Wall clock time and date at job start Mon Mar 30 2020 07:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.20829 * 120.00087 * 240.00160 * 12 2 1 14 14 O 1.34226 * 120.00092 * 59.99842 * 12 2 1 15 15 C 1.45204 * 117.00034 * 180.02562 * 14 12 2 16 16 H 1.08993 * 109.62482 * 29.61842 * 15 14 12 17 17 C 1.53231 * 109.62553 * 150.00241 * 15 14 12 18 18 C 1.52961 * 109.40446 * 174.34256 * 17 15 14 19 19 C 1.52967 * 109.81538 * 296.39894 * 18 17 15 20 20 C 1.53230 * 109.40196 * 63.59837 * 19 18 17 21 21 C 1.53001 * 109.62426 * 65.08601 * 20 19 18 22 22 C 1.53005 * 109.62571 * 185.46617 * 20 19 18 23 23 C 1.51266 * 109.62549 * 269.04356 * 15 14 12 24 24 O 1.20770 * 120.85110 * 8.92067 * 23 15 14 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.48122 * 294.32012 * 17 15 14 30 30 H 1.08999 * 109.48431 * 54.34735 * 17 15 14 31 31 H 1.08993 * 109.41349 * 56.50073 * 18 17 15 32 32 H 1.09002 * 109.41203 * 176.36553 * 18 17 15 33 33 H 1.09001 * 109.47872 * 183.57624 * 19 18 17 34 34 H 1.09002 * 109.47911 * 303.62218 * 19 18 17 35 35 H 1.09001 * 109.47365 * 60.00090 * 21 20 19 36 36 H 1.09010 * 109.46616 * 179.97438 * 21 20 19 37 37 H 1.08997 * 109.47029 * 299.99552 * 21 20 19 38 38 H 1.08995 * 109.46738 * 59.99883 * 22 20 19 39 39 H 1.08997 * 109.46914 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.46428 * 300.00197 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4496 15 6 2.2267 -0.9864 -3.5897 16 1 2.3475 -2.0366 -3.3243 17 6 1.2547 -0.8617 -4.7677 18 6 1.8699 -1.5164 -6.0056 19 6 3.1392 -0.7659 -6.4125 20 6 4.1820 -0.8870 -5.2964 21 6 4.6093 -2.3487 -5.1488 22 6 5.4010 -0.0271 -5.6365 23 6 3.5609 -0.4062 -4.0036 24 8 4.1159 0.4201 -3.3197 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7091 1.1614 3.4844 29 1 0.3178 -1.3606 -4.5203 30 1 1.0629 0.1919 -4.9708 31 1 2.1186 -2.5536 -5.7811 32 1 1.1530 -1.4851 -6.8261 33 1 3.5378 -1.1970 -7.3309 34 1 2.9029 0.2855 -6.5768 35 1 5.0410 -2.6976 -6.0869 36 1 5.3513 -2.4318 -4.3546 37 1 3.7404 -2.9578 -4.8998 38 1 5.0949 1.0144 -5.7345 39 1 6.1412 -0.1155 -4.8413 40 1 5.8353 -0.3682 -6.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:12 Heat of formation + Delta-G solvation = -167.525345 kcal Electronic energy + Delta-G solvation = -21527.498560 eV Core-core repulsion = 18305.811774 eV Total energy + Delta-G solvation = -3221.686786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16840 -40.76009 -38.03195 -37.49644 -35.98350 -34.19935 -32.68632 -30.11171 -28.30718 -27.33619 -26.83578 -25.35161 -23.19153 -22.47830 -21.53553 -19.51484 -18.76587 -18.11101 -17.77828 -17.56379 -16.82600 -16.45199 -16.01760 -15.80268 -15.17129 -14.89680 -14.67783 -14.39570 -14.25225 -13.74225 -13.55490 -13.31274 -13.14873 -13.04678 -12.97665 -12.84371 -12.67502 -12.66077 -12.53477 -12.32933 -12.18559 -12.09722 -12.02552 -11.49469 -11.41266 -11.18247 -11.07203 -10.58199 -10.30004 -8.23803 -6.38121 0.74977 1.33332 1.38718 1.41947 1.49361 1.75134 2.40063 2.76720 3.05678 3.52029 3.62372 3.75669 3.83250 3.88418 4.07507 4.25487 4.30616 4.34116 4.61271 4.62381 4.67635 4.78910 4.82325 4.83777 4.88901 4.94431 4.96635 5.01574 5.10395 5.18672 5.18819 5.24725 5.32079 5.38873 5.47838 5.63338 5.83172 6.04352 6.31999 6.67182 6.94660 7.30396 8.82920 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004832 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.047493 B = 5793.048559 C = 6132.672295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 H 0.040 0.960 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.269 1.269 12 C 0.475 3.525 13 O -0.543 6.543 14 O -0.350 6.350 15 C 0.018 3.982 16 H 0.107 0.893 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.133 4.133 23 C 0.345 3.655 24 O -0.485 6.485 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -5.028 -21.765 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.058 0.942 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.194 1.194 12 C 0.320 3.680 13 O -0.432 6.432 14 O -0.267 6.267 15 C -0.038 4.038 16 H 0.125 0.875 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.197 4.197 22 C -0.190 4.190 23 C 0.222 3.778 24 O -0.359 6.359 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.708 -4.754 -21.268 21.859 hybrid contribution 0.542 -0.155 1.485 1.588 sum 2.250 -4.909 -19.783 20.506 Atomic orbital electron populations 1.21547 0.93771 1.00184 1.02066 1.18686 0.96377 0.95657 0.86227 0.94213 1.21193 1.32928 1.13376 0.90490 0.92688 1.25692 0.94798 0.95664 1.01655 1.69955 1.36508 1.23290 1.24934 0.85476 0.78530 0.78835 0.78010 1.20262 1.19485 1.19419 1.24903 0.75793 0.82312 0.84951 1.90435 1.37480 1.28126 1.87169 1.86663 1.69170 1.55831 1.14998 1.23858 0.95441 0.97910 0.86563 0.87548 1.21762 0.97481 1.03822 0.91156 1.21683 0.97507 1.00151 0.96095 1.21775 0.93262 1.02093 0.96880 1.21451 0.97864 0.98623 0.92488 1.21920 1.01914 0.91858 1.03974 1.21731 0.95773 0.99005 1.02526 1.26105 0.86091 0.78418 0.87229 1.90406 1.62521 1.28744 1.54247 0.90249 0.93287 0.94706 0.92113 0.88823 0.90336 0.89733 0.86865 0.86668 0.91150 0.87497 0.94301 0.91089 0.93076 0.94286 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.90 71.98 0.64 -5.19 16 2 C 0.05 2.76 2.74 -12.29 -0.03 2.73 16 3 H 0.04 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.54 -32.62 8.37 25.60 0.21 -32.40 16 5 H 0.05 3.45 6.76 -2.91 -0.02 3.44 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -52.43 11.32 21.45 0.24 -52.19 16 8 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.47 24.59 7.13 71.24 0.51 25.10 16 13 O -0.54 -29.98 14.68 21.95 0.32 -29.66 16 14 O -0.35 -15.29 9.43 -45.24 -0.43 -15.71 16 15 C 0.02 0.60 2.46 30.11 0.07 0.67 16 16 H 0.11 3.59 6.81 -2.39 -0.02 3.57 16 17 C -0.10 -2.21 5.61 30.66 0.17 -2.04 16 18 C -0.12 -1.44 5.65 30.57 0.17 -1.27 16 19 C -0.10 -1.32 4.71 30.66 0.14 -1.18 16 20 C -0.10 -2.17 0.77 -52.67 -0.04 -2.21 16 21 C -0.14 -2.49 8.17 71.98 0.59 -1.90 16 22 C -0.13 -2.73 7.89 71.98 0.57 -2.16 16 23 C 0.35 11.56 5.86 29.46 0.17 11.73 16 24 O -0.49 -21.34 16.30 16.54 0.27 -21.07 16 25 H 0.08 4.21 6.07 -2.39 -0.01 4.19 16 26 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 27 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 0.92 6.42 -2.39 -0.02 0.91 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.07 1.19 5.98 -2.39 -0.01 1.18 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 0.97 8.07 -2.39 -0.02 0.96 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.53 322.23 7.08 -68.44 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.02 Total: 9.17 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 3.63 Total: -6.42 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.24 Total: -52.19 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: 0.17 Total: -66.45 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.53 7.08 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.081 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds