Wall clock time and date at job start Mon Mar 30 2020 07:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.20829 * 120.00087 * 240.00160 * 12 2 1 14 14 O 1.34226 * 120.00092 * 59.99842 * 12 2 1 15 15 C 1.45204 * 117.00034 * 180.02562 * 14 12 2 16 16 H 1.08993 * 109.62482 * 29.61842 * 15 14 12 17 17 C 1.53231 * 109.62553 * 150.00241 * 15 14 12 18 18 C 1.52961 * 109.40446 * 174.34256 * 17 15 14 19 19 C 1.52967 * 109.81538 * 296.39894 * 18 17 15 20 20 C 1.53230 * 109.40196 * 63.59837 * 19 18 17 21 21 C 1.53001 * 109.62426 * 65.08601 * 20 19 18 22 22 C 1.53005 * 109.62571 * 185.46617 * 20 19 18 23 23 C 1.51266 * 109.62549 * 269.04356 * 15 14 12 24 24 O 1.20770 * 120.85110 * 8.92067 * 23 15 14 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.48122 * 294.32012 * 17 15 14 30 30 H 1.08999 * 109.48431 * 54.34735 * 17 15 14 31 31 H 1.08993 * 109.41349 * 56.50073 * 18 17 15 32 32 H 1.09002 * 109.41203 * 176.36553 * 18 17 15 33 33 H 1.09001 * 109.47872 * 183.57624 * 19 18 17 34 34 H 1.09002 * 109.47911 * 303.62218 * 19 18 17 35 35 H 1.09001 * 109.47365 * 60.00090 * 21 20 19 36 36 H 1.09010 * 109.46616 * 179.97438 * 21 20 19 37 37 H 1.08997 * 109.47029 * 299.99552 * 21 20 19 38 38 H 1.08995 * 109.46738 * 59.99883 * 22 20 19 39 39 H 1.08997 * 109.46914 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.46428 * 300.00197 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4496 15 6 2.2267 -0.9864 -3.5897 16 1 2.3475 -2.0366 -3.3243 17 6 1.2547 -0.8617 -4.7677 18 6 1.8699 -1.5164 -6.0056 19 6 3.1392 -0.7659 -6.4125 20 6 4.1820 -0.8870 -5.2964 21 6 4.6093 -2.3487 -5.1488 22 6 5.4010 -0.0271 -5.6365 23 6 3.5609 -0.4062 -4.0036 24 8 4.1159 0.4201 -3.3197 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7091 1.1614 3.4844 29 1 0.3178 -1.3606 -4.5203 30 1 1.0629 0.1919 -4.9708 31 1 2.1186 -2.5536 -5.7811 32 1 1.1530 -1.4851 -6.8261 33 1 3.5378 -1.1970 -7.3309 34 1 2.9029 0.2855 -6.5768 35 1 5.0410 -2.6976 -6.0869 36 1 5.3513 -2.4318 -4.3546 37 1 3.7404 -2.9578 -4.8998 38 1 5.0949 1.0144 -5.7345 39 1 6.1412 -0.1155 -4.8413 40 1 5.8353 -0.3682 -6.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:12 Heat of formation + Delta-G solvation = -148.839369 kcal Electronic energy + Delta-G solvation = -21526.688276 eV Core-core repulsion = 18305.811774 eV Total energy + Delta-G solvation = -3220.876501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78207 -39.09567 -36.87263 -35.77620 -33.85859 -33.15897 -30.61677 -29.01301 -27.46996 -25.88569 -25.17681 -23.52438 -21.87226 -21.52097 -19.72477 -18.38898 -16.87827 -16.32287 -16.06782 -15.99866 -15.49473 -15.02639 -14.43517 -14.30407 -13.93062 -13.77552 -13.38875 -12.95286 -12.62699 -12.53595 -12.35299 -12.22630 -12.03386 -11.78524 -11.57079 -11.44090 -11.15406 -11.03004 -10.86872 -10.73956 -10.68288 -10.62623 -10.54553 -10.28324 -10.02824 -9.11209 -9.04379 -9.00827 -8.41345 -6.06959 -4.12194 2.03769 3.23231 3.33963 3.35495 3.37597 3.45683 4.00080 4.42615 4.44272 4.51903 4.62190 4.81437 4.93891 5.05131 5.20547 5.23731 5.26406 5.43432 5.45968 5.55986 5.62657 5.69765 5.69862 5.75008 5.81754 5.92726 5.99071 6.06330 6.16431 6.21527 6.69031 6.88370 6.90076 7.19516 7.47421 7.59813 7.76720 7.97598 8.17311 8.85418 8.96161 9.52714 11.00590 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004832 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.047493 B = 5793.048559 C = 6132.672295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.469 3.531 13 O -0.518 6.518 14 O -0.345 6.345 15 C 0.035 3.965 16 H 0.110 0.890 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.134 4.134 23 C 0.352 3.648 24 O -0.426 6.426 25 H 0.096 0.904 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -3.795 -19.343 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.405 6.405 14 O -0.263 6.263 15 C -0.021 4.021 16 H 0.128 0.872 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.197 4.197 22 C -0.191 4.191 23 C 0.224 3.776 24 O -0.296 6.296 25 H 0.115 0.885 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.212 -3.525 -18.807 19.262 hybrid contribution 0.389 -0.569 0.814 1.067 sum 2.601 -4.094 -17.992 18.635 Atomic orbital electron populations 1.21736 0.95580 0.99991 1.01772 1.18759 0.94818 0.97079 0.85352 0.91714 1.21082 1.31918 1.13213 0.88774 0.90747 1.24933 0.94922 0.95024 0.99088 1.69868 1.36530 1.22758 1.23925 0.86428 0.79323 0.79618 0.81329 1.20098 1.21183 1.20093 1.25421 0.76283 0.82923 0.83966 1.90469 1.36493 1.27071 1.86432 1.86753 1.69311 1.55353 1.14894 1.23148 0.93376 0.98708 0.86906 0.87246 1.21598 0.98118 1.03074 0.91908 1.21617 0.97066 1.00208 0.97199 1.21693 0.94202 1.01498 0.97054 1.21341 0.97004 0.98046 0.94599 1.21856 1.02125 0.92916 1.02792 1.21704 0.96416 0.99340 1.01642 1.25218 0.86631 0.79918 0.85855 1.90423 1.61308 1.25871 1.52023 0.88514 0.95784 0.94991 0.92650 0.89831 0.90283 0.90794 0.90299 0.90445 0.91149 0.91243 0.91919 0.91557 0.92153 0.91818 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.90 37.16 0.33 -2.90 16 2 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16 3 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 4 C -0.51 -14.88 8.37 -34.44 -0.29 -15.17 16 5 H 0.07 2.24 6.76 -52.49 -0.35 1.89 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.47 11.68 7.13 36.01 0.26 11.93 16 13 O -0.52 -13.71 14.68 -18.75 -0.28 -13.98 16 14 O -0.35 -7.34 9.43 -45.67 -0.43 -7.77 16 15 C 0.04 0.58 2.46 -27.49 -0.07 0.52 16 16 H 0.11 1.83 6.81 -51.93 -0.35 1.47 16 17 C -0.11 -1.27 5.61 -26.63 -0.15 -1.42 16 18 C -0.12 -1.02 5.65 -26.77 -0.15 -1.17 16 19 C -0.11 -0.91 4.71 -26.63 -0.13 -1.04 16 20 C -0.11 -1.24 0.77 -155.26 -0.12 -1.36 16 21 C -0.14 -1.40 8.17 37.16 0.30 -1.10 16 22 C -0.13 -1.46 7.89 37.16 0.29 -1.16 16 23 C 0.35 5.80 5.86 -28.48 -0.17 5.63 16 24 O -0.43 -8.87 16.30 -12.85 -0.21 -9.08 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 26 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.57 6.42 -51.93 -0.33 0.24 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 37 H 0.07 0.64 5.98 -51.93 -0.31 0.33 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -32.84 322.23 -6.98 -39.82 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.29 Total: -1.72 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.23 Total: -4.28 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.81 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.92 Total: -30.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.84 -6.98 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.020 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds