1.2528 21 6 12.3022 -7.9373 -0.1166 22 6 11.3549 -7.0198 0.6762 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6806 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.6587 -3.1493 -0.8919 27 1 3.6581 -3.1512 0.8879 28 1 5.9150 -2.1233 0.8891 29 1 5.9150 -2.1217 -0.8910 30 1 7.3954 -6.1882 -0.8944 31 1 7.3961 -6.1896 0.8856 32 1 9.3538 -7.8604 0.4929 33 1 9.4338 -8.0549 -1.9060 34 1 10.6118 -6.7097 -2.0585 35 1 12.0578 -8.6410 -2.1636 36 1 11.0861 -9.5378 -0.9563 37 1 13.1235 -7.3550 -0.5341 38 1 12.6927 -8.7212 0.5325 39 1 11.7166 -5.9921 0.6435 40 1 11.2851 -7.3587 1.7098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848864973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:54 Heat of formation + Delta-G solvation = -154.078728 kcal Electronic energy + Delta-G solvation = -19582.446428 eV Core-core repulsion = 16361.342731 eV Total energy + Delta-G solvation = -3221.103697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76856 -39.91356 -37.52228 -36.42506 -34.44599 -32.18281 -30.96765 -29.20732 -29.05686 -27.87591 -24.16537 -22.30432 -21.02843 -20.86981 -19.94659 -19.51308 -17.59105 -17.22919 -16.83309 -16.67474 -16.15939 -15.86776 -15.19928 -14.79137 -14.26978 -14.04384 -13.88222 -13.77700 -12.92476 -12.79054 -12.70587 -12.45603 -12.05687 -11.73863 -11.68916 -11.63792 -11.57772 -11.25719 -11.05786 -10.87450 -10.86231 -10.81238 -10.47202 -10.02447 -9.91571 -9.76182 -9.64605 -9.18695 -8.53007 -6.02830 -4.01312 1.52580 2.34844 2.44289 3.31784 3.39266 3.42216 3.63698 4.01643 4.08182 4.40918 4.45972 4.75181 4.79908 4.86600 4.91106 4.97924 5.00246 5.05615 5.09455 5.19444 5.30383 5.34843 5.47024 5.48607 5.48836 5.61879 5.67550 5.80263 5.88153 5.92680 6.37342 6.45043 6.58200 6.84055 7.10726 7.29584 7.39201 7.78792 7.86534 8.55440 9.02791 9.58864 11.10615 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.055104 B = 0.002613 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.011481 B =10712.482962 C =11005.290723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.114 4.114 12 C 0.461 3.539 13 O -0.504 6.504 14 O -0.346 6.346 15 C 0.013 3.987 16 C 0.362 3.638 17 O -0.425 6.425 18 C -0.137 4.137 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.119 4.119 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.845 -16.822 -0.733 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.130 4.130 11 C -0.151 4.151 12 C 0.304 3.696 13 O -0.391 6.391 14 O -0.263 6.263 15 C -0.062 4.062 16 C 0.234 3.766 17 O -0.295 6.295 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.157 4.157 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.830 -16.450 -0.724 29.793 hybrid contribution 0.138 0.637 0.030 0.652 sum 24.967 -15.813 -0.694 29.562 Atomic orbital electron populations 1.69915 1.06311 1.26877 1.51121 1.25043 0.94764 0.99200 0.94598 0.86763 0.80356 0.83559 0.78502 1.20286 1.21407 1.18945 1.21117 0.89348 0.94592 1.50795 0.90906 1.19604 0.97431 0.91647 0.96485 1.21402 0.88420 1.00301 1.02837 1.21728 0.99787 0.88163 1.05453 1.24445 0.79444 0.93968 0.71715 1.90663 1.56400 1.46925 1.45141 1.86645 1.27197 1.27872 1.84625 1.23402 0.94864 0.82804 1.05147 1.24436 0.89543 0.91042 0.71531 1.90426 1.67539 1.38065 1.33509 1.22519 0.98267 0.95497 0.99358 1.22550 0.99124 0.99586 0.93696 1.22417 0.96358 0.98448 0.98797 1.22126 0.98193 0.98712 0.97122 1.22172 0.92608 1.01822 0.99057 0.92734 0.96361 0.96799 0.91795 0.91768 0.87929 0.87924 0.87851 0.87862 0.87831 0.90385 0.90697 0.91179 0.91164 0.91528 0.91541 0.90010 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 11 C -0.11 -1.80 5.81 -27.88 -0.16 -1.96 16 12 C 0.46 7.32 7.96 36.01 0.29 7.60 16 13 O -0.50 -9.14 15.73 -18.75 -0.29 -9.43 16 14 O -0.35 -4.97 9.75 -45.91 -0.45 -5.42 16 15 C 0.01 0.13 5.88 36.00 0.21 0.35 16 16 C 0.36 3.61 6.36 -29.04 -0.18 3.42 16 17 O -0.43 -5.79 15.83 -13.71 -0.22 -6.00 16 18 C -0.14 -0.92 3.18 -90.11 -0.29 -1.21 16 19 C -0.11 -0.67 6.34 -24.55 -0.16 -0.82 16 20 C -0.12 -0.61 6.84 -24.88 -0.17 -0.78 16 21 C -0.12 -0.69 6.80 -25.62 -0.17 -0.86 16 22 C -0.12 -0.82 6.33 -25.62 -0.16 -0.98 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 25 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 26 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 27 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 28 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.10 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.10 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.72 6.84 -51.93 -0.36 0.36 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -34.06 334.31 -7.89 -41.95 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -6.62 Total: -4.60 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.46 Total: -11.21 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.96 Total: -20.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.06 -7.89 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.130 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds