Wall clock time and date at job start Mon Mar 30 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47531 * 270.00165 * 3 2 1 5 5 H 1.48504 * 109.46970 * 30.00010 * 3 2 1 6 6 H 1.48501 * 109.47089 * 149.99685 * 3 2 1 7 7 C 1.37873 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47288 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46969 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00285 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99756 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00061 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47056 * 180.02562 * 15 14 12 17 17 C 1.53381 * 109.35307 * 295.42932 * 16 15 14 18 18 C 1.53232 * 109.18207 * 176.38021 * 17 16 15 19 19 C 1.51270 * 108.69741 * 54.54959 * 18 17 16 20 20 O 1.20757 * 120.84798 * 128.53181 * 19 18 17 21 21 C 1.51264 * 118.29993 * 308.56051 * 19 18 17 22 22 C 1.52955 * 109.41264 * 175.00013 * 16 15 14 23 23 H 0.96999 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47154 * 60.00291 * 9 7 2 25 25 H 1.08992 * 109.47414 * 299.99851 * 9 7 2 26 26 H 1.09004 * 109.46615 * 60.00235 * 10 9 7 27 27 H 1.09003 * 109.47494 * 300.00157 * 10 9 7 28 28 H 1.09003 * 109.46688 * 60.00211 * 11 10 9 29 29 H 1.09003 * 109.46961 * 300.00459 * 11 10 9 30 30 H 1.09002 * 109.46988 * 60.00029 * 15 14 12 31 31 H 1.08996 * 109.46920 * 300.00070 * 15 14 12 32 32 H 1.08993 * 109.41526 * 55.14010 * 16 15 14 33 33 H 1.08993 * 109.73630 * 56.38240 * 17 16 15 34 34 H 1.08997 * 109.45237 * 296.20424 * 17 16 15 35 35 H 1.09002 * 109.62686 * 294.73853 * 18 17 16 36 36 H 1.09001 * 109.62522 * 174.36190 * 18 17 16 37 37 H 1.09001 * 109.62865 * 171.06249 * 21 19 18 38 38 H 1.09011 * 109.62659 * 291.43588 * 21 19 18 39 39 H 1.09007 * 109.48519 * 63.72600 * 22 16 15 40 40 H 1.08998 * 109.49626 * 303.68944 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 6 2.4596 -6.1325 -0.0050 13 8 3.6475 -5.9117 -0.0034 14 8 2.0122 -7.3980 -0.0070 15 6 3.0122 -8.4507 -0.0079 16 6 2.3176 -9.8140 -0.0109 17 6 1.5319 -9.9870 1.2950 18 6 0.7654 -11.3130 1.2495 19 6 1.7436 -12.4288 0.9555 20 8 1.7868 -13.4140 1.6524 21 6 2.6666 -12.2785 -0.2334 22 6 3.3674 -10.9192 -0.1375 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8879 26 1 2.8719 -3.6050 0.8874 27 1 2.8720 -3.6035 -0.8927 28 1 0.8540 -5.0437 -0.8949 29 1 0.8532 -5.0458 0.8851 30 1 3.6344 -8.3615 0.8827 31 1 3.6355 -8.3590 -0.8973 32 1 1.6304 -9.8686 -0.8551 33 1 0.8274 -9.1637 1.4125 34 1 2.2243 -9.9961 2.1368 35 1 0.0097 -11.2724 0.4650 36 1 0.2849 -11.4913 2.2115 37 1 3.4102 -13.0754 -0.2227 38 1 2.0874 -12.3306 -1.1555 39 1 4.0166 -10.9060 0.7381 40 1 3.9637 -10.7534 -1.0347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848866544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:00 Heat of formation + Delta-G solvation = -185.316709 kcal Electronic energy + Delta-G solvation = -19676.321303 eV Core-core repulsion = 16453.863026 eV Total energy + Delta-G solvation = -3222.458277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56560 -40.83232 -38.42119 -37.02736 -36.13979 -34.08552 -32.21954 -31.62635 -29.90633 -26.68054 -25.45609 -24.22189 -22.72024 -21.85486 -21.31987 -20.14861 -18.69207 -18.36023 -17.68197 -17.30797 -16.81771 -16.43464 -16.40823 -16.00580 -15.67964 -15.17654 -14.93128 -14.41794 -14.31093 -13.96412 -13.81705 -13.58522 -13.32400 -13.14678 -12.89262 -12.63750 -12.51881 -12.43905 -12.37703 -12.08044 -11.81611 -11.68876 -11.60264 -11.56540 -11.37683 -11.33008 -11.10345 -10.53180 -10.37912 -8.19363 -6.29121 0.94011 1.23984 1.41337 1.41950 1.53234 1.70574 2.42672 3.14158 3.14661 3.58921 3.60484 3.71484 3.92278 4.07135 4.20672 4.21643 4.24644 4.32700 4.34987 4.41330 4.52397 4.61517 4.73267 4.78842 4.89877 4.93419 5.01720 5.03873 5.07298 5.09608 5.17889 5.31258 5.33774 5.47325 5.55248 5.75080 5.87782 6.27564 6.49273 6.80613 6.86911 7.39622 8.92147 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.057023 B = 0.002536 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.913674 B =11036.286951 C =11342.314396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.106 4.106 12 C 0.470 3.530 13 O -0.542 6.542 14 O -0.352 6.352 15 C 0.062 3.938 16 C -0.084 4.084 17 C -0.109 4.109 18 C -0.166 4.166 19 C 0.362 3.638 20 O -0.508 6.508 21 C -0.162 4.162 22 C -0.103 4.103 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -24.074 -1.777 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.432 6.432 14 O -0.269 6.269 15 C -0.011 4.011 16 C -0.102 4.102 17 C -0.146 4.146 18 C -0.204 4.204 19 C 0.241 3.759 20 O -0.384 6.384 21 C -0.199 4.199 22 C -0.141 4.141 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.582 -24.457 -1.403 24.633 hybrid contribution 0.476 1.067 0.152 1.179 sum 3.058 -23.390 -1.251 23.622 Atomic orbital electron populations 1.70063 1.07492 1.27790 1.51586 1.25895 0.95803 1.03055 0.94768 0.85511 0.78635 0.78784 0.78511 1.19745 1.20506 1.19230 1.21682 0.93415 0.92692 1.50666 0.92846 1.19016 0.94210 0.92137 0.95873 1.21272 0.97882 0.92369 1.00958 1.21499 0.97068 0.88643 1.07110 1.24118 0.89207 0.84262 0.70915 1.90642 1.19840 1.85771 1.46994 1.86489 1.41330 1.15333 1.83739 1.23282 0.90015 0.85069 1.02760 1.21340 0.98151 0.90629 1.00119 1.21632 0.99452 0.96366 0.97163 1.22317 0.98820 0.94004 1.05214 1.25479 0.81963 0.84917 0.83581 1.90413 1.66382 1.32739 1.48914 1.22292 0.99712 0.99242 0.98666 1.21464 0.97133 0.91183 1.04322 0.92677 0.97773 0.97829 0.93513 0.93381 0.86193 0.86342 0.91747 0.90734 0.87626 0.89760 0.92033 0.85937 0.89808 0.89029 0.85623 0.91438 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.55 -31.21 9.11 25.60 0.23 -30.97 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.58 4.44 30.59 0.14 -3.44 16 11 C -0.11 -3.23 5.81 29.85 0.17 -3.06 16 12 C 0.47 13.95 7.96 71.24 0.57 14.52 16 13 O -0.54 -19.65 15.73 21.98 0.35 -19.31 16 14 O -0.35 -8.12 9.69 -51.40 -0.50 -8.61 16 15 C 0.06 1.10 4.84 71.98 0.35 1.45 16 16 C -0.08 -0.93 2.33 -10.68 -0.02 -0.95 16 17 C -0.11 -1.32 5.19 30.80 0.16 -1.16 16 18 C -0.17 -1.85 6.15 30.11 0.19 -1.67 16 19 C 0.36 5.30 6.72 29.46 0.20 5.50 16 20 O -0.51 -12.00 17.89 -1.44 -0.03 -12.03 16 21 C -0.16 -1.38 6.17 30.10 0.19 -1.20 16 22 C -0.10 -0.87 5.22 30.66 0.16 -0.71 16 23 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 25 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.05 1.99 8.10 -2.38 -0.02 1.97 16 27 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 28 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.13 7.73 -2.39 -0.02 1.11 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -71.62 335.78 6.06 -65.56 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.00 Total: 2.93 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 2.93 Total: -19.66 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.19 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.18 Total: -39.95 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.62 6.06 -65.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848866544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.762 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds