Wall clock time and date at job start Mon Mar 30 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47531 * 270.00165 * 3 2 1 5 5 H 1.48504 * 109.46970 * 30.00010 * 3 2 1 6 6 H 1.48501 * 109.47089 * 149.99685 * 3 2 1 7 7 C 1.37873 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47288 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46969 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00285 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99756 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00061 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47056 * 180.02562 * 15 14 12 17 17 C 1.53381 * 109.35307 * 295.42932 * 16 15 14 18 18 C 1.53232 * 109.18207 * 176.38021 * 17 16 15 19 19 C 1.51270 * 108.69741 * 54.54959 * 18 17 16 20 20 O 1.20757 * 120.84798 * 128.53181 * 19 18 17 21 21 C 1.51264 * 118.29993 * 308.56051 * 19 18 17 22 22 C 1.52955 * 109.41264 * 175.00013 * 16 15 14 23 23 H 0.96999 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47154 * 60.00291 * 9 7 2 25 25 H 1.08992 * 109.47414 * 299.99851 * 9 7 2 26 26 H 1.09004 * 109.46615 * 60.00235 * 10 9 7 27 27 H 1.09003 * 109.47494 * 300.00157 * 10 9 7 28 28 H 1.09003 * 109.46688 * 60.00211 * 11 10 9 29 29 H 1.09003 * 109.46961 * 300.00459 * 11 10 9 30 30 H 1.09002 * 109.46988 * 60.00029 * 15 14 12 31 31 H 1.08996 * 109.46920 * 300.00070 * 15 14 12 32 32 H 1.08993 * 109.41526 * 55.14010 * 16 15 14 33 33 H 1.08993 * 109.73630 * 56.38240 * 17 16 15 34 34 H 1.08997 * 109.45237 * 296.20424 * 17 16 15 35 35 H 1.09002 * 109.62686 * 294.73853 * 18 17 16 36 36 H 1.09001 * 109.62522 * 174.36190 * 18 17 16 37 37 H 1.09001 * 109.62865 * 171.06249 * 21 19 18 38 38 H 1.09011 * 109.62659 * 291.43588 * 21 19 18 39 39 H 1.09007 * 109.48519 * 63.72600 * 22 16 15 40 40 H 1.08998 * 109.49626 * 303.68944 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 6 2.4596 -6.1325 -0.0050 13 8 3.6475 -5.9117 -0.0034 14 8 2.0122 -7.3980 -0.0070 15 6 3.0122 -8.4507 -0.0079 16 6 2.3176 -9.8140 -0.0109 17 6 1.5319 -9.9870 1.2950 18 6 0.7654 -11.3130 1.2495 19 6 1.7436 -12.4288 0.9555 20 8 1.7868 -13.4140 1.6524 21 6 2.6666 -12.2785 -0.2334 22 6 3.3674 -10.9192 -0.1375 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8879 26 1 2.8719 -3.6050 0.8874 27 1 2.8720 -3.6035 -0.8927 28 1 0.8540 -5.0437 -0.8949 29 1 0.8532 -5.0458 0.8851 30 1 3.6344 -8.3615 0.8827 31 1 3.6355 -8.3590 -0.8973 32 1 1.6304 -9.8686 -0.8551 33 1 0.8274 -9.1637 1.4125 34 1 2.2243 -9.9961 2.1368 35 1 0.0097 -11.2724 0.4650 36 1 0.2849 -11.4913 2.2115 37 1 3.4102 -13.0754 -0.2227 38 1 2.0874 -12.3306 -1.1555 39 1 4.0166 -10.9060 0.7381 40 1 3.9637 -10.7534 -1.0347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848866544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:00 Heat of formation + Delta-G solvation = -167.072507 kcal Electronic energy + Delta-G solvation = -19675.530175 eV Core-core repulsion = 16453.863026 eV Total energy + Delta-G solvation = -3221.667149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55429 -40.02621 -37.56550 -36.04264 -34.32522 -32.15930 -31.72443 -30.86272 -28.20311 -25.55192 -23.96448 -23.63952 -21.37240 -21.03624 -19.86664 -19.55089 -17.37519 -16.65930 -16.61178 -16.26289 -15.82858 -15.73112 -15.17352 -14.80429 -14.45056 -14.20503 -14.08828 -13.50064 -13.01946 -12.92796 -12.68769 -12.32474 -12.16818 -11.94995 -11.88110 -11.50099 -11.41423 -11.12027 -11.08208 -10.85084 -10.69873 -10.59072 -10.55628 -10.21109 -9.77388 -9.75941 -9.41766 -9.11127 -8.36035 -6.01485 -4.03433 1.55687 2.46757 2.75595 3.32445 3.38552 3.42900 3.68337 4.16693 4.24210 4.27769 4.46197 4.54592 4.78051 4.82043 4.90358 4.93124 5.07523 5.16464 5.21860 5.34706 5.37650 5.41698 5.46537 5.50454 5.59212 5.62160 5.63649 5.86236 5.87347 6.08503 6.55406 6.59503 6.79618 7.05146 7.09074 7.64751 7.76309 7.98046 7.99786 8.40956 9.03349 9.60824 11.09955 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.057023 B = 0.002536 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.913674 B =11036.286951 C =11342.314396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.460 3.540 13 O -0.509 6.509 14 O -0.361 6.361 15 C 0.069 3.931 16 C -0.093 4.093 17 C -0.110 4.110 18 C -0.170 4.170 19 C 0.361 3.639 20 O -0.461 6.461 21 C -0.168 4.168 22 C -0.108 4.108 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -23.614 -0.945 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.149 4.149 12 C 0.304 3.696 13 O -0.396 6.396 14 O -0.279 6.279 15 C -0.005 4.005 16 C -0.111 4.111 17 C -0.147 4.147 18 C -0.208 4.208 19 C 0.236 3.764 20 O -0.334 6.334 21 C -0.205 4.205 22 C -0.146 4.146 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.401 -23.985 -0.563 24.111 hybrid contribution 0.555 0.971 -0.106 1.123 sum 2.957 -23.014 -0.669 23.213 Atomic orbital electron populations 1.69959 1.06036 1.26645 1.50948 1.25019 0.94871 0.99292 0.95304 0.86579 0.79872 0.83355 0.78124 1.20649 1.21225 1.19845 1.21236 0.93176 0.90921 1.50493 0.92548 1.19125 0.93887 0.91175 0.97428 1.21580 0.98955 0.91277 1.01955 1.21696 0.97326 0.90665 1.05242 1.24414 0.90145 0.83364 0.71698 1.90646 1.18584 1.85131 1.45201 1.86517 1.40777 1.16072 1.84542 1.22974 0.90073 0.84743 1.02752 1.21340 0.97801 0.92209 0.99759 1.21658 0.99592 0.96332 0.97148 1.22324 0.98777 0.94999 1.04668 1.24965 0.82057 0.85622 0.83708 1.90419 1.64938 1.30875 1.47193 1.22288 0.99937 0.99375 0.98941 1.21483 0.97504 0.91886 1.03692 0.92988 0.96370 0.96341 0.92451 0.92462 0.88093 0.88106 0.91233 0.91104 0.89156 0.89321 0.91360 0.88099 0.89192 0.89124 0.88076 0.90929 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.17 16 11 C -0.11 -1.78 5.81 -27.88 -0.16 -1.94 16 12 C 0.46 7.14 7.96 36.01 0.29 7.43 16 13 O -0.51 -9.38 15.73 -18.75 -0.29 -9.68 16 14 O -0.36 -4.53 9.69 -39.25 -0.38 -4.91 16 15 C 0.07 0.67 4.84 37.16 0.18 0.85 16 16 C -0.09 -0.63 2.33 -90.45 -0.21 -0.84 16 17 C -0.11 -0.76 5.19 -26.41 -0.14 -0.90 16 18 C -0.17 -1.09 6.15 -27.48 -0.17 -1.26 16 19 C 0.36 2.88 6.72 -28.48 -0.19 2.69 16 20 O -0.46 -5.48 17.89 6.00 0.11 -5.37 16 21 C -0.17 -0.92 6.17 -27.49 -0.17 -1.09 16 22 C -0.11 -0.59 5.22 -26.64 -0.14 -0.73 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.67 7.73 -51.93 -0.40 0.27 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -33.15 335.78 -7.88 -41.03 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -6.70 Total: -5.77 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.38 Total: -11.09 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.57 Total: -19.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.15 -7.88 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848866544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.047 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds