Wall clock time and date at job start Mon Mar 30 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 110.41806 * 2 1 4 4 O 1.44433 * 110.37195 * 237.69156 * 2 1 3 5 5 C 1.44422 * 105.27452 * 281.68016 * 4 2 1 6 6 C 1.54481 * 104.80535 * 319.49061 * 5 4 2 7 7 H 1.09000 * 117.84569 * 163.13074 * 6 5 4 8 8 C 1.53004 * 118.06319 * 321.13142 * 6 5 4 9 9 C 1.53000 * 60.65592 * 90.40907 * 8 6 5 10 10 C 1.50693 * 120.25005 * 112.13905 * 9 8 6 11 11 O 1.20833 * 119.99711 * 288.80833 * 10 9 8 12 12 O 1.34224 * 120.00413 * 108.80913 * 10 9 8 13 13 C 1.45201 * 117.00400 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47119 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46992 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46973 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00587 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99711 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00000 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46750 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46938 * 120.00209 * 20 18 16 23 23 H 1.48503 * 109.47020 * 240.00242 * 20 18 16 24 24 H 1.08998 * 109.47686 * 297.68742 * 1 2 3 25 25 H 1.09000 * 109.47163 * 57.68945 * 1 2 3 26 26 H 1.09003 * 109.47577 * 177.68870 * 1 2 3 27 27 H 1.09001 * 109.47320 * 182.30782 * 3 2 1 28 28 H 1.09005 * 109.47541 * 302.30984 * 3 2 1 29 29 H 1.09005 * 109.47229 * 62.31044 * 3 2 1 30 30 H 1.08995 * 110.37333 * 200.65712 * 5 4 2 31 31 H 1.08999 * 110.46531 * 78.36420 * 5 4 2 32 32 H 1.08999 * 117.43329 * 342.72698 * 8 6 5 33 33 H 1.09002 * 117.43335 * 198.08658 * 8 6 5 34 34 H 1.09008 * 109.46871 * 299.99981 * 13 12 10 35 35 H 1.08997 * 109.46840 * 59.99630 * 13 12 10 36 36 H 1.08999 * 109.47218 * 299.99565 * 14 13 12 37 37 H 1.08994 * 109.47190 * 59.99915 * 14 13 12 38 38 H 1.08999 * 109.46856 * 299.99876 * 15 14 13 39 39 H 1.09006 * 109.47018 * 59.99581 * 15 14 13 40 40 H 0.96999 * 120.00346 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0637 1.4338 0.0000 4 8 2.0328 -0.7237 -1.1444 5 6 1.9008 -2.1199 -0.7996 6 6 2.3173 -2.2008 0.6858 7 1 2.0363 -3.0930 1.2455 8 6 3.4893 -1.3352 1.1529 9 6 2.0677 -0.7740 1.2240 10 6 1.4186 -0.5176 2.5595 11 8 1.0728 -1.4460 3.2513 12 8 1.2246 0.7420 2.9807 13 6 0.5943 0.9138 4.2775 14 6 0.4574 2.4065 4.5842 15 6 -0.2073 2.5875 5.9503 16 6 -0.3416 4.0577 6.2527 17 1 0.0121 4.7898 5.5418 18 6 -0.9161 4.4683 7.4369 19 7 -1.3465 3.5769 8.3028 20 14 -1.0820 6.2908 7.8121 21 1 -0.5246 7.0808 6.6850 22 1 -2.5163 6.6304 7.9925 23 1 -0.3374 6.6096 9.0568 24 1 -0.3634 0.4775 0.9099 25 1 -0.3633 0.5493 -0.8685 26 1 -0.3634 -1.0268 -0.0414 27 1 3.1528 1.4161 -0.0414 28 1 1.6757 1.9660 -0.8686 29 1 1.7429 1.9409 0.9100 30 1 2.5659 -2.7269 -1.4137 31 1 0.8683 -2.4469 -0.9224 32 1 4.1513 -0.9307 0.3873 33 1 3.9700 -1.6058 2.0931 34 1 -0.3938 0.4537 4.2650 35 1 1.2063 0.4395 5.0446 36 1 1.4452 2.8670 4.5965 37 1 -0.1548 2.8804 3.8170 38 1 -1.1952 2.1271 5.9375 39 1 0.4046 2.1135 6.7178 40 1 -1.7503 3.8657 9.1361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849931138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:05 Heat of formation + Delta-G solvation = -132.933024 kcal Electronic energy + Delta-G solvation = -20842.129589 eV Core-core repulsion = 17621.942839 eV Total energy + Delta-G solvation = -3220.186750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49216 -40.85416 -37.95188 -35.96976 -35.60316 -34.00305 -33.57709 -29.23973 -28.92240 -27.59673 -26.20520 -24.74194 -23.23918 -22.20416 -21.51287 -20.59847 -18.78683 -18.47680 -17.84725 -17.71171 -16.76067 -16.49233 -16.30359 -15.98421 -15.55026 -15.22838 -14.57368 -14.13054 -14.00945 -13.81834 -13.80296 -13.64356 -13.41721 -13.08213 -12.89934 -12.85468 -12.50961 -12.50705 -12.37413 -12.27791 -12.12208 -11.90147 -11.61248 -11.45748 -11.39848 -11.22138 -11.03598 -10.67301 -10.58962 -8.22802 -6.34294 0.92581 1.40047 1.41382 1.44030 1.55561 2.26328 2.40657 2.69828 3.11316 3.26534 3.29224 3.54392 3.64871 3.94071 3.95366 4.01155 4.03410 4.10256 4.35863 4.41770 4.52620 4.61437 4.66518 4.73458 4.76680 4.78453 4.83150 4.86237 4.92442 5.01064 5.05244 5.15593 5.32501 5.36117 5.48458 5.61696 5.72560 5.78894 6.17751 6.58276 6.81800 7.35449 8.89623 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.003528 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.505561 B = 7935.233144 C = 8297.150381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.140 4.140 4 O -0.364 6.364 5 C 0.067 3.933 6 C -0.150 4.150 7 H 0.136 0.864 8 C -0.087 4.087 9 C -0.206 4.206 10 C 0.509 3.491 11 O -0.538 6.538 12 O -0.345 6.345 13 C 0.077 3.923 14 C -0.092 4.092 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.068 0.932 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 -10.099 -20.244 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 C -0.197 4.197 4 O -0.284 6.284 5 C -0.009 4.009 6 C -0.168 4.168 7 H 0.154 0.846 8 C -0.124 4.124 9 C -0.208 4.208 10 C 0.354 3.646 11 O -0.429 6.429 12 O -0.261 6.261 13 C 0.003 3.997 14 C -0.129 4.129 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.592 -10.261 -20.058 24.113 hybrid contribution -0.703 0.448 1.362 1.597 sum 7.889 -9.813 -18.696 22.540 Atomic orbital electron populations 1.22243 0.94098 1.03010 1.03343 1.21620 0.93381 0.93091 0.81325 1.21778 1.02261 0.92328 1.03296 1.89214 1.84081 1.17785 1.37278 1.23193 1.02607 0.83309 0.91761 1.24484 1.02080 0.92613 0.97653 0.84615 1.23126 0.87941 0.97131 1.04203 1.22624 1.04532 1.02586 0.91036 1.22397 0.74744 0.80704 0.86753 1.90648 1.49107 1.45551 1.57573 1.86485 1.72365 1.29633 1.37643 1.23187 0.96780 0.99008 0.80692 1.21446 1.01653 0.91506 0.98338 1.18941 0.94499 0.96267 0.91457 1.21643 1.39531 0.93029 1.03741 0.91617 1.26010 0.94914 1.02930 0.96056 1.70105 1.41582 1.35745 1.09970 0.85342 0.77906 0.79058 0.78406 1.18308 1.20412 1.20409 0.92583 0.89550 0.91822 0.90962 0.90723 0.90936 0.85273 0.90110 0.85194 0.86711 0.92003 0.91956 0.91376 0.91355 0.98515 0.98524 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 8.45 71.98 0.61 -3.00 16 2 C 0.15 3.06 0.99 -10.29 -0.01 3.05 16 3 C -0.14 -2.83 8.97 71.98 0.65 -2.18 16 4 O -0.36 -6.96 10.76 -148.98 -1.60 -8.57 16 5 C 0.07 0.95 7.11 72.49 0.52 1.47 16 6 C -0.15 -2.59 6.93 -9.77 -0.07 -2.66 16 7 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 8 C -0.09 -1.49 9.71 30.60 0.30 -1.20 16 9 C -0.21 -4.71 1.98 -51.91 -0.10 -4.82 16 10 C 0.51 15.77 6.52 71.23 0.46 16.23 16 11 O -0.54 -19.59 16.60 21.94 0.36 -19.22 16 12 O -0.35 -11.41 8.78 -51.36 -0.45 -11.86 16 13 C 0.08 2.86 5.47 71.98 0.39 3.25 16 14 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 15 C 0.03 1.34 4.97 29.85 0.15 1.49 16 16 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H 0.06 1.39 7.27 -2.39 -0.02 1.37 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.28 6.94 -2.39 -0.02 1.26 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.68 7.00 -2.38 -0.02 1.66 16 30 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.05 7.23 -2.39 -0.02 1.03 16 32 H 0.13 1.79 8.06 -2.39 -0.02 1.77 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.35 8.13 -2.38 -0.02 2.33 16 35 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.13 331.73 5.39 -61.74 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.01 Total: 10.36 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.76 Total: -21.89 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.69 Total: -39.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.13 5.39 -61.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849931138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.192 kcal (2) G-P(sol) polarization free energy of solvation -67.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds