Wall clock time and date at job start Mon Mar 30 2020 07:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47221 * 2 1 4 4 C 1.50703 * 109.46992 * 240.00335 * 2 1 3 5 5 H 1.07997 * 120.00565 * 240.00219 * 4 2 1 6 6 C 1.37881 * 119.99848 * 60.00155 * 4 2 1 7 7 N 1.31514 * 120.00146 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47240 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47376 * 120.00131 * 8 6 4 11 11 H 1.48503 * 109.47304 * 240.00256 * 8 6 4 12 12 C 1.50700 * 109.47061 * 120.00721 * 2 1 3 13 13 O 1.20823 * 119.99906 * 120.00019 * 12 2 1 14 14 O 1.34225 * 120.00016 * 299.99698 * 12 2 1 15 15 C 1.45202 * 117.00409 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.62087 * 330.38105 * 15 14 12 17 17 C 1.53226 * 109.62890 * 210.00069 * 15 14 12 18 18 C 1.52957 * 109.40481 * 185.46214 * 17 15 14 19 19 C 1.52965 * 109.75768 * 63.63378 * 18 17 15 20 20 C 1.53236 * 109.39757 * 296.29730 * 19 18 17 21 21 C 1.52999 * 109.68639 * 295.01506 * 20 19 18 22 22 C 1.53001 * 109.77352 * 174.50493 * 20 19 18 23 23 C 1.51268 * 108.48735 * 54.73537 * 20 19 18 24 24 O 1.20759 * 120.85192 * 128.58698 * 23 20 19 25 25 H 1.09004 * 109.47200 * 59.99149 * 1 2 3 26 26 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47220 * 299.99643 * 1 2 3 28 28 H 0.96997 * 120.00471 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.48271 * 65.48616 * 17 15 14 30 30 H 1.09000 * 109.49556 * 305.45318 * 17 15 14 31 31 H 1.09002 * 109.41418 * 183.70553 * 18 17 15 32 32 H 1.09004 * 109.41599 * 303.56741 * 18 17 15 33 33 H 1.08998 * 109.47758 * 56.34842 * 19 18 17 34 34 H 1.08992 * 109.48028 * 176.38621 * 19 18 17 35 35 H 1.09001 * 109.47065 * 179.01993 * 21 20 19 36 36 H 1.09004 * 109.47304 * 299.01509 * 21 20 19 37 37 H 1.09002 * 109.47401 * 59.01984 * 21 20 19 38 38 H 1.08997 * 109.47145 * 300.92480 * 22 20 19 39 39 H 1.08997 * 109.46978 * 60.93332 * 22 20 19 40 40 H 1.09002 * 109.47016 * 180.92493 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1462 -2.2867 -3.6041 10 1 1.1659 -1.5862 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 6 2.0323 -0.7106 1.2304 13 8 2.7269 -1.6929 1.1194 14 8 1.7081 -0.2521 2.4495 15 6 2.2277 -0.9861 3.5896 16 1 2.3492 -2.0363 3.3242 17 6 1.2560 -0.8620 4.7679 18 6 1.8701 -1.5203 6.0044 19 6 3.1401 -0.7715 6.4120 20 6 4.1833 -0.8937 5.2963 21 6 4.6079 -2.3558 5.1456 22 6 5.4046 -0.0360 5.6333 23 6 3.5630 -0.4091 4.0045 24 8 4.1194 0.4175 3.3223 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7080 1.1612 -3.4843 29 1 0.3181 -1.3588 4.5195 30 1 1.0660 0.1915 4.9733 31 1 1.1528 -1.4905 6.8246 32 1 2.1181 -2.5572 5.7774 33 1 2.9048 0.2798 6.5777 34 1 3.5384 -1.2040 7.3298 35 1 5.3368 -2.4413 4.3397 36 1 5.0546 -2.7024 6.0776 37 1 3.7351 -2.9655 4.9122 38 1 5.0982 1.0039 5.7467 39 1 5.8495 -0.3873 6.5642 40 1 6.1362 -0.1136 4.8291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:09 Heat of formation + Delta-G solvation = -148.824163 kcal Electronic energy + Delta-G solvation = -21526.818455 eV Core-core repulsion = 18305.942614 eV Total energy + Delta-G solvation = -3220.875842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78407 -39.09881 -36.87359 -35.77660 -33.86115 -33.15943 -30.61765 -29.01246 -27.47049 -25.88912 -25.18092 -23.52541 -21.87165 -21.52099 -19.72524 -18.39001 -16.87955 -16.32289 -16.07012 -16.00449 -15.49661 -15.03075 -14.43373 -14.30662 -13.92546 -13.77482 -13.39011 -12.95106 -12.62881 -12.53885 -12.35272 -12.22711 -12.03261 -11.78904 -11.57662 -11.44314 -11.15522 -11.04779 -10.85979 -10.73033 -10.68824 -10.62534 -10.53265 -10.28520 -10.03014 -9.11253 -9.03422 -8.99607 -8.42409 -6.07461 -4.12519 2.03836 3.23062 3.30851 3.34809 3.38954 3.48429 4.00166 4.42493 4.44177 4.51868 4.62220 4.81355 4.93891 5.05044 5.20452 5.23755 5.26096 5.43371 5.46099 5.56047 5.62457 5.69809 5.69958 5.74983 5.81612 5.92745 5.99098 6.06419 6.16460 6.21511 6.68881 6.88155 6.89966 7.19447 7.47264 7.59798 7.76580 7.97607 8.16993 8.85546 8.96558 9.52584 11.00179 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031687 B = 0.004832 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.443304 B = 5792.747959 C = 6132.914835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.510 4.510 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.469 3.531 13 O -0.518 6.518 14 O -0.345 6.345 15 C 0.035 3.965 16 H 0.110 0.890 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.134 4.134 23 C 0.352 3.648 24 O -0.427 6.427 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -3.830 19.364 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.548 4.548 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.314 3.686 13 O -0.404 6.404 14 O -0.263 6.263 15 C -0.021 4.021 16 H 0.127 0.873 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.197 4.197 22 C -0.191 4.191 23 C 0.224 3.776 24 O -0.296 6.296 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.238 -3.569 18.833 19.298 hybrid contribution 0.373 -0.543 -0.828 1.058 sum 2.611 -4.112 18.005 18.652 Atomic orbital electron populations 1.21735 0.95571 1.00000 1.01780 1.18771 0.94834 0.97094 0.85389 0.91704 1.21167 1.31745 1.13156 0.88744 0.90630 1.24938 0.94941 0.95036 0.99118 1.69888 1.36617 1.22864 1.23720 0.86325 0.78630 0.79717 0.82164 1.19538 1.20875 1.20878 1.25418 0.76294 0.82928 0.83964 1.90469 1.36483 1.27063 1.86423 1.86751 1.69254 1.55403 1.14891 1.23143 0.93375 0.98719 0.86911 0.87272 1.21597 0.98127 1.03056 0.91915 1.21621 0.97058 1.00201 0.97215 1.21685 0.94183 1.01507 0.97061 1.21341 0.96991 0.98038 0.94601 1.21855 1.02142 0.92904 1.02795 1.21704 0.96393 0.99332 1.01685 1.25227 0.86669 0.79915 0.85833 1.90420 1.61328 1.25856 1.52036 0.88514 0.94984 0.95776 0.92765 0.89833 0.90286 0.90286 0.90788 0.91137 0.90454 0.91916 0.91241 0.91544 0.92161 0.91903 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.90 37.16 0.33 -2.90 16 2 C 0.06 1.55 2.74 -92.92 -0.25 1.30 16 3 H 0.07 1.83 8.14 -51.93 -0.42 1.40 16 4 C -0.51 -14.82 8.37 -34.44 -0.29 -15.11 16 5 H 0.08 2.29 6.76 -52.49 -0.35 1.93 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.47 11.67 7.14 36.01 0.26 11.93 16 13 O -0.52 -13.71 14.68 -18.75 -0.28 -13.98 16 14 O -0.35 -7.33 9.44 -45.64 -0.43 -7.76 16 15 C 0.04 0.58 2.46 -27.49 -0.07 0.51 16 16 H 0.11 1.82 6.83 -51.93 -0.35 1.47 16 17 C -0.11 -1.27 5.61 -26.64 -0.15 -1.42 16 18 C -0.12 -1.02 5.65 -26.77 -0.15 -1.17 16 19 C -0.11 -0.91 4.72 -26.63 -0.13 -1.03 16 20 C -0.11 -1.24 0.77 -155.26 -0.12 -1.36 16 21 C -0.14 -1.40 8.19 37.16 0.30 -1.10 16 22 C -0.13 -1.46 7.90 37.16 0.29 -1.17 16 23 C 0.35 5.79 5.86 -28.48 -0.17 5.62 16 24 O -0.43 -8.87 16.28 -12.74 -0.21 -9.08 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 6.39 -51.93 -0.33 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.64 5.97 -51.93 -0.31 0.33 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -32.90 322.21 -6.97 -39.87 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.29 Total: -1.76 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.23 Total: -4.28 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.81 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.91 Total: -30.82 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.90 -6.97 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.952 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds