Wall clock time and date at job start Mon Mar 30 2020 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99819 * 2 1 4 4 H 1.09008 * 109.46991 * 30.00626 * 3 2 1 5 5 C 1.50693 * 109.47755 * 270.00520 * 3 2 1 6 6 O 1.20828 * 119.99774 * 354.35654 * 5 3 2 7 7 O 1.34231 * 120.00303 * 174.35809 * 5 3 2 8 8 C 1.45204 * 116.99813 * 185.03203 * 7 5 3 9 9 C 1.53000 * 109.46670 * 175.16085 * 8 7 5 10 10 C 1.50703 * 115.54694 * 59.29793 * 9 8 7 11 11 H 1.07996 * 120.00261 * 267.21241 * 10 9 8 12 12 C 1.37881 * 120.00221 * 87.22472 * 10 9 8 13 13 N 1.31511 * 120.00227 * 184.02148 * 12 10 9 14 14 Si 1.86799 * 119.99913 * 4.01758 * 12 10 9 15 15 H 1.48505 * 109.46917 * 93.77846 * 14 12 10 16 16 H 1.48501 * 109.47388 * 213.78022 * 14 12 10 17 17 H 1.48503 * 109.47162 * 333.78315 * 14 12 10 18 18 C 1.52992 * 117.50493 * 273.62579 * 9 8 7 19 19 C 1.52999 * 117.49784 * 204.96300 * 9 8 7 20 20 C 1.53001 * 109.47200 * 149.99775 * 3 2 1 21 21 C 1.53788 * 113.61167 * 33.89266 * 20 3 2 22 22 C 1.53950 * 87.01648 * 220.04549 * 21 20 3 23 23 C 1.53776 * 87.11596 * 25.36204 * 22 21 20 24 24 H 1.09007 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47275 * 299.99418 * 1 2 3 26 26 H 1.09001 * 109.47579 * 60.00066 * 1 2 3 27 27 H 1.09000 * 109.47345 * 295.16275 * 8 7 5 28 28 H 1.09001 * 109.46667 * 55.16790 * 8 7 5 29 29 H 0.97001 * 120.00074 * 179.97438 * 13 12 10 30 30 H 1.09006 * 117.49902 * 359.97438 * 18 9 8 31 31 H 1.09000 * 117.50384 * 145.02234 * 18 9 8 32 32 H 1.09003 * 117.50164 * 214.98413 * 19 9 8 33 33 H 1.08998 * 117.49794 * 359.97438 * 19 9 8 34 34 H 1.09005 * 112.84856 * 165.08579 * 20 3 2 35 35 H 1.08999 * 113.61240 * 334.56951 * 21 20 3 36 36 H 1.09005 * 113.61012 * 105.46639 * 21 20 3 37 37 H 1.08997 * 113.53832 * 270.80685 * 22 21 20 38 38 H 1.09001 * 113.73859 * 139.94426 * 22 21 20 39 39 H 1.08993 * 113.61828 * 220.08905 * 23 22 21 40 40 H 1.09008 * 113.61343 * 89.18524 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 2.2144 1.7646 -1.4207 6 8 1.9909 1.0099 -2.3375 7 8 2.6445 3.0119 -1.6678 8 6 2.7116 3.4226 -3.0589 9 6 3.1038 4.8994 -3.1362 10 6 4.4283 5.2537 -2.5107 11 1 4.4696 5.5803 -1.4821 12 6 5.5874 5.1610 -3.2516 13 7 6.7509 5.3936 -2.6843 14 14 5.5053 4.7051 -5.0612 15 1 5.4688 5.9421 -5.8821 16 1 6.7021 3.9047 -5.4249 17 1 4.2795 3.9062 -5.3153 18 6 1.9807 5.9344 -3.0460 19 6 2.6805 5.6784 -4.3831 20 6 3.3588 1.2634 0.7213 21 6 4.1207 -0.0582 0.5262 22 6 4.5172 0.0445 2.0102 23 6 3.2501 0.8926 2.2098 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.4564 2.8210 -3.5799 28 1 1.7375 3.2804 -3.5270 29 1 7.5664 5.3280 -3.2054 30 1 0.9621 5.5632 -2.9321 31 1 2.1998 6.8717 -2.5347 32 1 3.3598 6.4475 -4.7509 33 1 2.1230 5.1387 -5.1486 34 1 3.9662 2.1491 0.5351 35 1 3.4734 -0.9068 0.3048 36 1 4.9648 0.0215 -0.1589 37 1 5.4425 0.5961 2.1763 38 1 4.4922 -0.9088 2.5381 39 1 3.3924 1.7387 2.8820 40 1 2.3643 0.3044 2.4497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850178556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:13 Heat of formation + Delta-G solvation = -84.331921 kcal Electronic energy + Delta-G solvation = -21359.883640 eV Core-core repulsion = 18141.804391 eV Total energy + Delta-G solvation = -3218.079248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38743 -38.78380 -37.26439 -36.74761 -35.31129 -32.11514 -30.09494 -27.27124 -26.32321 -25.49409 -25.25583 -23.68760 -21.78267 -20.48741 -19.29492 -19.15777 -17.43782 -16.96179 -16.51713 -16.16300 -15.56854 -15.47863 -14.96978 -14.74570 -14.25974 -13.78271 -13.37565 -13.01622 -12.63028 -12.42517 -12.30479 -12.24563 -12.08760 -11.77029 -11.43923 -11.17100 -10.97384 -10.67800 -10.55196 -10.53056 -10.29044 -10.21874 -10.10759 -10.03333 -9.66281 -9.32742 -9.08876 -8.61800 -8.54291 -6.13054 -4.15573 2.59541 2.98668 3.25974 3.36965 3.40160 3.73616 4.39320 4.58488 4.72863 4.76687 4.83299 4.93282 5.10955 5.13313 5.20796 5.28567 5.38271 5.44255 5.57785 5.64067 5.78386 5.91385 5.92665 5.94489 5.95746 5.98110 6.09219 6.19149 6.25679 6.32428 6.37676 6.62490 6.65012 6.85759 6.93178 7.02919 7.14387 7.67578 8.28298 8.48874 8.91612 9.49360 10.98634 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.006028 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.122695 B = 4644.205570 C = 5322.740995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.111 3.889 4 H 0.098 0.902 5 C 0.431 3.569 6 O -0.511 6.511 7 O -0.327 6.327 8 C 0.110 3.890 9 C -0.004 4.004 10 C -0.480 4.480 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.259 1.259 18 C -0.176 4.176 19 C -0.190 4.190 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 -8.421 7.304 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.270 6.270 3 C 0.052 3.948 4 H 0.116 0.884 5 C 0.273 3.727 6 O -0.400 6.400 7 O -0.242 6.242 8 C 0.037 3.963 9 C -0.005 4.005 10 C -0.517 4.517 11 H 0.100 0.900 12 C -0.125 4.125 13 N -0.531 5.531 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.184 1.184 18 C -0.213 4.213 19 C -0.227 4.227 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.177 4.177 23 C -0.166 4.166 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.889 -8.776 6.971 14.947 hybrid contribution -0.175 -0.010 -1.380 1.392 sum -10.064 -8.786 5.591 14.482 Atomic orbital electron populations 1.22895 0.80856 1.03138 1.00141 1.87985 1.19834 1.25057 1.94087 1.21476 0.97978 0.85983 0.89411 0.88434 1.24405 0.74043 0.81217 0.93028 1.90609 1.47445 1.55145 1.46767 1.86564 1.75666 1.29609 1.32353 1.22936 0.98995 0.96937 0.77468 1.19338 0.96284 0.86879 0.98012 1.20188 0.86800 1.45069 0.99675 0.90029 1.24982 0.95170 0.94157 0.98229 1.69885 0.97696 1.49066 1.36484 0.86931 0.77815 0.79035 0.85997 1.20356 1.21901 1.18370 1.22875 0.95911 1.02232 1.00262 1.22988 1.04232 1.04328 0.91176 1.22809 0.93222 1.00988 0.95728 1.22890 0.99842 0.97542 0.96621 1.22797 0.97918 1.00084 0.96939 1.22894 0.98758 0.99961 0.94960 0.89206 0.93731 0.93773 0.91707 0.93715 0.92523 0.90924 0.89092 0.88855 0.90715 0.86109 0.88842 0.91422 0.90053 0.91566 0.91153 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.81 101.05 1.09 1.37 16 2 O -0.35 -4.97 8.05 -55.12 -0.44 -5.42 16 3 C 0.11 1.64 2.63 -27.89 -0.07 1.57 16 4 H 0.10 1.21 7.79 -51.92 -0.40 0.81 16 5 C 0.43 8.26 7.23 36.00 0.26 8.52 16 6 O -0.51 -10.99 16.25 -25.46 -0.41 -11.40 16 7 O -0.33 -6.98 10.03 -39.26 -0.39 -7.37 16 8 C 0.11 2.46 5.08 37.16 0.19 2.65 16 9 C 0.00 -0.10 1.08 -155.66 -0.17 -0.26 16 10 C -0.48 -13.24 9.27 -34.44 -0.32 -13.55 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 14 Si 0.87 21.56 24.87 -169.99 -4.23 17.33 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.10 5.70 56.52 0.32 -5.78 16 18 C -0.18 -3.52 9.95 -26.70 -0.27 -3.78 16 19 C -0.19 -3.97 7.26 -26.69 -0.19 -4.17 16 20 C -0.11 -1.54 3.56 -89.80 -0.32 -1.86 16 21 C -0.13 -1.82 7.49 -25.83 -0.19 -2.02 16 22 C -0.14 -1.59 8.09 -25.83 -0.21 -1.80 16 23 C -0.13 -1.43 7.56 -25.92 -0.20 -1.63 16 24 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.54 7.13 -51.93 -0.37 1.17 16 28 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.09 2.01 6.92 -51.93 -0.36 1.65 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.12 1.91 8.11 -51.93 -0.42 1.49 16 35 H 0.09 1.32 6.88 -51.93 -0.36 0.96 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.86 7.91 -51.92 -0.41 0.45 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -31.42 329.06 -6.84 -38.26 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.60 Total: 2.57 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.49 Total: -12.88 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.25 Total: -24.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.23 Total: 17.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.42 -6.84 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850178556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.069 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds