Wall clock time and date at job start Mon Mar 30 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47494 * 2 1 4 4 C 1.50701 * 109.47040 * 120.00162 * 2 1 3 5 5 H 1.08002 * 120.00283 * 119.99808 * 4 2 1 6 6 C 1.37879 * 120.00209 * 299.99896 * 4 2 1 7 7 N 1.31519 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46999 * 60.00194 * 8 6 4 10 10 H 1.48498 * 109.46860 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47234 * 299.99939 * 8 6 4 12 12 C 1.50701 * 109.47010 * 239.99982 * 2 1 3 13 13 O 1.20830 * 119.99748 * 240.00569 * 12 2 1 14 14 O 1.34224 * 120.00058 * 60.00306 * 12 2 1 15 15 C 1.45205 * 116.99987 * 180.02562 * 14 12 2 16 16 H 1.08995 * 109.62337 * 329.62254 * 15 14 12 17 17 C 1.53088 * 109.79505 * 209.09766 * 15 14 12 18 18 C 1.52965 * 109.47453 * 185.52584 * 17 15 14 19 19 C 1.52957 * 109.75768 * 63.63992 * 18 17 15 20 20 C 1.53223 * 109.40888 * 296.43474 * 19 18 17 21 21 C 1.52992 * 109.63022 * 174.34244 * 20 19 18 22 22 C 1.53002 * 109.62790 * 294.72574 * 20 19 18 23 23 C 1.51272 * 108.53406 * 54.62894 * 20 19 18 24 24 O 1.20758 * 120.85229 * 128.68147 * 23 20 19 25 25 H 1.08998 * 109.46697 * 300.00052 * 1 2 3 26 26 H 1.09005 * 109.46948 * 59.99866 * 1 2 3 27 27 H 1.08995 * 109.46994 * 180.02562 * 1 2 3 28 28 H 0.96994 * 120.00144 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.38594 * 65.56619 * 17 15 14 30 30 H 1.08994 * 109.51013 * 305.56273 * 17 15 14 31 31 H 1.09002 * 109.41499 * 303.56866 * 18 17 15 32 32 H 1.09004 * 109.40969 * 183.71012 * 18 17 15 33 33 H 1.09005 * 109.48472 * 56.42044 * 19 18 17 34 34 H 1.09002 * 109.48310 * 176.44217 * 19 18 17 35 35 H 1.09007 * 109.47141 * 60.00493 * 21 20 19 36 36 H 1.09003 * 109.47210 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47116 * 300.00223 * 21 20 19 38 38 H 1.09008 * 109.47143 * 59.99294 * 22 20 19 39 39 H 1.09000 * 109.47333 * 179.97438 * 22 20 19 40 40 H 1.09004 * 109.46969 * 300.00012 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 3.8063 -1.1211 4.0082 10 1 1.8269 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7081 -0.2518 -2.4496 15 6 2.2268 -0.9864 -3.5897 16 1 3.1829 -1.4400 -3.3286 17 6 2.4138 -0.0375 -4.7763 18 6 2.8283 -0.8401 -6.0108 19 6 1.7059 -1.8027 -6.4024 20 6 1.4911 -2.8194 -5.2764 21 6 0.2790 -3.6954 -5.5992 22 6 2.7359 -3.6974 -5.1324 23 6 1.2445 -2.0655 -3.9883 24 8 0.2883 -2.3190 -3.2958 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7090 1.1614 3.4844 29 1 3.1896 0.6904 -4.5387 30 1 1.4771 0.4820 -4.9781 31 1 3.7313 -1.4082 -5.7872 32 1 3.0250 -0.1574 -6.8374 33 1 0.7859 -1.2413 -6.5657 34 1 1.9794 -2.3266 -7.3182 35 1 0.4524 -4.2245 -6.5364 36 1 0.1289 -4.4179 -4.7970 37 1 -0.6073 -3.0683 -5.6946 38 1 3.5965 -3.0716 -4.8958 39 1 2.5806 -4.4193 -4.3306 40 1 2.9176 -4.2264 -6.0679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:15 Heat of formation + Delta-G solvation = -167.205518 kcal Electronic energy + Delta-G solvation = -21590.672523 eV Core-core repulsion = 18368.999606 eV Total energy + Delta-G solvation = -3221.672917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16676 -40.74867 -38.02304 -37.49408 -35.98699 -34.20435 -32.68809 -30.10992 -28.30446 -27.34756 -26.83658 -25.36074 -23.20066 -22.47539 -21.50697 -19.53654 -18.76394 -18.10910 -17.93276 -17.34464 -16.81112 -16.36579 -16.09463 -15.87339 -15.17685 -14.81537 -14.74635 -14.38987 -14.27556 -13.68648 -13.54934 -13.30712 -13.19871 -13.05049 -12.96372 -12.83587 -12.68067 -12.67018 -12.51958 -12.37540 -12.18593 -12.09838 -12.01478 -11.49360 -11.41276 -11.19204 -11.07999 -10.57725 -10.28529 -8.23748 -6.37828 0.76758 1.32858 1.39247 1.42217 1.49628 1.75804 2.40215 2.77202 3.05861 3.52365 3.63101 3.76007 3.83632 3.88482 4.07665 4.25962 4.30567 4.34188 4.59474 4.61859 4.67790 4.78759 4.81959 4.82539 4.88579 4.92492 4.96539 5.01429 5.10093 5.18628 5.19049 5.24839 5.30919 5.38698 5.47799 5.62272 5.79447 6.02975 6.33589 6.67300 6.94959 7.30589 8.83049 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.004800 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.829285 B = 5831.399238 C = 5974.575261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.474 3.526 13 O -0.543 6.543 14 O -0.350 6.350 15 C 0.018 3.982 16 H 0.106 0.894 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.133 4.133 22 C -0.139 4.139 23 C 0.345 3.655 24 O -0.482 6.482 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.018 0.982 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -3.451 -21.700 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.033 3.967 3 H 0.073 0.927 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.432 6.432 14 O -0.267 6.267 15 C -0.037 4.037 16 H 0.124 0.876 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.190 4.190 22 C -0.196 4.196 23 C 0.221 3.779 24 O -0.356 6.356 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.087 -3.753 -21.197 21.747 hybrid contribution 0.102 -0.481 1.461 1.541 sum 3.189 -4.233 -19.736 20.435 Atomic orbital electron populations 1.21514 0.94828 0.99287 1.01721 1.18683 0.95502 0.96352 0.86210 0.92717 1.21190 1.32941 1.13350 0.90476 0.92697 1.25685 0.94791 0.95660 1.01632 1.69951 1.36434 1.23329 1.24951 0.85478 0.78881 0.78473 0.78036 1.19527 1.19480 1.20200 1.24912 0.75553 0.82589 0.84949 1.90437 1.37946 1.27646 1.87173 1.86656 1.70152 1.54861 1.15003 1.23822 0.98371 0.94948 0.86604 0.87639 1.21734 1.04165 0.97314 0.91029 1.21680 0.98971 0.98582 0.96166 1.21769 0.99783 0.95676 0.96785 1.21445 0.99173 0.97203 0.92615 1.21730 0.95777 0.98983 1.02535 1.21914 0.94928 0.98877 1.03912 1.26083 0.83246 0.81476 0.87128 1.90406 1.29713 1.62053 1.53423 0.89943 0.93942 0.96264 0.92097 0.88875 0.90322 0.89753 0.86868 0.91146 0.86708 0.88251 0.94294 0.93072 0.91111 0.94318 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.90 71.98 0.64 -5.47 16 2 C 0.05 2.86 2.74 -12.28 -0.03 2.82 16 3 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 4 C -0.54 -32.52 8.37 25.60 0.21 -32.30 16 5 H 0.05 3.44 6.76 -2.91 -0.02 3.42 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -52.24 11.32 21.45 0.24 -51.99 16 8 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.47 24.53 7.09 71.24 0.51 25.03 16 13 O -0.54 -29.96 14.69 21.95 0.32 -29.64 16 14 O -0.35 -15.27 9.45 -45.22 -0.43 -15.69 16 15 C 0.02 0.60 2.45 30.06 0.07 0.68 16 16 H 0.11 3.56 6.84 -2.39 -0.02 3.54 16 17 C -0.10 -2.22 5.60 30.61 0.17 -2.04 16 18 C -0.12 -1.44 5.66 30.57 0.17 -1.27 16 19 C -0.10 -1.33 4.70 30.65 0.14 -1.18 16 20 C -0.10 -2.17 0.77 -52.67 -0.04 -2.21 16 21 C -0.13 -2.73 7.87 71.98 0.57 -2.17 16 22 C -0.14 -2.49 8.19 71.98 0.59 -1.90 16 23 C 0.34 11.50 5.85 29.47 0.17 11.67 16 24 O -0.48 -21.07 16.25 16.58 0.27 -20.80 16 25 H 0.08 4.55 6.07 -2.39 -0.01 4.54 16 26 H 0.04 2.00 8.11 -2.38 -0.02 1.99 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 0.92 6.42 -2.39 -0.02 0.91 16 32 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.04 0.97 8.07 -2.39 -0.02 0.96 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.19 6.01 -2.38 -0.01 1.18 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -75.02 322.22 7.08 -67.94 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.02 Total: 9.42 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 3.63 Total: -6.61 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.24 Total: -51.99 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: 0.16 Total: -66.13 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.02 7.08 -67.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.267 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds