Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46914 * 299.99531 * 3 2 1 6 6 H 1.48495 * 109.47185 * 59.99566 * 3 2 1 7 7 C 1.37885 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99647 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47489 * 179.97438 * 11 10 9 13 13 O 1.45207 * 109.46910 * 65.00023 * 12 11 10 14 14 C 1.34225 * 116.99766 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00603 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99548 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.45745 * 331.04280 * 16 14 13 18 18 C 1.55346 * 110.60738 * 208.39452 * 16 14 13 19 19 C 1.54926 * 102.65806 * 203.75213 * 18 16 14 20 20 C 1.54380 * 104.34135 * 37.71118 * 19 18 16 21 21 C 1.53484 * 106.39909 * 336.37201 * 20 19 18 22 22 C 1.52561 * 121.07947 * 215.95569 * 21 20 19 23 23 C 1.52566 * 121.05867 * 144.24419 * 21 20 19 24 24 H 0.96994 * 119.99825 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46994 * 59.99607 * 9 7 2 26 26 H 1.08995 * 109.47067 * 300.00131 * 9 7 2 27 27 H 1.09014 * 109.46767 * 60.00216 * 11 10 9 28 28 H 1.08996 * 109.47473 * 300.00871 * 11 10 9 29 29 H 1.09001 * 109.47119 * 305.00751 * 12 11 10 30 30 H 1.08992 * 109.47409 * 185.00644 * 12 11 10 31 31 H 1.08996 * 110.88362 * 85.44036 * 18 16 14 32 32 H 1.08992 * 110.74951 * 321.99908 * 18 16 14 33 33 H 1.09000 * 110.48053 * 278.96116 * 19 18 16 34 34 H 1.08998 * 110.48036 * 156.46312 * 19 18 16 35 35 H 1.08992 * 110.07439 * 95.60743 * 20 19 18 36 36 H 1.09001 * 110.06846 * 217.14251 * 20 19 18 37 37 H 1.09003 * 117.51092 * 357.02439 * 22 21 20 38 38 H 1.08998 * 117.50950 * 142.10485 * 22 21 20 39 39 H 1.09002 * 117.51506 * 217.92659 * 23 21 20 40 40 H 1.09002 * 117.51135 * 2.98152 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3942 -6.7763 1.3996 15 8 4.6285 -7.5830 0.5311 16 6 5.2181 -6.7669 2.6614 17 1 5.2609 -5.7618 3.0810 18 6 6.6500 -7.3016 2.3835 19 6 7.1048 -7.7957 3.7796 20 6 5.8330 -8.4131 4.3997 21 6 4.6416 -7.7562 3.6892 22 6 3.3530 -7.4389 4.4418 23 6 3.3726 -8.5469 3.3856 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 0.9446 -4.9827 -0.8888 28 1 0.9451 -4.9822 0.8912 29 1 3.3209 -5.7958 -0.8418 30 1 2.1819 -6.9375 -0.0888 31 1 7.3002 -6.5032 2.0257 32 1 6.6227 -8.1267 1.6719 33 1 7.4566 -6.9597 4.3841 34 1 7.8859 -8.5496 3.6815 35 1 5.8204 -9.4901 4.2330 36 1 5.7958 -8.1990 5.4678 37 1 3.2932 -7.7410 5.4874 38 1 2.8379 -6.5120 4.1896 39 1 2.8703 -8.3489 2.4387 40 1 3.3260 -9.5780 3.7359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860175069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -126.462384 kcal Electronic energy + Delta-G solvation = -20487.140436 eV Core-core repulsion = 17267.234273 eV Total energy + Delta-G solvation = -3219.906162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82789 -38.78215 -36.97644 -35.97674 -34.33888 -32.77755 -30.53644 -29.34429 -26.94494 -26.06938 -23.08852 -22.66305 -22.34481 -21.59074 -20.55230 -18.98667 -17.61902 -16.67048 -16.57527 -16.21484 -15.73643 -15.22885 -14.92280 -14.71312 -14.30384 -14.18673 -13.56078 -13.17715 -12.89337 -12.71980 -12.51559 -12.03473 -11.93458 -11.67370 -11.43014 -11.36752 -11.12445 -10.92214 -10.87629 -10.82992 -10.74068 -10.47125 -10.38579 -10.33468 -10.04990 -9.79515 -9.12183 -8.88701 -8.22187 -6.12750 -4.14343 2.28711 2.78680 3.28585 3.35019 3.41746 3.56521 4.11503 4.29076 4.32232 4.56584 4.65002 4.72978 4.87311 4.97526 5.04501 5.21117 5.23028 5.23983 5.31766 5.45898 5.47966 5.51459 5.58172 5.65993 5.75807 5.81433 5.83199 5.86948 5.91114 5.94971 5.99935 6.10591 6.11732 6.64179 7.04682 7.38945 7.77722 7.91013 8.11819 8.51775 8.98684 9.50545 10.98907 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003688 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.004026 B = 7590.056025 C = 7914.387249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.340 6.340 14 C 0.469 3.531 15 O -0.514 6.514 16 C -0.056 4.056 17 H 0.112 0.888 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.163 4.163 23 C -0.169 4.169 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.337 -17.537 8.563 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.015 4.015 12 C -0.001 4.001 13 O -0.256 6.256 14 C 0.312 3.688 15 O -0.403 6.403 16 C -0.075 4.075 17 H 0.130 0.870 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.200 4.200 23 C -0.206 4.206 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.420 -17.601 8.278 21.612 hybrid contribution -0.200 0.853 -0.246 0.910 sum 9.220 -16.748 8.032 20.737 Atomic orbital electron populations 1.69969 1.06111 1.27095 1.50623 1.24952 0.94984 0.99457 0.95099 0.86276 0.80046 0.82519 0.77639 1.19452 1.20821 1.20797 1.21093 0.94144 0.89283 1.50742 0.91452 1.20243 0.88759 0.83525 0.95499 1.87918 1.35315 1.12604 1.95217 1.22313 0.93249 0.85488 1.00499 1.23201 0.93718 0.98658 0.84496 1.86631 1.43495 1.54075 1.41380 1.23501 0.78989 0.77760 0.88551 1.90613 1.68014 1.38151 1.43519 1.21501 0.94356 1.01576 0.90064 0.87007 1.22563 0.92414 1.01649 0.98055 1.22331 0.97127 1.00623 0.95754 1.21618 0.91949 0.99517 0.99110 1.21539 0.90161 1.00568 0.99853 1.23086 0.98959 1.00587 0.97330 1.23037 0.99688 0.97208 1.00696 0.92679 0.97623 0.97488 0.92014 0.93243 0.90540 0.90608 0.90557 0.89597 0.91050 0.90985 0.91229 0.91049 0.88264 0.87758 0.89117 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -15.28 9.43 -34.44 -0.32 -15.60 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.35 5.69 36.01 0.20 5.55 16 10 O -0.39 -9.61 10.30 -38.80 -0.40 -10.01 16 11 C 0.06 1.16 6.33 37.16 0.24 1.39 16 12 C 0.07 1.20 5.85 37.16 0.22 1.41 16 13 O -0.34 -5.86 10.19 -42.01 -0.43 -6.29 16 14 C 0.47 7.22 5.34 36.01 0.19 7.42 16 15 O -0.51 -8.75 15.65 -18.75 -0.29 -9.05 16 16 C -0.06 -0.68 3.23 -90.08 -0.29 -0.97 16 17 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.11 -1.13 6.24 -24.47 -0.15 -1.28 16 19 C -0.12 -0.95 6.83 -24.99 -0.17 -1.12 16 20 C -0.08 -0.69 6.55 -25.76 -0.17 -0.86 16 21 C -0.12 -1.26 2.40 -154.25 -0.37 -1.63 16 22 C -0.16 -1.64 10.26 -26.91 -0.28 -1.91 16 23 C -0.17 -1.81 9.65 -26.91 -0.26 -2.07 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.98 7.28 -51.93 -0.38 0.61 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.13 6.89 -51.93 -0.36 0.77 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -32.75 335.94 -8.23 -40.98 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.62 Total: -3.27 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.26 Total: -8.13 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.12 Total: -25.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.75 -8.23 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860175069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.487 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds