Wall clock time and date at job start Mon Mar 30 2020 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99819 * 2 1 4 4 H 1.09008 * 109.46991 * 30.00626 * 3 2 1 5 5 C 1.50693 * 109.47755 * 270.00520 * 3 2 1 6 6 O 1.20828 * 119.99774 * 354.35654 * 5 3 2 7 7 O 1.34231 * 120.00303 * 174.35809 * 5 3 2 8 8 C 1.45204 * 116.99813 * 185.03203 * 7 5 3 9 9 C 1.53000 * 109.46670 * 175.16085 * 8 7 5 10 10 C 1.50703 * 115.54694 * 59.29793 * 9 8 7 11 11 H 1.07996 * 120.00261 * 267.21241 * 10 9 8 12 12 C 1.37881 * 120.00221 * 87.22472 * 10 9 8 13 13 N 1.31511 * 120.00227 * 184.02148 * 12 10 9 14 14 Si 1.86799 * 119.99913 * 4.01758 * 12 10 9 15 15 H 1.48505 * 109.46917 * 93.77846 * 14 12 10 16 16 H 1.48501 * 109.47388 * 213.78022 * 14 12 10 17 17 H 1.48503 * 109.47162 * 333.78315 * 14 12 10 18 18 C 1.52992 * 117.50493 * 273.62579 * 9 8 7 19 19 C 1.52999 * 117.49784 * 204.96300 * 9 8 7 20 20 C 1.53001 * 109.47200 * 149.99775 * 3 2 1 21 21 C 1.53788 * 113.61167 * 33.89266 * 20 3 2 22 22 C 1.53950 * 87.01648 * 220.04549 * 21 20 3 23 23 C 1.53776 * 87.11596 * 25.36204 * 22 21 20 24 24 H 1.09007 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47275 * 299.99418 * 1 2 3 26 26 H 1.09001 * 109.47579 * 60.00066 * 1 2 3 27 27 H 1.09000 * 109.47345 * 295.16275 * 8 7 5 28 28 H 1.09001 * 109.46667 * 55.16790 * 8 7 5 29 29 H 0.97001 * 120.00074 * 179.97438 * 13 12 10 30 30 H 1.09006 * 117.49902 * 359.97438 * 18 9 8 31 31 H 1.09000 * 117.50384 * 145.02234 * 18 9 8 32 32 H 1.09003 * 117.50164 * 214.98413 * 19 9 8 33 33 H 1.08998 * 117.49794 * 359.97438 * 19 9 8 34 34 H 1.09005 * 112.84856 * 165.08579 * 20 3 2 35 35 H 1.08999 * 113.61240 * 334.56951 * 21 20 3 36 36 H 1.09005 * 113.61012 * 105.46639 * 21 20 3 37 37 H 1.08997 * 113.53832 * 270.80685 * 22 21 20 38 38 H 1.09001 * 113.73859 * 139.94426 * 22 21 20 39 39 H 1.08993 * 113.61828 * 220.08905 * 23 22 21 40 40 H 1.09008 * 113.61343 * 89.18524 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 2.2144 1.7646 -1.4207 6 8 1.9909 1.0099 -2.3375 7 8 2.6445 3.0119 -1.6678 8 6 2.7116 3.4226 -3.0589 9 6 3.1038 4.8994 -3.1362 10 6 4.4283 5.2537 -2.5107 11 1 4.4696 5.5803 -1.4821 12 6 5.5874 5.1610 -3.2516 13 7 6.7509 5.3936 -2.6843 14 14 5.5053 4.7051 -5.0612 15 1 5.4688 5.9421 -5.8821 16 1 6.7021 3.9047 -5.4249 17 1 4.2795 3.9062 -5.3153 18 6 1.9807 5.9344 -3.0460 19 6 2.6805 5.6784 -4.3831 20 6 3.3588 1.2634 0.7213 21 6 4.1207 -0.0582 0.5262 22 6 4.5172 0.0445 2.0102 23 6 3.2501 0.8926 2.2098 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.4564 2.8210 -3.5799 28 1 1.7375 3.2804 -3.5270 29 1 7.5664 5.3280 -3.2054 30 1 0.9621 5.5632 -2.9321 31 1 2.1998 6.8717 -2.5347 32 1 3.3598 6.4475 -4.7509 33 1 2.1230 5.1387 -5.1486 34 1 3.9662 2.1491 0.5351 35 1 3.4734 -0.9068 0.3048 36 1 4.9648 0.0215 -0.1589 37 1 5.4425 0.5961 2.1763 38 1 4.4922 -0.9088 2.5381 39 1 3.3924 1.7387 2.8820 40 1 2.3643 0.3044 2.4497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850178556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:13 Heat of formation + Delta-G solvation = -102.631804 kcal Electronic energy + Delta-G solvation = -21360.677182 eV Core-core repulsion = 18141.804391 eV Total energy + Delta-G solvation = -3218.872791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80122 -40.05997 -38.80064 -37.97429 -36.92714 -34.26732 -31.27774 -28.89075 -27.53151 -27.10430 -26.44842 -24.89190 -23.42170 -21.90163 -21.07147 -20.31856 -18.90943 -18.63252 -17.91703 -17.61307 -17.10605 -16.81784 -16.48702 -16.02245 -15.73574 -15.06119 -14.83527 -14.58283 -14.38836 -14.03790 -13.77647 -13.37555 -13.15686 -13.09644 -12.87662 -12.82563 -12.44877 -12.26467 -12.05830 -11.93110 -11.77670 -11.55151 -11.53713 -11.30425 -11.11623 -11.01098 -10.71251 -10.58512 -10.34262 -8.31706 -6.37896 1.09210 1.29708 1.34895 1.44448 1.58304 2.32815 2.65011 3.01252 3.11326 3.50576 3.68069 3.68928 3.84624 3.93841 3.95550 4.14766 4.18124 4.26935 4.29869 4.35631 4.49239 4.50871 4.58892 4.78498 4.79989 4.81040 4.91531 4.97591 4.97832 5.09377 5.12458 5.15397 5.29880 5.42227 5.54359 5.62910 5.64418 5.90879 6.28896 6.68228 6.76466 7.30377 8.83653 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.006028 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.122695 B = 4644.205570 C = 5322.740995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.363 6.363 3 C 0.120 3.880 4 H 0.127 0.873 5 C 0.427 3.573 6 O -0.538 6.538 7 O -0.342 6.342 8 C 0.114 3.886 9 C -0.040 4.040 10 C -0.478 4.478 11 H 0.038 0.962 12 C 0.022 3.978 13 N -0.943 5.943 14 Si 0.930 3.070 15 H -0.261 1.261 16 H -0.299 1.299 17 H -0.240 1.240 18 C -0.153 4.153 19 C -0.181 4.181 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.110 4.110 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.265 0.735 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 -9.124 7.416 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.281 6.281 3 C 0.060 3.940 4 H 0.144 0.856 5 C 0.271 3.729 6 O -0.429 6.429 7 O -0.258 6.258 8 C 0.041 3.959 9 C -0.041 4.041 10 C -0.515 4.515 11 H 0.056 0.944 12 C -0.176 4.176 13 N -0.583 5.583 14 Si 0.755 3.245 15 H -0.186 1.186 16 H -0.227 1.227 17 H -0.163 1.163 18 C -0.190 4.190 19 C -0.218 4.218 20 C -0.139 4.139 21 C -0.177 4.177 22 C -0.169 4.169 23 C -0.147 4.147 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.402 -9.475 7.090 17.142 hybrid contribution 0.558 0.191 -1.328 1.453 sum -11.844 -9.284 5.763 16.115 Atomic orbital electron populations 1.23160 0.79001 1.04756 1.00877 1.87980 1.21874 1.24430 1.93809 1.21584 0.98962 0.86978 0.86472 0.85590 1.25455 0.72639 0.80066 0.94754 1.90580 1.48722 1.55465 1.48095 1.86585 1.76206 1.31073 1.31899 1.22734 0.99360 0.95697 0.78153 1.19239 0.95622 0.88284 1.00914 1.20314 0.89340 1.43883 0.97985 0.94421 1.25785 0.94705 0.94370 1.02708 1.70027 0.98540 1.51411 1.38319 0.86028 0.78188 0.79478 0.80846 1.18620 1.22682 1.16290 1.22932 0.96297 1.00623 0.99155 1.23066 1.03915 1.03284 0.91492 1.22822 0.92774 0.99938 0.98363 1.22926 0.99168 0.97483 0.98153 1.22775 0.98110 1.01181 0.94867 1.22856 0.99153 1.00309 0.92415 0.87274 0.90854 0.95092 0.94068 0.91386 0.92555 0.87702 0.89407 0.89610 0.87801 0.88731 0.88929 0.93762 0.90271 0.89554 0.89897 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.81 113.37 1.23 1.56 16 2 O -0.36 -9.56 8.05 -129.96 -1.05 -10.61 16 3 C 0.12 3.40 2.63 29.85 0.08 3.47 16 4 H 0.13 2.82 7.79 -2.38 -0.02 2.80 16 5 C 0.43 16.27 7.23 71.23 0.51 16.79 16 6 O -0.54 -23.09 16.25 28.37 0.46 -22.63 16 7 O -0.34 -14.69 10.03 -51.42 -0.52 -15.20 16 8 C 0.11 5.02 5.08 71.98 0.37 5.39 16 9 C -0.04 -1.82 1.08 -52.93 -0.06 -1.87 16 10 C -0.48 -27.08 9.27 25.60 0.24 -26.85 16 11 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 12 C 0.02 1.28 5.47 84.66 0.46 1.75 16 13 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 14 Si 0.93 44.55 24.87 68.60 1.71 46.26 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 17 H -0.24 -10.63 5.70 99.48 0.57 -10.06 16 18 C -0.15 -5.75 9.95 30.62 0.30 -5.44 16 19 C -0.18 -7.03 7.26 30.62 0.22 -6.81 16 20 C -0.12 -3.36 3.56 -10.27 -0.04 -3.40 16 21 C -0.14 -3.88 7.49 31.18 0.23 -3.65 16 22 C -0.13 -2.81 8.09 31.18 0.25 -2.56 16 23 C -0.11 -2.21 7.56 31.12 0.24 -1.97 16 24 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.04 1.96 7.13 -2.39 -0.02 1.95 16 28 H 0.07 2.64 8.06 -2.39 -0.02 2.62 16 29 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.09 3.48 6.92 -2.39 -0.02 3.46 16 33 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.09 3.13 8.11 -2.38 -0.02 3.11 16 35 H 0.09 2.58 6.88 -2.39 -0.02 2.56 16 36 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.71 7.91 -2.38 -0.02 1.69 16 Total: -1.00 -70.53 329.06 5.81 -64.73 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.87 Total: 19.62 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.04 Total: -23.60 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.10 Total: -48.44 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.71 Total: 46.26 kcal Total: -70.53 5.81 -64.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850178556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.907 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds