Wall clock time and date at job start Mon Mar 30 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 110.41806 * 2 1 4 4 O 1.44433 * 110.37195 * 237.69156 * 2 1 3 5 5 C 1.44422 * 105.27452 * 281.68016 * 4 2 1 6 6 C 1.54481 * 104.80535 * 319.49061 * 5 4 2 7 7 H 1.09000 * 117.84569 * 163.13074 * 6 5 4 8 8 C 1.53004 * 118.06319 * 321.13142 * 6 5 4 9 9 C 1.53000 * 60.65592 * 90.40907 * 8 6 5 10 10 C 1.50693 * 120.25005 * 112.13905 * 9 8 6 11 11 O 1.20833 * 119.99711 * 288.80833 * 10 9 8 12 12 O 1.34224 * 120.00413 * 108.80913 * 10 9 8 13 13 C 1.45201 * 117.00400 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47119 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46992 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46973 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00587 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99711 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00000 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46750 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46938 * 120.00209 * 20 18 16 23 23 H 1.48503 * 109.47020 * 240.00242 * 20 18 16 24 24 H 1.08998 * 109.47686 * 297.68742 * 1 2 3 25 25 H 1.09000 * 109.47163 * 57.68945 * 1 2 3 26 26 H 1.09003 * 109.47577 * 177.68870 * 1 2 3 27 27 H 1.09001 * 109.47320 * 182.30782 * 3 2 1 28 28 H 1.09005 * 109.47541 * 302.30984 * 3 2 1 29 29 H 1.09005 * 109.47229 * 62.31044 * 3 2 1 30 30 H 1.08995 * 110.37333 * 200.65712 * 5 4 2 31 31 H 1.08999 * 110.46531 * 78.36420 * 5 4 2 32 32 H 1.08999 * 117.43329 * 342.72698 * 8 6 5 33 33 H 1.09002 * 117.43335 * 198.08658 * 8 6 5 34 34 H 1.09008 * 109.46871 * 299.99981 * 13 12 10 35 35 H 1.08997 * 109.46840 * 59.99630 * 13 12 10 36 36 H 1.08999 * 109.47218 * 299.99565 * 14 13 12 37 37 H 1.08994 * 109.47190 * 59.99915 * 14 13 12 38 38 H 1.08999 * 109.46856 * 299.99876 * 15 14 13 39 39 H 1.09006 * 109.47018 * 59.99581 * 15 14 13 40 40 H 0.96999 * 120.00346 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0637 1.4338 0.0000 4 8 2.0328 -0.7237 -1.1444 5 6 1.9008 -2.1199 -0.7996 6 6 2.3173 -2.2008 0.6858 7 1 2.0363 -3.0930 1.2455 8 6 3.4893 -1.3352 1.1529 9 6 2.0677 -0.7740 1.2240 10 6 1.4186 -0.5176 2.5595 11 8 1.0728 -1.4460 3.2513 12 8 1.2246 0.7420 2.9807 13 6 0.5943 0.9138 4.2775 14 6 0.4574 2.4065 4.5842 15 6 -0.2073 2.5875 5.9503 16 6 -0.3416 4.0577 6.2527 17 1 0.0121 4.7898 5.5418 18 6 -0.9161 4.4683 7.4369 19 7 -1.3465 3.5769 8.3028 20 14 -1.0820 6.2908 7.8121 21 1 -0.5246 7.0808 6.6850 22 1 -2.5163 6.6304 7.9925 23 1 -0.3374 6.6096 9.0568 24 1 -0.3634 0.4775 0.9099 25 1 -0.3633 0.5493 -0.8685 26 1 -0.3634 -1.0268 -0.0414 27 1 3.1528 1.4161 -0.0414 28 1 1.6757 1.9660 -0.8686 29 1 1.7429 1.9409 0.9100 30 1 2.5659 -2.7269 -1.4137 31 1 0.8683 -2.4469 -0.9224 32 1 4.1513 -0.9307 0.3873 33 1 3.9700 -1.6058 2.0931 34 1 -0.3938 0.4537 4.2650 35 1 1.2063 0.4395 5.0446 36 1 1.4452 2.8670 4.5965 37 1 -0.1548 2.8804 3.8170 38 1 -1.1952 2.1271 5.9375 39 1 0.4046 2.1135 6.7178 40 1 -1.7503 3.8657 9.1361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849931138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:05 Heat of formation + Delta-G solvation = -115.516424 kcal Electronic energy + Delta-G solvation = -20841.374349 eV Core-core repulsion = 17621.942839 eV Total energy + Delta-G solvation = -3219.431510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53593 -39.67026 -36.58540 -34.73714 -34.04187 -33.06653 -31.69492 -28.14968 -27.43041 -26.69766 -24.89979 -23.19908 -22.13962 -20.71716 -20.43518 -19.43724 -17.58786 -16.90088 -16.45533 -16.17540 -15.88139 -15.45047 -14.96373 -14.48853 -14.33885 -13.95721 -13.27508 -13.11485 -12.90634 -12.58743 -12.32453 -12.20374 -12.15826 -11.99949 -11.85897 -11.59623 -11.50837 -11.00779 -10.87287 -10.67712 -10.66852 -10.45003 -10.43573 -10.13800 -9.89859 -9.75930 -9.52918 -9.17250 -8.41110 -6.05585 -4.08690 2.11741 2.63339 3.12297 3.28815 3.36356 3.40578 3.50037 4.10573 4.13669 4.41132 4.46375 4.55733 4.82243 4.88236 4.97048 5.18726 5.24057 5.30250 5.30542 5.38089 5.50476 5.52983 5.57133 5.60758 5.67936 5.74274 5.77206 5.95256 6.00754 6.18411 6.42834 6.50216 6.53024 6.78710 6.94797 7.57812 7.68201 7.86779 7.92735 8.33538 8.97816 9.55863 11.05871 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.003528 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.505561 B = 7935.233144 C = 8297.150381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 C -0.140 4.140 4 O -0.359 6.359 5 C 0.069 3.931 6 C -0.164 4.164 7 H 0.135 0.865 8 C -0.100 4.100 9 C -0.181 4.181 10 C 0.509 3.491 11 O -0.509 6.509 12 O -0.348 6.348 13 C 0.067 3.933 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 -10.482 -18.408 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 C -0.197 4.197 4 O -0.278 6.278 5 C -0.007 4.007 6 C -0.182 4.182 7 H 0.153 0.847 8 C -0.137 4.137 9 C -0.182 4.182 10 C 0.352 3.648 11 O -0.397 6.397 12 O -0.264 6.264 13 C -0.006 4.006 14 C -0.146 4.146 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.598 -10.641 -18.195 22.406 hybrid contribution -0.407 0.664 0.817 1.129 sum 7.191 -9.976 -17.378 21.289 Atomic orbital electron populations 1.22237 0.93793 1.02822 1.03776 1.21692 0.93580 0.92945 0.81460 1.21794 1.01764 0.92478 1.03670 1.89220 1.84157 1.16701 1.37720 1.22966 1.01350 0.84068 0.92340 1.24303 1.02889 0.93959 0.97036 0.84734 1.22972 0.88797 0.98337 1.03585 1.22537 1.02635 1.00176 0.92852 1.21690 0.75577 0.81738 0.85826 1.90666 1.47740 1.45019 1.56294 1.86486 1.72512 1.28516 1.38895 1.23565 0.96837 1.00609 0.79590 1.21765 1.01843 0.89865 1.01093 1.19060 0.95671 0.97442 0.89188 1.21202 1.39560 0.91821 1.03323 0.92344 1.25035 0.95417 0.97790 0.96244 1.69975 1.40735 1.33260 1.09385 0.86493 0.77766 0.85203 0.78299 1.19638 1.20966 1.20963 0.90721 0.90734 0.92137 0.91687 0.91639 0.89421 0.88064 0.90881 0.86911 0.87005 0.91499 0.91483 0.92061 0.92088 0.96240 0.96244 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.45 37.16 0.31 -1.57 16 2 C 0.14 1.61 0.99 -89.85 -0.09 1.53 16 3 C -0.14 -1.52 8.97 37.15 0.33 -1.19 16 4 O -0.36 -3.92 10.76 -35.23 -0.38 -4.29 16 5 C 0.07 0.59 7.11 37.93 0.27 0.86 16 6 C -0.16 -1.60 6.93 -89.04 -0.62 -2.21 16 7 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 8 C -0.10 -0.97 9.71 -26.73 -0.26 -1.23 16 9 C -0.18 -2.18 1.98 -154.09 -0.30 -2.49 16 10 C 0.51 7.93 6.52 36.00 0.23 8.16 16 11 O -0.51 -9.18 16.60 -18.76 -0.31 -9.49 16 12 O -0.35 -5.74 8.78 -39.24 -0.34 -6.09 16 13 C 0.07 1.22 5.47 37.16 0.20 1.42 16 14 C -0.11 -2.21 5.53 -26.73 -0.15 -2.35 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.07 0.93 7.27 -51.93 -0.38 0.55 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.64 6.94 -51.93 -0.36 0.28 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.57 7.23 -51.93 -0.38 0.20 16 32 H 0.11 0.95 8.06 -51.93 -0.42 0.54 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.23 8.13 -51.92 -0.42 0.81 16 35 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -31.29 331.73 -7.44 -38.74 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.51 Total: -2.34 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.61 Total: -11.97 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.04 Total: -19.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.29 -7.44 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849931138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.780 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds