Wall clock time and date at job start Mon Mar 30 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47494 * 2 1 4 4 C 1.50701 * 109.47040 * 120.00162 * 2 1 3 5 5 H 1.08002 * 120.00283 * 119.99808 * 4 2 1 6 6 C 1.37879 * 120.00209 * 299.99896 * 4 2 1 7 7 N 1.31519 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46999 * 60.00194 * 8 6 4 10 10 H 1.48498 * 109.46860 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47234 * 299.99939 * 8 6 4 12 12 C 1.50701 * 109.47010 * 239.99982 * 2 1 3 13 13 O 1.20830 * 119.99748 * 240.00569 * 12 2 1 14 14 O 1.34224 * 120.00058 * 60.00306 * 12 2 1 15 15 C 1.45205 * 116.99987 * 180.02562 * 14 12 2 16 16 H 1.08995 * 109.62337 * 329.62254 * 15 14 12 17 17 C 1.53088 * 109.79505 * 209.09766 * 15 14 12 18 18 C 1.52965 * 109.47453 * 185.52584 * 17 15 14 19 19 C 1.52957 * 109.75768 * 63.63992 * 18 17 15 20 20 C 1.53223 * 109.40888 * 296.43474 * 19 18 17 21 21 C 1.52992 * 109.63022 * 174.34244 * 20 19 18 22 22 C 1.53002 * 109.62790 * 294.72574 * 20 19 18 23 23 C 1.51272 * 108.53406 * 54.62894 * 20 19 18 24 24 O 1.20758 * 120.85229 * 128.68147 * 23 20 19 25 25 H 1.08998 * 109.46697 * 300.00052 * 1 2 3 26 26 H 1.09005 * 109.46948 * 59.99866 * 1 2 3 27 27 H 1.08995 * 109.46994 * 180.02562 * 1 2 3 28 28 H 0.96994 * 120.00144 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.38594 * 65.56619 * 17 15 14 30 30 H 1.08994 * 109.51013 * 305.56273 * 17 15 14 31 31 H 1.09002 * 109.41499 * 303.56866 * 18 17 15 32 32 H 1.09004 * 109.40969 * 183.71012 * 18 17 15 33 33 H 1.09005 * 109.48472 * 56.42044 * 19 18 17 34 34 H 1.09002 * 109.48310 * 176.44217 * 19 18 17 35 35 H 1.09007 * 109.47141 * 60.00493 * 21 20 19 36 36 H 1.09003 * 109.47210 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47116 * 300.00223 * 21 20 19 38 38 H 1.09008 * 109.47143 * 59.99294 * 22 20 19 39 39 H 1.09000 * 109.47333 * 179.97438 * 22 20 19 40 40 H 1.09004 * 109.46969 * 300.00012 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 3.8063 -1.1211 4.0082 10 1 1.8269 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7081 -0.2518 -2.4496 15 6 2.2268 -0.9864 -3.5897 16 1 3.1829 -1.4400 -3.3286 17 6 2.4138 -0.0375 -4.7763 18 6 2.8283 -0.8401 -6.0108 19 6 1.7059 -1.8027 -6.4024 20 6 1.4911 -2.8194 -5.2764 21 6 0.2790 -3.6954 -5.5992 22 6 2.7359 -3.6974 -5.1324 23 6 1.2445 -2.0655 -3.9883 24 8 0.2883 -2.3190 -3.2958 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7090 1.1614 3.4844 29 1 3.1896 0.6904 -4.5387 30 1 1.4771 0.4820 -4.9781 31 1 3.7313 -1.4082 -5.7872 32 1 3.0250 -0.1574 -6.8374 33 1 0.7859 -1.2413 -6.5657 34 1 1.9794 -2.3266 -7.3182 35 1 0.4524 -4.2245 -6.5364 36 1 0.1289 -4.4179 -4.7970 37 1 -0.6073 -3.0683 -5.6946 38 1 3.5965 -3.0716 -4.8958 39 1 2.5806 -4.4193 -4.3306 40 1 2.9176 -4.2264 -6.0679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:15 Heat of formation + Delta-G solvation = -148.592101 kcal Electronic energy + Delta-G solvation = -21589.865385 eV Core-core repulsion = 18368.999606 eV Total energy + Delta-G solvation = -3220.865779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78112 -39.08662 -36.86480 -35.77419 -33.84538 -33.16250 -30.59918 -29.00844 -27.46570 -25.88205 -25.15014 -23.50781 -21.88735 -21.50040 -19.69878 -18.40306 -16.85515 -16.45621 -16.03819 -15.94479 -15.36804 -15.04688 -14.38014 -14.36798 -13.99052 -13.69338 -13.40015 -12.97273 -12.67907 -12.54067 -12.31312 -12.23493 -11.91535 -11.70158 -11.64875 -11.46895 -11.15129 -10.99872 -10.83721 -10.71310 -10.64667 -10.62257 -10.58394 -10.24922 -10.02225 -9.11656 -9.01221 -8.99736 -8.40706 -6.06553 -4.11888 2.05291 3.21839 3.35127 3.36581 3.37616 3.46046 3.99827 4.42891 4.44457 4.52275 4.62768 4.81968 4.93951 5.05332 5.20782 5.24251 5.26515 5.43639 5.46454 5.56212 5.62913 5.69783 5.70188 5.75389 5.81824 5.92933 5.99164 6.06911 6.16930 6.21862 6.74722 6.94793 6.96476 7.20723 7.50538 7.61315 7.79555 7.98673 8.18489 8.85707 8.96382 9.53002 11.00879 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.004800 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.829285 B = 5831.399238 C = 5974.575261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.469 3.531 13 O -0.518 6.518 14 O -0.345 6.345 15 C 0.036 3.964 16 H 0.109 0.891 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.139 4.139 23 C 0.351 3.649 24 O -0.425 6.425 25 H 0.095 0.905 26 H 0.022 0.978 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -3.326 -19.333 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.550 4.550 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.405 6.405 14 O -0.263 6.263 15 C -0.021 4.021 16 H 0.127 0.873 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.191 4.191 22 C -0.197 4.197 23 C 0.223 3.777 24 O -0.294 6.294 25 H 0.114 0.886 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.055 -3.654 -18.792 19.254 hybrid contribution 0.425 -0.546 0.807 1.063 sum 2.481 -4.200 -17.985 18.635 Atomic orbital electron populations 1.21704 0.95405 1.00260 1.01524 1.18759 0.94998 0.96816 0.85326 0.91864 1.21086 1.31929 1.13192 0.88787 0.90758 1.24933 0.94920 0.95030 0.99082 1.69876 1.36489 1.22798 1.23912 0.86428 0.79222 0.79709 0.81335 1.20105 1.21188 1.20099 1.25437 0.76019 0.83220 0.83956 1.90469 1.36814 1.26738 1.86437 1.86747 1.70295 1.54390 1.14896 1.23114 0.98640 0.93426 0.86931 0.87322 1.21569 1.03643 0.97656 0.91831 1.21615 0.98893 0.98313 0.97240 1.21688 0.99477 0.96283 0.97002 1.21337 0.98358 0.96649 0.94653 1.21705 0.96228 0.99487 1.01689 1.21849 0.95695 0.99329 1.02777 1.25215 0.84678 0.82042 0.85791 1.90425 1.27329 1.60447 1.51220 0.88642 0.95849 0.94853 0.92662 0.89851 0.90279 0.90799 0.90289 0.91158 0.90460 0.91926 0.91820 0.92159 0.91579 0.91923 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.90 37.16 0.33 -3.02 16 2 C 0.06 1.60 2.74 -92.92 -0.25 1.35 16 3 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 4 C -0.51 -14.88 8.37 -34.44 -0.29 -15.17 16 5 H 0.07 2.24 6.76 -52.49 -0.35 1.89 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.82 16 8 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.47 11.66 7.09 36.01 0.26 11.92 16 13 O -0.52 -13.71 14.69 -18.75 -0.28 -13.98 16 14 O -0.35 -7.34 9.45 -45.67 -0.43 -7.77 16 15 C 0.04 0.59 2.45 -27.56 -0.07 0.52 16 16 H 0.11 1.81 6.84 -51.93 -0.36 1.45 16 17 C -0.11 -1.26 5.60 -26.70 -0.15 -1.41 16 18 C -0.12 -1.02 5.66 -26.77 -0.15 -1.17 16 19 C -0.11 -0.91 4.70 -26.64 -0.13 -1.04 16 20 C -0.11 -1.25 0.77 -155.27 -0.12 -1.37 16 21 C -0.13 -1.47 7.87 37.15 0.29 -1.18 16 22 C -0.14 -1.41 8.19 37.16 0.30 -1.10 16 23 C 0.35 5.79 5.85 -28.47 -0.17 5.62 16 24 O -0.42 -8.85 16.25 -12.85 -0.21 -9.05 16 25 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 26 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.57 6.42 -51.93 -0.33 0.23 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.64 6.01 -51.92 -0.31 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -32.88 322.22 -6.98 -39.87 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.30 Total: -1.68 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.23 Total: -4.40 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.92 Total: -30.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.88 -6.98 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.725 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds