Wall clock time and date at job start Mon Mar 30 2020 07:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47221 * 2 1 4 4 C 1.50703 * 109.46992 * 240.00335 * 2 1 3 5 5 H 1.07997 * 120.00565 * 240.00219 * 4 2 1 6 6 C 1.37881 * 119.99848 * 60.00155 * 4 2 1 7 7 N 1.31514 * 120.00146 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47240 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47376 * 120.00131 * 8 6 4 11 11 H 1.48503 * 109.47304 * 240.00256 * 8 6 4 12 12 C 1.50700 * 109.47061 * 120.00721 * 2 1 3 13 13 O 1.20823 * 119.99906 * 120.00019 * 12 2 1 14 14 O 1.34225 * 120.00016 * 299.99698 * 12 2 1 15 15 C 1.45202 * 117.00409 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.62087 * 330.38105 * 15 14 12 17 17 C 1.53226 * 109.62890 * 210.00069 * 15 14 12 18 18 C 1.52957 * 109.40481 * 185.46214 * 17 15 14 19 19 C 1.52965 * 109.75768 * 63.63378 * 18 17 15 20 20 C 1.53236 * 109.39757 * 296.29730 * 19 18 17 21 21 C 1.52999 * 109.68639 * 295.01506 * 20 19 18 22 22 C 1.53001 * 109.77352 * 174.50493 * 20 19 18 23 23 C 1.51268 * 108.48735 * 54.73537 * 20 19 18 24 24 O 1.20759 * 120.85192 * 128.58698 * 23 20 19 25 25 H 1.09004 * 109.47200 * 59.99149 * 1 2 3 26 26 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47220 * 299.99643 * 1 2 3 28 28 H 0.96997 * 120.00471 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.48271 * 65.48616 * 17 15 14 30 30 H 1.09000 * 109.49556 * 305.45318 * 17 15 14 31 31 H 1.09002 * 109.41418 * 183.70553 * 18 17 15 32 32 H 1.09004 * 109.41599 * 303.56741 * 18 17 15 33 33 H 1.08998 * 109.47758 * 56.34842 * 19 18 17 34 34 H 1.08992 * 109.48028 * 176.38621 * 19 18 17 35 35 H 1.09001 * 109.47065 * 179.01993 * 21 20 19 36 36 H 1.09004 * 109.47304 * 299.01509 * 21 20 19 37 37 H 1.09002 * 109.47401 * 59.01984 * 21 20 19 38 38 H 1.08997 * 109.47145 * 300.92480 * 22 20 19 39 39 H 1.08997 * 109.46978 * 60.93332 * 22 20 19 40 40 H 1.09002 * 109.47016 * 180.92493 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1462 -2.2867 -3.6041 10 1 1.1659 -1.5862 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 6 2.0323 -0.7106 1.2304 13 8 2.7269 -1.6929 1.1194 14 8 1.7081 -0.2521 2.4495 15 6 2.2277 -0.9861 3.5896 16 1 2.3492 -2.0363 3.3242 17 6 1.2560 -0.8620 4.7679 18 6 1.8701 -1.5203 6.0044 19 6 3.1401 -0.7715 6.4120 20 6 4.1833 -0.8937 5.2963 21 6 4.6079 -2.3558 5.1456 22 6 5.4046 -0.0360 5.6333 23 6 3.5630 -0.4091 4.0045 24 8 4.1194 0.4175 3.3223 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7080 1.1612 -3.4843 29 1 0.3181 -1.3588 4.5195 30 1 1.0660 0.1915 4.9733 31 1 1.1528 -1.4905 6.8246 32 1 2.1181 -2.5572 5.7774 33 1 2.9048 0.2798 6.5777 34 1 3.5384 -1.2040 7.3298 35 1 5.3368 -2.4413 4.3397 36 1 5.0546 -2.7024 6.0776 37 1 3.7351 -2.9655 4.9122 38 1 5.0982 1.0039 5.7467 39 1 5.8495 -0.3873 6.5642 40 1 6.1362 -0.1136 4.8291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:08 Heat of formation + Delta-G solvation = -167.575818 kcal Electronic energy + Delta-G solvation = -21527.631588 eV Core-core repulsion = 18305.942614 eV Total energy + Delta-G solvation = -3221.688975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.16957 -40.76463 -38.03293 -37.49680 -35.98648 -34.19972 -32.68752 -30.11132 -28.30806 -27.34070 -26.83893 -25.35335 -23.19008 -22.47916 -21.53528 -19.51558 -18.76821 -18.11804 -17.78186 -17.56364 -16.82679 -16.45378 -16.01939 -15.80028 -15.16995 -14.89925 -14.68378 -14.39825 -14.25342 -13.75143 -13.55177 -13.31490 -13.15106 -13.05159 -12.97807 -12.82851 -12.67650 -12.64852 -12.53697 -12.33057 -12.18482 -12.11857 -12.02816 -11.49814 -11.41372 -11.16344 -11.07388 -10.58472 -10.29842 -8.24321 -6.38455 0.75078 1.33120 1.38506 1.38969 1.52160 1.75278 2.39957 2.76773 3.05162 3.51873 3.62449 3.75608 3.83193 3.88354 4.07407 4.25400 4.30611 4.34154 4.61165 4.62315 4.67469 4.78913 4.82388 4.83752 4.88838 4.94358 4.96706 5.01501 5.10243 5.18654 5.18839 5.24779 5.32096 5.38834 5.47892 5.63455 5.83126 6.04169 6.31987 6.67527 6.94651 7.30294 8.82819 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031687 B = 0.004832 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.443304 B = 5792.747959 C = 6132.914835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.040 0.960 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.274 1.274 12 C 0.475 3.525 13 O -0.543 6.543 14 O -0.349 6.349 15 C 0.018 3.982 16 H 0.107 0.893 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.133 4.133 23 C 0.345 3.655 24 O -0.485 6.485 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.269 0.731 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -5.018 21.760 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.058 0.942 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.547 5.547 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.192 1.192 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.432 6.432 14 O -0.266 6.266 15 C -0.038 4.038 16 H 0.124 0.876 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.197 4.197 22 C -0.190 4.190 23 C 0.221 3.779 24 O -0.359 6.359 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.707 -4.750 21.266 21.857 hybrid contribution 0.534 -0.144 -1.493 1.592 sum 2.241 -4.895 19.773 20.492 Atomic orbital electron populations 1.21547 0.93756 1.00202 1.02072 1.18695 0.96394 0.95673 0.86243 0.94185 1.21250 1.32767 1.13277 0.90478 0.92725 1.25694 0.94815 0.95673 1.01675 1.69970 1.36578 1.23382 1.24817 0.85363 0.78495 0.78421 0.78529 1.20177 1.19180 1.19888 1.24902 0.75796 0.82311 0.84951 1.90436 1.37484 1.28133 1.87164 1.86661 1.69114 1.55875 1.14992 1.23854 0.95446 0.97915 0.86574 0.87587 1.21762 0.97487 1.03817 0.91153 1.21687 0.97500 1.00132 0.96119 1.21767 0.93241 1.02110 0.96884 1.21454 0.97842 0.98601 0.92492 1.21920 1.02001 0.91862 1.03894 1.21731 0.95778 0.99056 1.02483 1.26114 0.86126 0.78427 0.87201 1.90402 1.62534 1.28726 1.54256 0.90254 0.94687 0.93274 0.92130 0.88829 0.90326 0.86846 0.89736 0.91129 0.86684 0.94345 0.87512 0.91023 0.93030 0.88211 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.90 71.98 0.64 -5.19 16 2 C 0.05 2.73 2.74 -12.29 -0.03 2.69 16 3 H 0.04 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.54 -32.51 8.37 25.60 0.21 -32.29 16 5 H 0.05 3.45 6.76 -2.91 -0.02 3.43 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 8 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.47 24.60 7.14 71.24 0.51 25.11 16 13 O -0.54 -30.04 14.68 21.97 0.32 -29.72 16 14 O -0.35 -15.28 9.44 -45.26 -0.43 -15.71 16 15 C 0.02 0.59 2.46 30.10 0.07 0.66 16 16 H 0.11 3.58 6.83 -2.39 -0.02 3.57 16 17 C -0.10 -2.21 5.61 30.66 0.17 -2.04 16 18 C -0.12 -1.44 5.65 30.57 0.17 -1.27 16 19 C -0.10 -1.32 4.72 30.66 0.14 -1.18 16 20 C -0.10 -2.16 0.77 -52.67 -0.04 -2.20 16 21 C -0.14 -2.49 8.19 71.98 0.59 -1.90 16 22 C -0.13 -2.74 7.90 71.98 0.57 -2.17 16 23 C 0.35 11.55 5.86 29.46 0.17 11.72 16 24 O -0.49 -21.33 16.28 16.47 0.27 -21.06 16 25 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 26 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.92 6.39 -2.38 -0.02 0.91 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.20 5.97 -2.39 -0.01 1.18 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 0.97 8.04 -2.39 -0.02 0.95 16 Total: -1.00 -75.69 322.21 7.08 -68.61 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.02 Total: 8.96 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.63 Total: -6.38 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.24 Total: -52.18 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: 0.16 Total: -66.48 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.69 7.08 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.968 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds