Wall clock time and date at job start Mon Mar 30 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48497 * 109.47374 * 270.00233 * 3 2 1 5 5 H 1.48499 * 109.47321 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.47018 * 150.00194 * 3 2 1 7 7 C 1.37870 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00629 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47664 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47083 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99877 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00177 * 179.97438 * 12 11 10 15 15 C 1.45195 * 117.00356 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47461 * 180.02562 * 15 14 12 17 17 O 1.20763 * 119.99849 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.54894 * 110.48422 * 93.23949 * 18 16 15 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 16 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 0.96994 * 120.00157 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46954 * 59.99235 * 9 7 2 25 25 H 1.09000 * 109.46805 * 299.99772 * 9 7 2 26 26 H 1.08994 * 109.47311 * 59.99296 * 10 9 7 27 27 H 1.09000 * 109.46763 * 299.99724 * 10 9 7 28 28 H 1.09004 * 109.46819 * 59.99781 * 11 10 9 29 29 H 1.09000 * 109.47068 * 299.99605 * 11 10 9 30 30 H 1.09003 * 109.47179 * 59.99642 * 15 14 12 31 31 H 1.09002 * 109.46934 * 300.00051 * 15 14 12 32 32 H 1.09002 * 110.43350 * 330.69728 * 18 16 15 33 33 H 1.08996 * 110.75388 * 275.05970 * 19 18 16 34 34 H 1.08993 * 110.76071 * 38.44196 * 19 18 16 35 35 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 36 36 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 37 37 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 38 38 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 39 39 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 40 40 H 1.08995 * 110.03881 * 119.28625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5517 -2.6363 -0.0014 12 6 6.0541 -4.0571 -0.0022 13 8 5.2689 -4.9755 -0.0031 14 8 7.3738 -4.3024 -0.0029 15 6 7.7855 -5.6947 -0.0042 16 6 9.2904 -5.7736 -0.0041 17 8 9.9481 -4.7608 -0.0036 18 6 9.9746 -7.1163 -0.0060 19 6 10.2939 -7.5600 -1.4552 20 6 11.4644 -8.5594 -1.2528 21 6 12.3022 -7.9373 -0.1166 22 6 11.3549 -7.0198 0.6762 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6806 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.6587 -3.1493 -0.8919 27 1 3.6581 -3.1512 0.8879 28 1 5.9150 -2.1233 0.8891 29 1 5.9150 -2.1217 -0.8910 30 1 7.3954 -6.1882 -0.8944 31 1 7.3961 -6.1896 0.8856 32 1 9.3538 -7.8604 0.4929 33 1 9.4338 -8.0549 -1.9060 34 1 10.6118 -6.7097 -2.0585 35 1 12.0578 -8.6410 -2.1636 36 1 11.0861 -9.5378 -0.9563 37 1 13.1235 -7.3550 -0.5341 38 1 12.6927 -8.7212 0.5325 39 1 11.7166 -5.9921 0.6435 40 1 11.2851 -7.3587 1.7098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:54 Heat of formation + Delta-G solvation = -173.238283 kcal Electronic energy + Delta-G solvation = -19583.277249 eV Core-core repulsion = 16361.342731 eV Total energy + Delta-G solvation = -3221.934517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81179 -40.84256 -38.18848 -37.56583 -36.19991 -34.20517 -31.77349 -30.53563 -29.64809 -28.87116 -25.89209 -23.17996 -22.35920 -21.44837 -21.38291 -20.20665 -18.96744 -18.69336 -17.99868 -17.90879 -17.11814 -16.49701 -16.25871 -16.22634 -15.59945 -15.40290 -14.77371 -14.61057 -14.33860 -14.06096 -13.95417 -13.68026 -13.27592 -13.12469 -12.74173 -12.54980 -12.17595 -12.11722 -12.01027 -11.92943 -11.91371 -11.77066 -11.70426 -11.57342 -11.50689 -11.32560 -11.30120 -10.74795 -10.68375 -8.27597 -6.32924 0.74742 1.12093 1.39695 1.41569 1.42559 1.54140 2.38955 2.81931 3.07728 3.51172 3.59551 3.75596 3.90951 4.04026 4.05390 4.11578 4.16924 4.29844 4.45915 4.50189 4.53871 4.56596 4.62728 4.76860 4.83748 4.90499 4.92020 5.01221 5.06642 5.18378 5.21453 5.25586 5.32299 5.46141 5.51937 5.56590 5.67303 6.29794 6.33432 6.67355 6.75548 7.31456 8.89578 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.055104 B = 0.002613 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.011481 B =10712.482962 C =11005.290723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.025 0.975 9 C -0.012 4.012 10 C -0.084 4.084 11 C -0.108 4.108 12 C 0.469 3.531 13 O -0.534 6.534 14 O -0.353 6.353 15 C 0.001 3.999 16 C 0.371 3.629 17 O -0.468 6.468 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.266 0.734 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.301 -16.971 -0.726 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.043 0.957 9 C -0.049 4.049 10 C -0.121 4.121 11 C -0.145 4.145 12 C 0.314 3.686 13 O -0.423 6.423 14 O -0.270 6.270 15 C -0.073 4.073 16 C 0.246 3.754 17 O -0.341 6.341 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.160 4.160 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.318 -16.630 -0.719 31.990 hybrid contribution -0.666 0.557 0.028 0.869 sum 26.652 -16.073 -0.690 31.131 Atomic orbital electron populations 1.70088 1.08553 1.28244 1.52662 1.26134 0.95716 1.03945 0.93990 0.85555 0.79676 0.77444 0.79338 1.19020 1.21267 1.16069 1.21509 0.92428 0.92982 1.50610 0.95668 1.19555 0.93704 0.94084 0.97568 1.21151 0.91845 0.97819 1.01334 1.21567 0.96296 0.88918 1.07696 1.24279 0.79781 0.93581 0.70985 1.90658 1.57206 1.47746 1.46686 1.86608 1.25942 1.30285 1.84130 1.23833 0.95493 0.81105 1.06845 1.24866 0.89059 0.91820 0.69647 1.90423 1.68172 1.39692 1.35842 1.22612 0.98231 0.93959 1.00310 1.22598 1.00205 0.99438 0.92859 1.22428 0.95822 0.98657 0.98762 1.22139 0.97854 0.98725 0.97426 1.22195 0.92954 1.00778 1.00031 0.92510 0.95035 0.95161 0.93412 0.93424 0.85698 0.85626 0.86191 0.86134 0.85060 0.88832 0.92278 0.90734 0.89730 0.92144 0.90283 0.92466 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 13.96 21.44 0.30 -60.73 16 2 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 3 Si 0.96 43.90 27.47 68.60 1.88 45.79 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.54 -31.64 9.66 25.60 0.25 -31.40 16 8 H 0.02 1.66 7.99 -2.91 -0.02 1.63 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.08 -3.32 4.44 30.59 0.14 -3.19 16 11 C -0.11 -3.16 5.81 29.85 0.17 -2.99 16 12 C 0.47 14.17 7.96 71.24 0.57 14.74 16 13 O -0.53 -18.93 15.73 21.97 0.35 -18.58 16 14 O -0.35 -9.53 9.75 -45.03 -0.44 -9.97 16 15 C 0.00 0.02 5.88 71.24 0.42 0.44 16 16 C 0.37 6.92 6.36 29.10 0.19 7.11 16 17 O -0.47 -12.62 15.83 17.39 0.28 -12.34 16 18 C -0.13 -1.51 3.18 -10.46 -0.03 -1.54 16 19 C -0.11 -1.12 6.34 32.01 0.20 -0.92 16 20 C -0.12 -0.91 6.84 31.79 0.22 -0.69 16 21 C -0.12 -1.16 6.80 31.32 0.21 -0.94 16 22 C -0.12 -1.51 6.33 31.32 0.20 -1.31 16 23 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 24 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 25 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 26 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 27 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 28 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 29 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.12 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.12 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.78 8.05 -2.39 -0.02 0.76 16 35 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.06 1.01 6.84 -2.39 -0.02 0.99 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -76.00 334.31 6.42 -69.58 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.95 Total: 7.01 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 3.11 Total: -20.75 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.30 Total: -60.73 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: 0.18 Total: -40.90 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -76.00 6.42 -69.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.656 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds